Wall clock time and date at job start Tue Mar 31 2020 05:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47279 * 2 1 4 4 C 1.52996 * 109.46807 * 119.99945 * 2 1 3 5 5 H 1.09001 * 109.47308 * 305.36308 * 4 2 1 6 6 F 1.39906 * 109.46947 * 185.36418 * 4 2 1 7 7 C 1.50692 * 109.47311 * 65.36762 * 4 2 1 8 8 O 1.21286 * 120.00159 * 64.09496 * 7 4 2 9 9 N 1.34783 * 120.00433 * 244.09360 * 7 4 2 10 10 C 1.47430 * 125.64433 * 359.97438 * 9 7 4 11 11 C 1.54901 * 104.83033 * 204.16582 * 10 9 7 12 12 C 1.55161 * 101.58412 * 322.98696 * 11 10 9 13 13 H 1.08998 * 110.71564 * 276.96547 * 12 11 10 14 14 N 1.46898 * 110.72289 * 153.86804 * 12 11 10 15 15 C 1.46899 * 110.99988 * 79.23520 * 14 12 11 16 16 C 1.50698 * 109.47005 * 179.97438 * 15 14 12 17 17 O 1.21290 * 120.00026 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99730 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99675 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00203 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00095 * 180.02562 * 19 18 16 22 22 N 1.31418 * 119.99733 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00513 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47161 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.46703 * 300.00158 * 23 21 19 26 26 H 1.48497 * 109.46684 * 59.99580 * 23 21 19 27 27 C 1.47317 * 125.62113 * 179.83173 * 9 7 4 28 28 H 1.08999 * 110.06478 * 298.25135 * 27 9 7 29 29 C 1.53004 * 109.84471 * 59.50855 * 27 9 7 30 30 H 1.09010 * 109.46973 * 59.99980 * 1 2 3 31 31 H 1.08994 * 109.47514 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47384 * 300.00343 * 1 2 3 33 33 H 1.08997 * 109.47384 * 239.99657 * 2 1 3 34 34 H 1.08994 * 109.47090 * 175.21411 * 3 2 1 35 35 H 1.09001 * 109.47279 * 295.22058 * 3 2 1 36 36 H 1.08999 * 109.47000 * 55.21278 * 3 2 1 37 37 H 1.08992 * 110.36883 * 85.32153 * 10 9 7 38 38 H 1.09004 * 110.45566 * 323.04696 * 10 9 7 39 39 H 1.09000 * 111.00496 * 204.91392 * 11 10 9 40 40 H 1.09000 * 111.04223 * 81.07877 * 11 10 9 41 41 H 1.00895 * 111.00035 * 203.19117 * 14 12 11 42 42 H 1.08999 * 109.47303 * 59.99966 * 15 14 12 43 43 H 1.09002 * 109.47260 * 300.00021 * 15 14 12 44 44 H 0.96994 * 119.99933 * 0.02562 * 18 16 15 45 45 H 0.96998 * 120.00092 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.46583 * 182.58186 * 29 27 9 47 47 H 1.08994 * 109.47325 * 302.58539 * 29 27 9 48 48 H 1.08993 * 109.47348 * 62.58767 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6002 -0.2659 2.1366 6 9 3.4335 -0.6154 1.3126 7 6 1.6490 -2.1751 1.1846 8 8 2.0971 -2.8853 0.3095 9 7 0.8014 -2.6865 2.0994 10 6 0.1854 -1.9402 3.2116 11 6 -0.1531 -3.0172 4.2723 12 6 -0.5913 -4.2076 3.3788 13 1 -1.6361 -4.1054 3.0854 14 7 -0.3700 -5.4851 4.0695 15 6 -1.4397 -5.7507 5.0406 16 6 -1.1793 -7.0667 5.7272 17 8 -0.1989 -7.7188 5.4366 18 7 -2.0355 -7.5184 6.6650 19 6 -1.7984 -8.7153 7.2901 20 1 -0.9257 -9.2965 7.0307 21 6 -2.6812 -9.1813 8.2565 22 7 -3.7433 -8.4745 8.5718 23 14 -2.3586 -10.8125 9.1077 24 1 -3.4396 -11.0807 10.0898 25 1 -2.3260 -11.9002 8.0972 26 1 -1.0532 -10.7530 9.8131 27 6 0.3353 -4.0830 2.1510 28 1 -0.2170 -4.3267 1.2435 29 6 1.5316 -5.0246 2.3042 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 3.1266 1.4437 0.0857 35 1 1.7483 1.9311 -0.9297 36 1 1.6084 1.9805 0.8440 37 1 -0.7228 -1.4399 2.8757 38 1 0.8889 -1.2143 3.6192 39 1 -0.9703 -2.6895 4.9149 40 1 0.7261 -3.2749 4.8628 41 1 -0.2846 -6.2431 3.4091 42 1 -2.3978 -5.7948 4.5227 43 1 -1.4639 -4.9521 5.7820 44 1 -2.8194 -6.9967 6.8977 45 1 -4.3595 -8.7996 9.2467 46 1 1.1842 -6.0577 2.2957 47 1 2.2255 -4.8677 1.4785 48 1 2.0372 -4.8191 3.2477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179381349.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:36 Heat of formation + Delta-G solvation = -120.628751 kcal Electronic energy + Delta-G solvation = -28800.717608 eV Core-core repulsion = 24611.864418 eV Total energy + Delta-G solvation = -4188.853189 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.17897 -40.58111 -38.57602 -37.82184 -35.98411 -34.85291 -33.83620 -31.55011 -31.23893 -30.84178 -28.04439 -27.48364 -26.66758 -25.28201 -23.88433 -23.39641 -21.40101 -20.01281 -19.48561 -19.24639 -18.12408 -17.92296 -16.72325 -16.54805 -16.21837 -16.00030 -15.67606 -15.33619 -14.89200 -14.58122 -14.43979 -14.20182 -13.88884 -13.73755 -13.52083 -13.32540 -13.24075 -13.13234 -12.75298 -12.64139 -12.41913 -12.31856 -12.24684 -11.99045 -11.65273 -11.61529 -11.56908 -11.53414 -11.46296 -11.11382 -11.02223 -10.91524 -10.70622 -10.46093 -10.23777 -9.88487 -9.52614 -8.97364 -8.52010 -8.16653 -7.99142 -6.44340 -3.85227 2.16455 2.45447 3.18573 3.24454 3.28930 3.82514 3.87213 3.92592 4.00533 4.18134 4.25223 4.34555 4.35181 4.39922 4.66807 4.88383 4.91930 4.99377 5.03537 5.04679 5.15746 5.18115 5.18573 5.25929 5.32649 5.37832 5.41215 5.48459 5.54522 5.58161 5.70798 5.76378 5.78335 5.78994 5.91052 5.99260 6.08208 6.19996 6.23177 6.49174 7.09416 7.15371 7.52668 7.53407 7.75815 8.03188 8.58128 9.15168 9.51055 10.02368 10.73224 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.034477 B = 0.002058 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.930778 B =13603.887321 C =13932.244700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.148 4.148 4 C 0.087 3.913 5 H 0.100 0.900 6 F -0.187 7.187 7 C 0.511 3.489 8 O -0.519 6.519 9 N -0.605 5.605 10 C 0.093 3.907 11 C -0.123 4.123 12 C 0.077 3.923 13 H 0.057 0.943 14 N -0.654 5.654 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.284 1.284 25 H -0.274 1.274 26 H -0.273 1.273 27 C 0.138 3.862 28 H 0.076 0.924 29 C -0.153 4.153 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.354 0.646 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.071 0.929 47 H 0.062 0.938 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.399 21.342 -13.466 25.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.205 4.205 4 C 0.047 3.953 5 H 0.118 0.882 6 F -0.168 7.168 7 C 0.297 3.703 8 O -0.394 6.394 9 N -0.340 5.340 10 C -0.030 4.030 11 C -0.162 4.162 12 C -0.034 4.034 13 H 0.075 0.925 14 N -0.288 5.288 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.210 1.210 25 H -0.199 1.199 26 H -0.199 1.199 27 C 0.036 3.964 28 H 0.094 0.906 29 C -0.211 4.211 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.176 0.824 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.658 20.748 -13.584 25.233 hybrid contribution -1.181 -0.684 0.216 1.382 sum 3.477 20.064 -13.368 24.359 Atomic orbital electron populations 1.21827 0.93425 1.02517 1.02896 1.21631 0.97269 0.97389 0.97104 1.21823 1.02045 0.94126 1.02537 1.21667 0.77823 0.93711 1.02062 0.88226 1.92878 1.29534 1.96652 1.97710 1.20525 0.78876 0.89659 0.81274 1.90736 1.52935 1.60851 1.34866 1.48642 1.45463 1.11315 1.28580 1.22502 0.97954 0.95548 0.87041 1.22879 1.03256 0.93299 0.96754 1.22539 0.96704 0.91707 0.92458 0.92530 1.60280 1.45646 1.03331 1.19582 1.21708 0.92406 0.98131 0.95994 1.19772 0.85697 0.87806 0.84197 1.90534 1.29837 1.59413 1.66853 1.41849 1.23308 1.20544 1.34250 1.19653 1.09416 0.96771 1.17091 0.87960 1.25264 0.95393 0.99741 0.97532 1.69602 1.12853 1.38900 1.32975 0.85912 0.77929 0.81474 0.78883 1.20979 1.19909 1.19869 1.21688 0.95982 0.81148 0.97629 0.90634 1.21956 0.97427 0.98911 1.02832 0.91297 0.92291 0.91951 0.88949 0.91635 0.91637 0.92186 0.90776 0.90287 0.89658 0.88972 0.82417 0.93780 0.89513 0.77476 0.91813 0.90990 0.91872 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.01 37.16 0.33 -0.55 16 2 C -0.11 -0.86 2.72 -90.62 -0.25 -1.11 16 3 C -0.15 -0.86 9.09 37.16 0.34 -0.53 16 4 C 0.09 0.79 3.16 -27.89 -0.09 0.70 16 5 H 0.10 0.64 6.05 -51.93 -0.31 0.32 16 6 F -0.19 -2.17 16.25 2.25 0.04 -2.13 16 7 C 0.51 6.07 5.75 -10.99 -0.06 6.01 16 8 O -0.52 -8.15 15.80 5.55 0.09 -8.06 16 9 N -0.60 -6.27 3.09 -162.80 -0.50 -6.78 16 10 C 0.09 0.68 6.44 -2.53 -0.02 0.66 16 11 C -0.12 -1.13 6.35 -24.58 -0.16 -1.29 16 12 C 0.08 0.85 3.08 -65.88 -0.20 0.64 16 13 H 0.06 0.57 8.01 -51.93 -0.42 0.15 16 14 N -0.65 -9.62 5.04 -106.06 -0.53 -10.15 16 15 C 0.05 0.81 6.02 -4.98 -0.03 0.78 16 16 C 0.44 10.01 7.82 -10.98 -0.09 9.92 16 17 O -0.58 -15.42 15.78 5.55 0.09 -15.33 16 18 N -0.56 -13.89 5.29 -10.96 -0.06 -13.95 16 19 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 20 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.15 13.05 55.50 0.72 -23.42 16 23 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 C 0.14 1.60 3.44 -66.79 -0.23 1.37 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 C -0.15 -2.07 8.32 37.16 0.31 -1.76 16 30 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.06 0.43 7.39 -51.93 -0.38 0.05 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 0.84 8.04 -51.93 -0.42 0.43 16 34 H 0.06 0.44 7.53 -51.93 -0.39 0.05 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.46 6.87 -51.93 -0.36 0.11 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.35 5.53 6.67 -39.29 -0.26 5.27 16 42 H 0.04 0.64 8.11 -51.93 -0.42 0.22 16 43 H 0.09 1.27 7.85 -51.93 -0.41 0.87 16 44 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 45 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.07 0.98 6.67 -51.93 -0.35 0.63 16 47 H 0.06 0.94 6.62 -51.93 -0.34 0.59 16 48 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 LS Contribution 388.00 15.07 5.85 5.85 Total: -1.00 -32.90 388.00 -7.41 -40.31 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -7.70 Total: 10.87 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -0.38 Total: 6.96 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.37 Total: -54.30 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: 0.18 Total: -23.40 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.90 -7.41 -40.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179381349.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.317 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds