Wall clock time and date at job start Tue Mar 31 2020 05:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47279 * 2 1 4 4 C 1.52996 * 109.46807 * 119.99945 * 2 1 3 5 5 H 1.09001 * 109.47308 * 305.36308 * 4 2 1 6 6 F 1.39906 * 109.46947 * 185.36418 * 4 2 1 7 7 C 1.50692 * 109.47311 * 65.36762 * 4 2 1 8 8 O 1.21286 * 120.00159 * 64.09496 * 7 4 2 9 9 N 1.34783 * 120.00433 * 244.09360 * 7 4 2 10 10 C 1.47430 * 125.64433 * 359.97438 * 9 7 4 11 11 C 1.54901 * 104.83033 * 204.16582 * 10 9 7 12 12 C 1.55161 * 101.58412 * 322.98696 * 11 10 9 13 13 H 1.08998 * 110.71564 * 276.96547 * 12 11 10 14 14 N 1.46898 * 110.72289 * 153.86804 * 12 11 10 15 15 C 1.46899 * 110.99988 * 79.23520 * 14 12 11 16 16 C 1.50698 * 109.47005 * 179.97438 * 15 14 12 17 17 O 1.21290 * 120.00026 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99730 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99675 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00203 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00095 * 180.02562 * 19 18 16 22 22 N 1.31418 * 119.99733 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00513 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47161 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.46703 * 300.00158 * 23 21 19 26 26 H 1.48497 * 109.46684 * 59.99580 * 23 21 19 27 27 C 1.47317 * 125.62113 * 179.83173 * 9 7 4 28 28 H 1.08999 * 110.06478 * 298.25135 * 27 9 7 29 29 C 1.53004 * 109.84471 * 59.50855 * 27 9 7 30 30 H 1.09010 * 109.46973 * 59.99980 * 1 2 3 31 31 H 1.08994 * 109.47514 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47384 * 300.00343 * 1 2 3 33 33 H 1.08997 * 109.47384 * 239.99657 * 2 1 3 34 34 H 1.08994 * 109.47090 * 175.21411 * 3 2 1 35 35 H 1.09001 * 109.47279 * 295.22058 * 3 2 1 36 36 H 1.08999 * 109.47000 * 55.21278 * 3 2 1 37 37 H 1.08992 * 110.36883 * 85.32153 * 10 9 7 38 38 H 1.09004 * 110.45566 * 323.04696 * 10 9 7 39 39 H 1.09000 * 111.00496 * 204.91392 * 11 10 9 40 40 H 1.09000 * 111.04223 * 81.07877 * 11 10 9 41 41 H 1.00895 * 111.00035 * 203.19117 * 14 12 11 42 42 H 1.08999 * 109.47303 * 59.99966 * 15 14 12 43 43 H 1.09002 * 109.47260 * 300.00021 * 15 14 12 44 44 H 0.96994 * 119.99933 * 0.02562 * 18 16 15 45 45 H 0.96998 * 120.00092 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.46583 * 182.58186 * 29 27 9 47 47 H 1.08994 * 109.47325 * 302.58539 * 29 27 9 48 48 H 1.08993 * 109.47348 * 62.58767 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6002 -0.2659 2.1366 6 9 3.4335 -0.6154 1.3126 7 6 1.6490 -2.1751 1.1846 8 8 2.0971 -2.8853 0.3095 9 7 0.8014 -2.6865 2.0994 10 6 0.1854 -1.9402 3.2116 11 6 -0.1531 -3.0172 4.2723 12 6 -0.5913 -4.2076 3.3788 13 1 -1.6361 -4.1054 3.0854 14 7 -0.3700 -5.4851 4.0695 15 6 -1.4397 -5.7507 5.0406 16 6 -1.1793 -7.0667 5.7272 17 8 -0.1989 -7.7188 5.4366 18 7 -2.0355 -7.5184 6.6650 19 6 -1.7984 -8.7153 7.2901 20 1 -0.9257 -9.2965 7.0307 21 6 -2.6812 -9.1813 8.2565 22 7 -3.7433 -8.4745 8.5718 23 14 -2.3586 -10.8125 9.1077 24 1 -3.4396 -11.0807 10.0898 25 1 -2.3260 -11.9002 8.0972 26 1 -1.0532 -10.7530 9.8131 27 6 0.3353 -4.0830 2.1510 28 1 -0.2170 -4.3267 1.2435 29 6 1.5316 -5.0246 2.3042 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 3.1266 1.4437 0.0857 35 1 1.7483 1.9311 -0.9297 36 1 1.6084 1.9805 0.8440 37 1 -0.7228 -1.4399 2.8757 38 1 0.8889 -1.2143 3.6192 39 1 -0.9703 -2.6895 4.9149 40 1 0.7261 -3.2749 4.8628 41 1 -0.2846 -6.2431 3.4091 42 1 -2.3978 -5.7948 4.5227 43 1 -1.4639 -4.9521 5.7820 44 1 -2.8194 -6.9967 6.8977 45 1 -4.3595 -8.7996 9.2467 46 1 1.1842 -6.0577 2.2957 47 1 2.2255 -4.8677 1.4785 48 1 2.0372 -4.8191 3.2477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179381349.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:35 Heat of formation + Delta-G solvation = -143.895167 kcal Electronic energy + Delta-G solvation = -28801.726515 eV Core-core repulsion = 24611.864418 eV Total energy + Delta-G solvation = -4189.862097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.99262 -41.47170 -40.14236 -39.02379 -36.60281 -36.20418 -35.56958 -33.26972 -32.44450 -31.81278 -28.88644 -28.06078 -27.88988 -26.56417 -25.37090 -24.18729 -22.07505 -21.09507 -20.78627 -20.30909 -19.89150 -18.91722 -17.84765 -17.49144 -17.28117 -16.94381 -16.85415 -16.50525 -16.31780 -15.86705 -15.58477 -15.39820 -15.06713 -14.94985 -14.49481 -14.34116 -14.08706 -13.94818 -13.66279 -13.56402 -13.48599 -13.40218 -13.18165 -13.12442 -13.01312 -12.89737 -12.71896 -12.43911 -12.41559 -12.13919 -12.12099 -12.07558 -11.87394 -11.65399 -11.57286 -11.49065 -10.81350 -10.32661 -9.99945 -9.82882 -9.34465 -8.45749 -5.93921 1.27389 1.40048 1.42230 1.52511 1.63149 2.07888 2.29814 2.90729 3.07850 3.21955 3.31218 3.48255 3.56798 3.60317 3.61757 3.77274 4.02240 4.14283 4.24551 4.28080 4.31839 4.40485 4.43367 4.49604 4.53047 4.59260 4.62833 4.67533 4.70768 4.78121 4.86801 4.94500 4.98775 5.03421 5.13256 5.20424 5.25802 5.31440 5.35039 5.36193 5.42020 5.89710 6.11218 6.29092 6.35772 6.62009 6.87987 7.14359 7.58593 8.14454 8.71212 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.034477 B = 0.002058 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.930778 B =13603.887321 C =13932.244700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C -0.144 4.144 4 C 0.086 3.914 5 H 0.137 0.863 6 F -0.204 7.204 7 C 0.504 3.496 8 O -0.570 6.570 9 N -0.602 5.602 10 C 0.091 3.909 11 C -0.121 4.121 12 C 0.081 3.919 13 H 0.081 0.919 14 N -0.670 5.670 15 C 0.068 3.932 16 C 0.436 3.564 17 O -0.625 6.625 18 N -0.573 5.573 19 C -0.333 4.333 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.918 5.918 23 Si 0.990 3.010 24 H -0.270 1.270 25 H -0.273 1.273 26 H -0.273 1.273 27 C 0.139 3.861 28 H 0.076 0.924 29 C -0.144 4.144 30 H 0.077 0.923 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.345 0.655 42 H 0.071 0.929 43 H 0.111 0.889 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.064 0.936 47 H 0.043 0.957 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.556 23.844 -12.748 27.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.133 4.133 3 C -0.202 4.202 4 C 0.047 3.953 5 H 0.154 0.846 6 F -0.185 7.185 7 C 0.291 3.709 8 O -0.449 6.449 9 N -0.335 5.335 10 C -0.030 4.030 11 C -0.160 4.160 12 C -0.029 4.029 13 H 0.099 0.901 14 N -0.304 5.304 15 C -0.065 4.065 16 C 0.224 3.776 17 O -0.512 6.512 18 N -0.210 5.210 19 C -0.463 4.463 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.559 5.559 23 Si 0.814 3.186 24 H -0.194 1.194 25 H -0.199 1.199 26 H -0.199 1.199 27 C 0.035 3.965 28 H 0.094 0.906 29 C -0.202 4.202 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.127 0.873 38 H 0.119 0.881 39 H 0.128 0.872 40 H 0.088 0.912 41 H 0.166 0.834 42 H 0.088 0.912 43 H 0.129 0.871 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.062 0.938 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.781 23.301 -12.841 26.750 hybrid contribution -0.568 -1.463 -0.048 1.570 sum 2.213 21.838 -12.889 25.454 Atomic orbital electron populations 1.21819 0.91818 1.01983 1.04602 1.21635 0.98550 0.97880 0.95190 1.21814 1.01285 0.93068 1.03988 1.21953 0.76937 0.91914 1.04470 0.84572 1.92843 1.31211 1.96566 1.97883 1.21125 0.78353 0.90680 0.80693 1.90710 1.54834 1.62317 1.37001 1.48708 1.44878 1.11030 1.28880 1.22806 0.99759 0.95101 0.85369 1.22899 1.03187 0.92868 0.97019 1.22617 0.97671 0.90406 0.92210 0.90118 1.60271 1.45591 1.04594 1.19944 1.21552 0.93849 0.94508 0.96545 1.20957 0.84204 0.89412 0.83017 1.90507 1.31512 1.61318 1.67843 1.41909 1.24017 1.20129 1.34962 1.19595 1.09506 0.98340 1.18878 0.90536 1.25990 0.94968 1.02692 0.97548 1.69654 1.13108 1.39989 1.33180 0.85030 0.78033 0.77583 0.77946 1.19441 1.19856 1.19883 1.21600 0.95042 0.81632 0.98184 0.90632 1.21815 0.98010 0.99344 1.01040 0.90426 0.93845 0.89464 0.91627 0.92919 0.90621 0.90198 0.87334 0.88127 0.87180 0.91166 0.83427 0.91163 0.87122 0.76853 0.91308 0.91692 0.93798 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.01 71.98 0.65 -0.67 16 2 C -0.11 -1.53 2.72 -10.79 -0.03 -1.56 16 3 C -0.14 -1.37 9.09 71.98 0.65 -0.71 16 4 C 0.09 1.43 3.16 29.84 0.09 1.52 16 5 H 0.14 1.21 6.05 -2.39 -0.01 1.20 16 6 F -0.20 -4.65 16.25 44.97 0.73 -3.92 16 7 C 0.50 11.74 5.75 87.65 0.50 12.24 16 8 O -0.57 -18.69 15.80 -3.05 -0.05 -18.74 16 9 N -0.60 -11.46 3.09 -787.36 -2.43 -13.89 16 10 C 0.09 0.97 6.44 86.85 0.56 1.53 16 11 C -0.12 -1.81 6.35 31.98 0.20 -1.61 16 12 C 0.08 1.58 3.08 46.11 0.14 1.73 16 13 H 0.08 1.27 8.01 -2.39 -0.02 1.25 16 14 N -0.67 -19.00 5.04 -489.45 -2.47 -21.47 16 15 C 0.07 2.06 6.02 85.56 0.51 2.57 16 16 C 0.44 19.90 7.82 87.66 0.69 20.59 16 17 O -0.63 -34.02 15.78 -3.06 -0.05 -34.07 16 18 N -0.57 -28.45 5.29 -306.98 -1.62 -30.07 16 19 C -0.33 -18.68 9.68 84.04 0.81 -17.87 16 20 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 21 C -0.01 -0.64 5.50 84.92 0.47 -0.17 16 22 N -0.92 -48.54 13.05 21.66 0.28 -48.26 16 23 Si 0.99 42.58 29.55 68.60 2.03 44.61 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 C 0.14 3.09 3.44 45.29 0.16 3.25 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 C -0.14 -4.07 8.32 71.98 0.60 -3.47 16 30 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.04 0.54 7.39 -2.39 -0.02 0.53 16 32 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.07 1.23 8.04 -2.39 -0.02 1.21 16 34 H 0.05 0.64 7.53 -2.39 -0.02 0.62 16 35 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.10 0.70 6.87 -2.38 -0.02 0.68 16 39 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.35 10.83 6.67 -89.70 -0.60 10.23 16 42 H 0.07 1.82 8.11 -2.39 -0.02 1.80 16 43 H 0.11 2.89 7.85 -2.39 -0.02 2.88 16 44 H 0.40 18.51 7.90 -92.71 -0.73 17.78 16 45 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 46 H 0.06 1.88 6.67 -2.39 -0.02 1.87 16 47 H 0.04 1.39 6.62 -2.39 -0.02 1.38 16 48 H 0.05 1.64 8.13 -2.39 -0.02 1.63 16 Total: -1.00 -75.42 388.00 2.09 -73.34 By element: Atomic # 1 Polarization: 35.45 SS G_CDS: -0.35 Total: 35.10 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: 6.01 Total: 17.36 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -6.24 Total: -113.69 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -0.10 Total: -52.81 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.73 Total: -3.92 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -75.42 2.09 -73.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179381349.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.557 kcal (2) G-P(sol) polarization free energy of solvation -75.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds