Wall clock time and date at job start Tue Mar 31 2020 06:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00314 * 2 1 4 4 H 1.48497 * 109.47168 * 270.00348 * 3 2 1 5 5 H 1.48503 * 109.46901 * 29.99997 * 3 2 1 6 6 H 1.48495 * 109.47379 * 150.00078 * 3 2 1 7 7 C 1.37877 * 119.99633 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00526 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99868 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47387 * 180.02562 * 9 7 2 11 11 C 1.46892 * 111.00117 * 169.99862 * 10 9 7 12 12 C 1.53237 * 109.34077 * 187.24964 * 11 10 9 13 13 N 1.47078 * 108.52154 * 306.17440 * 12 11 10 14 14 C 1.34780 * 120.87846 * 231.18239 * 13 12 11 15 15 O 1.21286 * 119.99769 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99759 * 179.97438 * 14 13 12 17 17 F 1.39895 * 109.47142 * 60.00484 * 16 14 13 18 18 F 1.39899 * 109.47034 * 299.99945 * 16 14 13 19 19 S 1.81397 * 109.46717 * 180.02562 * 16 14 13 20 20 O 1.42102 * 110.54050 * 180.02562 * 19 16 14 21 21 O 1.42097 * 110.54728 * 43.24977 * 19 16 14 22 22 F 1.61007 * 104.45183 * 291.62321 * 19 16 14 23 23 C 1.47075 * 118.23702 * 51.45602 * 13 12 11 24 24 C 1.46897 * 110.99711 * 294.29989 * 10 9 7 25 25 H 0.97002 * 119.99980 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46958 * 59.99612 * 9 7 2 27 27 H 1.09010 * 109.46973 * 300.00029 * 9 7 2 28 28 H 1.08998 * 109.49396 * 67.29120 * 11 10 9 29 29 H 1.09001 * 109.49753 * 307.21201 * 11 10 9 30 30 H 1.08996 * 109.62889 * 186.45828 * 12 11 10 31 31 H 1.09000 * 109.62425 * 65.88525 * 12 11 10 32 32 H 1.08991 * 109.63135 * 68.25611 * 23 13 12 33 33 H 1.09008 * 109.62212 * 188.83186 * 23 13 12 34 34 H 1.09002 * 109.49298 * 292.70818 * 24 10 9 35 35 H 1.09001 * 109.49525 * 52.78675 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 4.0012 -2.5792 0.0001 11 6 5.4498 -2.6254 -0.2386 12 6 5.8895 -4.0832 -0.4112 13 7 5.4263 -4.8519 0.7540 14 6 6.2767 -5.6316 1.4508 15 8 7.4411 -5.7057 1.1196 16 6 5.7809 -6.4103 2.6419 17 9 4.7711 -7.2897 2.2367 18 9 5.2725 -5.5254 3.5988 19 16 7.1530 -7.3544 3.3607 20 8 6.7099 -8.0988 4.4871 21 8 8.3273 -6.5568 3.4251 22 9 7.4935 -8.4738 2.2547 23 6 4.0093 -4.7520 1.1350 24 6 3.6450 -3.2633 1.2503 25 1 -0.4850 0.8401 0.0004 26 1 3.8751 -0.6797 0.8894 27 1 3.8745 -0.6809 -0.8906 28 1 5.9726 -2.1859 0.6108 29 1 5.6877 -2.0643 -1.1424 30 1 6.9765 -4.1327 -0.4741 31 1 5.4483 -4.4935 -1.3195 32 1 3.3909 -5.2254 0.3726 33 1 3.8527 -5.2440 2.0950 34 1 4.1930 -2.8149 2.0791 35 1 2.5738 -3.1649 1.4264 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179616402.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:02 Heat of formation + Delta-G solvation = -206.813242 kcal Electronic energy + Delta-G solvation = -27644.335964 eV Core-core repulsion = 22970.884025 eV Total energy + Delta-G solvation = -4673.451939 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.069 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -50.28208 -48.99934 -48.12898 -40.63542 -38.56488 -38.02661 -37.31350 -35.00602 -32.58110 -31.37232 -29.83206 -28.65213 -25.93903 -23.87645 -22.70817 -21.44793 -21.10208 -20.05067 -19.81764 -19.08739 -18.46459 -17.91226 -17.24191 -17.08416 -16.78779 -16.04599 -15.65101 -15.25627 -15.01156 -14.97051 -14.88272 -14.77214 -14.72687 -14.52052 -14.27369 -13.87877 -13.78609 -13.64031 -13.35264 -13.31300 -13.18191 -12.56265 -12.46266 -12.23311 -11.78198 -11.46367 -11.39757 -11.04720 -10.77513 -10.61737 -10.41305 -10.04083 -9.49274 -9.12424 -8.70130 -7.69314 -6.18515 -4.17690 -1.62960 1.26583 1.53617 1.80237 2.06374 2.73051 2.95239 3.19014 3.27254 3.28097 3.30066 3.47688 4.29781 4.37015 4.78540 4.96755 5.07396 5.14560 5.28227 5.40502 5.41949 5.53933 5.90200 5.96456 6.10038 6.26101 6.60241 6.67134 6.75145 7.05719 7.37131 7.60351 7.76105 8.46956 8.87400 9.42188 10.94114 Molecular weight = 330.07amu Principal moments of inertia in cm(-1) A = 0.028639 B = 0.003218 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.438987 B = 8698.808412 C = 8986.482385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.516 4.516 8 H 0.082 0.918 9 C 0.163 3.837 10 N -0.527 5.527 11 C 0.036 3.964 12 C 0.113 3.887 13 N -0.562 5.562 14 C 0.481 3.519 15 O -0.499 6.499 16 C -0.220 4.220 17 F -0.142 7.142 18 F -0.134 7.134 19 S 2.605 3.395 20 O -0.873 6.873 21 O -0.849 6.849 22 F -0.443 7.443 23 C 0.092 3.908 24 C 0.050 3.950 25 H 0.265 0.735 26 H -0.009 1.009 27 H 0.028 0.972 28 H 0.033 0.967 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.032 0.968 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.455 -14.664 4.883 20.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.554 4.554 8 H 0.100 0.900 9 C 0.037 3.963 10 N -0.252 5.252 11 C -0.093 4.093 12 C -0.008 4.008 13 N -0.292 5.292 14 C 0.261 3.739 15 O -0.376 6.376 16 C -0.336 4.336 17 F -0.123 7.123 18 F -0.116 7.116 19 S 2.678 3.322 20 O -0.872 6.872 21 O -0.848 6.848 22 F -0.443 7.443 23 C -0.030 4.030 24 C -0.079 4.079 25 H 0.075 0.925 26 H 0.009 0.991 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.050 0.950 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 14.050 -15.093 4.554 21.118 hybrid contribution -0.290 1.821 0.393 1.885 sum 13.760 -13.273 4.947 19.748 Atomic orbital electron populations 1.69880 1.06138 1.27062 1.50371 1.24885 0.94739 0.98899 0.94593 0.86868 0.80250 0.83989 0.78674 1.20047 1.21083 1.19340 1.20970 0.88448 0.94808 1.51223 0.90038 1.20196 0.97317 0.83303 0.95462 1.61936 1.09879 1.19766 1.33600 1.22492 0.90656 0.94477 1.01721 1.22132 1.01040 0.91161 0.86504 1.48262 1.10625 1.41606 1.28737 1.19933 0.87142 0.82806 0.84060 1.90960 1.14920 1.64393 1.67322 1.34203 1.05438 0.96326 0.97601 1.93218 1.61543 1.66508 1.91026 1.93213 1.88122 1.68248 1.61972 1.07945 0.76305 0.74717 0.73186 1.93841 1.81730 1.67695 1.43906 1.93860 1.38156 1.69348 1.83392 1.93675 1.93543 1.76804 1.80255 1.22586 0.78771 0.99712 1.01882 1.22456 1.03765 0.90508 0.91140 0.92481 0.99105 0.95378 0.94900 0.89112 0.88247 0.89163 0.88709 0.89487 0.95003 0.87100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.19 13.96 55.43 0.77 -25.42 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 20.45 27.47 -169.99 -4.67 15.78 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 7 C -0.52 -13.62 8.96 -34.44 -0.31 -13.93 16 8 H 0.08 2.32 7.37 -52.49 -0.39 1.93 16 9 C 0.16 3.62 3.79 -4.97 -0.02 3.60 16 10 N -0.53 -9.72 4.62 -235.47 -1.09 -10.81 16 11 C 0.04 0.53 5.62 -3.71 -0.02 0.51 16 12 C 0.11 1.43 6.60 -3.60 -0.02 1.41 16 13 N -0.56 -7.48 3.00 -172.19 -0.52 -7.99 16 14 C 0.48 6.17 7.18 -10.98 -0.08 6.09 16 15 O -0.50 -7.01 14.37 -14.22 -0.20 -7.22 16 16 C -0.22 -2.33 1.91 36.01 0.07 -2.26 16 17 F -0.14 -1.39 15.79 2.25 0.04 -1.36 16 18 F -0.13 -1.44 15.43 2.25 0.03 -1.41 16 19 S 2.61 24.27 5.74 -107.50 -0.62 23.66 16 20 O -0.87 -8.97 18.16 -57.53 -1.04 -10.01 16 21 O -0.85 -9.89 16.81 -65.61 -1.10 -11.00 16 22 F -0.44 -3.95 17.85 2.25 0.04 -3.91 16 23 C 0.09 1.24 6.01 -3.37 -0.02 1.22 16 24 C 0.05 0.84 5.47 -3.47 -0.02 0.82 16 25 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 26 H -0.01 -0.20 7.18 -51.93 -0.37 -0.57 16 27 H 0.03 0.62 7.40 -51.92 -0.38 0.24 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 1.25 7.99 -51.93 -0.41 0.83 16 30 H 0.10 1.16 7.06 -51.93 -0.37 0.80 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.09 1.04 4.74 -51.92 -0.25 0.79 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.11 2.06 6.67 -51.93 -0.35 1.71 16 LS Contribution 314.24 15.07 4.74 4.74 Total: -1.00 -31.69 314.24 -7.52 -39.20 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: -3.38 Total: -3.57 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -0.52 Total: -0.69 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: -0.83 Total: -44.22 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -2.35 Total: -28.23 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 0.11 Total: -6.67 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.67 Total: 15.78 kcal Atomic # 16 Polarization: 24.27 SS G_CDS: -0.62 Total: 23.66 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.69 -7.52 -39.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179616402.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.609 kcal (2) G-P(sol) polarization free energy of solvation -31.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds