Wall clock time and date at job start Tue Mar 31 2020 04:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99824 * 2 1 4 4 C 1.53006 * 109.46752 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.47256 * 65.00003 * 4 3 2 6 6 C 1.42891 * 113.99823 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47131 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99875 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00356 * 179.97438 * 7 6 5 10 10 C 1.47024 * 125.64539 * 0.02669 * 9 7 6 11 11 C 1.54327 * 107.26774 * 181.01767 * 10 9 7 12 12 C 1.55157 * 102.94400 * 22.19497 * 11 10 9 13 13 H 1.08996 * 111.00331 * 82.60963 * 12 11 10 14 14 N 1.46897 * 111.00165 * 206.42318 * 12 11 10 15 15 C 1.46903 * 110.99495 * 204.99929 * 14 12 11 16 16 C 1.50706 * 109.46934 * 180.02562 * 15 14 12 17 17 O 1.21292 * 119.99906 * 359.97438 * 16 15 14 18 18 N 1.34771 * 119.99883 * 180.02562 * 16 15 14 19 19 C 1.37104 * 119.99883 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00249 * 359.97438 * 19 18 16 21 21 C 1.38954 * 120.00241 * 179.97438 * 19 18 16 22 22 N 1.31420 * 119.99472 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00203 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46979 * 60.00216 * 23 21 19 25 25 H 1.48494 * 109.46982 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47359 * 300.00420 * 23 21 19 27 27 C 1.47421 * 125.64975 * 179.71238 * 9 7 6 28 28 H 1.08993 * 109.47444 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46688 * 300.00244 * 1 2 3 30 30 H 1.09002 * 109.47367 * 59.99723 * 1 2 3 31 31 H 1.08993 * 109.47732 * 60.00254 * 3 2 1 32 32 H 1.09000 * 109.47141 * 299.99893 * 3 2 1 33 33 H 1.09004 * 109.46579 * 184.99441 * 4 3 2 34 34 H 1.08992 * 109.47046 * 304.99625 * 4 3 2 35 35 H 1.09007 * 109.47137 * 299.99376 * 6 5 4 36 36 H 1.08997 * 109.47704 * 59.99595 * 6 5 4 37 37 H 1.09001 * 109.88347 * 300.43559 * 10 9 7 38 38 H 1.09000 * 109.88454 * 61.60569 * 10 9 7 39 39 H 1.09004 * 110.71674 * 140.55695 * 11 10 9 40 40 H 1.08994 * 110.72345 * 263.64822 * 11 10 9 41 41 H 1.00899 * 110.99925 * 328.94707 * 14 12 11 42 42 H 1.09004 * 109.47286 * 299.99389 * 15 14 12 43 43 H 1.08998 * 109.47381 * 60.00361 * 15 14 12 44 44 H 0.96999 * 120.00206 * 359.97438 * 18 16 15 45 45 H 0.97002 * 119.99011 * 179.97438 * 22 21 19 46 46 H 1.09000 * 110.37053 * 274.74671 * 27 9 7 47 47 H 1.09004 * 110.36705 * 37.07462 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9649 0.5796 -1.2220 6 6 5.3810 0.4191 -1.3245 7 6 5.7193 -0.2253 -2.6442 8 8 4.8346 -0.5187 -3.4202 9 7 7.0049 -0.4756 -2.9620 10 6 8.1705 -0.1735 -2.1185 11 6 9.4274 -0.6096 -2.9006 12 6 8.9371 -0.6123 -4.3727 13 1 8.9716 0.3908 -4.7978 14 7 9.7189 -1.5530 -5.1862 15 6 9.7010 -1.1646 -6.6029 16 6 10.5109 -2.1509 -7.4044 17 8 11.0504 -3.0851 -6.8500 18 7 10.6366 -1.9943 -8.7371 19 6 11.3739 -2.8913 -9.4662 20 1 11.8543 -3.7232 -8.9725 21 6 11.5031 -2.7302 -10.8403 22 7 10.9190 -1.7177 -11.4409 23 14 12.5082 -3.9519 -11.8335 24 1 11.9250 -5.3095 -11.6848 25 1 12.4904 -3.5592 -13.2655 26 1 13.9087 -3.9581 -11.3398 27 6 7.4747 -1.1037 -4.2103 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6887 1.8465 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.9785 2.1766 0.0888 34 1 3.8514 0.5683 0.8409 35 1 5.8628 1.3950 -1.2623 36 1 5.7350 -0.2134 -0.5105 37 1 8.2134 0.8965 -1.9148 38 1 8.1050 -0.7288 -1.1828 39 1 10.2351 0.1095 -2.7645 40 1 9.7450 -1.6065 -2.5952 41 1 10.6650 -1.6276 -4.8437 42 1 8.6730 -1.1598 -6.9654 43 1 10.1295 -0.1684 -6.7120 44 1 10.2055 -1.2470 -9.1804 45 1 11.0095 -1.6051 -12.4001 46 1 7.4445 -2.1898 -4.1233 47 1 6.8679 -0.7727 -5.0532 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181698129.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:35 Heat of formation + Delta-G solvation = -147.372021 kcal Electronic energy + Delta-G solvation = -27244.295647 eV Core-core repulsion = 23041.909993 eV Total energy + Delta-G solvation = -4202.385654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.29279 -38.86121 -38.34831 -37.76588 -37.04590 -34.77283 -33.78941 -31.41812 -31.17691 -30.75369 -29.18854 -27.67661 -26.59997 -25.91326 -24.14241 -23.01265 -22.98169 -20.83897 -19.67975 -19.20381 -17.89450 -17.67793 -17.31838 -17.10767 -16.78004 -16.03822 -15.95889 -15.70976 -15.48918 -15.15059 -15.02041 -14.65690 -14.40544 -14.06303 -13.71535 -13.52047 -13.44863 -13.32956 -13.06937 -12.73789 -12.57699 -12.34049 -12.26434 -11.85521 -11.78675 -11.67317 -11.49688 -11.44729 -11.24202 -11.02826 -10.88865 -10.43513 -10.20760 -10.13218 -10.06261 -9.91358 -9.49637 -8.83156 -8.49392 -8.15979 -7.96082 -6.41050 -3.82074 2.40474 2.45184 3.20992 3.26855 3.31134 3.36191 3.47636 3.90131 4.04256 4.14939 4.24663 4.40704 4.52957 4.63961 4.68510 4.72205 4.74719 4.84656 4.90278 4.93944 5.01061 5.06141 5.07460 5.11717 5.23167 5.26882 5.27169 5.32830 5.34412 5.58689 5.72211 5.76758 5.85130 5.92432 6.00181 6.06396 6.27383 6.62517 6.78779 7.13788 7.29130 7.55615 7.57057 8.01597 8.06175 8.61198 9.18016 9.54311 10.05422 10.76501 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.024479 B = 0.001659 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.583084 B =16870.622123 C =17600.272906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.062 3.938 5 O -0.355 6.355 6 C 0.050 3.950 7 C 0.528 3.472 8 O -0.515 6.515 9 N -0.620 5.620 10 C 0.102 3.898 11 C -0.136 4.136 12 C 0.073 3.927 13 H 0.063 0.937 14 N -0.656 5.656 15 C 0.049 3.951 16 C 0.440 3.560 17 O -0.584 6.584 18 N -0.562 5.562 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.932 3.068 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.117 3.883 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.355 0.645 42 H 0.087 0.913 43 H 0.046 0.954 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.083 0.917 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.670 11.891 25.400 30.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.014 4.014 4 C -0.015 4.015 5 O -0.273 6.273 6 C -0.030 4.030 7 C 0.315 3.685 8 O -0.389 6.389 9 N -0.357 5.357 10 C -0.022 4.022 11 C -0.174 4.174 12 C -0.038 4.038 13 H 0.081 0.919 14 N -0.290 5.290 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.199 5.199 19 C -0.431 4.431 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.759 3.241 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.005 4.005 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.176 0.824 42 H 0.105 0.895 43 H 0.064 0.936 44 H 0.226 0.774 45 H 0.082 0.918 46 H 0.102 0.898 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.414 10.498 24.939 30.201 hybrid contribution 0.822 1.080 -0.596 1.482 sum -12.592 11.577 24.343 29.752 Atomic orbital electron populations 1.22755 0.80928 1.03013 0.99837 1.87982 1.19726 1.27078 1.95360 1.22540 0.92062 0.85768 1.01015 1.22604 0.93845 0.97563 0.87491 1.88093 1.19405 1.82067 1.37751 1.22147 0.84155 1.00655 0.96008 1.19825 0.81111 0.79388 0.88152 1.90766 1.45795 1.51217 1.51119 1.48374 1.05008 1.61856 1.20500 1.22047 0.85196 1.00485 0.94448 1.22852 0.96510 1.03579 0.94435 1.22698 0.93621 0.94692 0.92788 0.91907 1.59921 1.19494 1.48374 1.01189 1.21768 1.01236 0.96640 0.88684 1.19757 0.86180 0.88329 0.83169 1.90523 1.51764 1.34107 1.70420 1.41854 1.45957 1.26604 1.05458 1.19662 1.26856 1.07087 0.89452 0.87938 1.25271 0.98018 0.97634 0.96970 1.69612 1.43890 1.29596 1.11127 0.85904 0.79917 0.80251 0.78067 1.19860 1.20985 1.19933 1.22339 0.93814 0.98625 0.85765 0.89480 0.94242 0.93883 0.91647 0.92163 0.91499 0.92128 0.90390 0.90241 0.91283 0.91059 0.89790 0.89057 0.82369 0.89461 0.93618 0.77430 0.91805 0.89847 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.38 -3.94 10.67 -40.08 -0.43 -4.37 16 3 C 0.06 0.47 6.32 37.16 0.23 0.70 16 4 C 0.06 0.45 6.32 37.16 0.23 0.68 16 5 O -0.36 -4.13 9.84 -59.73 -0.59 -4.72 16 6 C 0.05 0.46 5.61 36.01 0.20 0.66 16 7 C 0.53 6.94 7.93 -10.99 -0.09 6.85 16 8 O -0.51 -9.38 16.75 -14.35 -0.24 -9.62 16 9 N -0.62 -6.97 3.32 -170.38 -0.57 -7.54 16 10 C 0.10 0.74 6.49 -3.06 -0.02 0.72 16 11 C -0.14 -1.11 6.35 -24.89 -0.16 -1.27 16 12 C 0.07 0.84 3.40 -65.44 -0.22 0.62 16 13 H 0.06 0.70 7.83 -51.93 -0.41 0.29 16 14 N -0.66 -9.94 6.03 -105.60 -0.64 -10.58 16 15 C 0.05 0.85 6.03 -4.97 -0.03 0.82 16 16 C 0.44 10.30 7.82 -10.99 -0.09 10.21 16 17 O -0.58 -15.67 15.78 5.55 0.09 -15.59 16 18 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 19 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.61 5.50 -17.46 -0.10 0.52 16 22 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 23 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.12 1.53 6.61 -2.41 -0.02 1.51 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.19 8.14 -51.92 -0.42 -0.23 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.36 5.37 8.14 -39.29 -0.32 5.05 16 42 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 44 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.08 1.13 8.03 -51.93 -0.42 0.71 16 LS Contribution 398.25 15.07 6.00 6.00 Total: -1.00 -36.87 398.25 -7.54 -44.41 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -7.74 Total: 9.29 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 0.92 Total: 14.80 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.54 Total: -56.31 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -1.17 Total: -34.30 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.87 -7.54 -44.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181698129.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.959 kcal (2) G-P(sol) polarization free energy of solvation -36.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds