Wall clock time and date at job start Tue Mar 31 2020 06:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46494 * 120.00263 * 2 1 4 4 C 1.50693 * 109.47218 * 85.00101 * 3 2 1 5 5 O 1.21287 * 120.00022 * 359.97438 * 4 3 2 6 6 N 1.34786 * 120.00061 * 180.02562 * 4 3 2 7 7 C 1.40008 * 119.99999 * 175.68404 * 6 4 3 8 8 C 1.39361 * 119.90927 * 215.21009 * 7 6 4 9 9 C 1.38368 * 120.47118 * 180.02562 * 8 7 6 10 10 C 1.38007 * 120.28556 * 0.02562 * 9 8 7 11 11 F 1.35100 * 120.09668 * 179.97438 * 10 9 8 12 12 C 1.41011 * 119.81102 * 359.97438 * 10 9 8 13 13 C 1.41298 * 120.22397 * 179.97438 * 12 10 9 14 14 H 1.07996 * 120.00359 * 324.96401 * 13 12 10 15 15 C 1.39922 * 119.99605 * 145.24091 * 13 12 10 16 16 N 1.30853 * 120.00210 * 4.44020 * 15 13 12 17 17 Si 1.86798 * 120.00265 * 184.44364 * 15 13 12 18 18 H 1.48504 * 109.47147 * 59.99253 * 17 15 13 19 19 H 1.48500 * 109.47401 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46753 * 300.00209 * 17 15 13 21 21 C 1.38143 * 119.90899 * 35.44042 * 7 6 4 22 22 S 1.65599 * 119.99773 * 180.02562 * 2 1 3 23 23 C 1.81400 * 104.45097 * 269.99727 * 22 2 1 24 24 O 1.42098 * 104.28076 * 26.07022 * 22 2 1 25 25 O 1.42099 * 104.28154 * 153.92878 * 22 2 1 26 26 H 1.08997 * 109.46938 * 89.99907 * 1 2 3 27 27 H 1.09001 * 109.47192 * 210.00262 * 1 2 3 28 28 H 1.08998 * 109.46940 * 330.00378 * 1 2 3 29 29 H 1.09004 * 109.47326 * 324.99740 * 3 2 1 30 30 H 1.09006 * 109.47337 * 205.00516 * 3 2 1 31 31 H 0.96997 * 119.99825 * 355.68352 * 6 4 3 32 32 H 1.08001 * 119.76650 * 0.02562 * 8 7 6 33 33 H 1.08004 * 119.85506 * 179.97438 * 9 8 7 34 34 H 0.96995 * 120.00194 * 180.02562 * 16 15 13 35 35 H 1.08002 * 120.14695 * 0.02585 * 21 7 6 36 36 H 1.09007 * 109.46862 * 59.99950 * 23 22 2 37 37 H 1.08993 * 109.47655 * 179.97438 * 23 22 2 38 38 H 1.09000 * 109.47448 * 300.00558 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3415 1.7656 1.4153 5 8 1.8774 1.1234 2.3337 6 7 2.9851 2.9242 1.6606 7 6 3.0407 3.4317 2.9643 8 6 2.9992 4.8084 3.1764 9 6 3.0539 5.3226 4.4599 10 6 3.1508 4.4758 5.5453 11 9 3.2045 4.9820 6.7967 12 6 3.1937 3.0808 5.3445 13 6 3.2934 2.2058 6.4495 14 1 3.8716 2.4930 7.3152 15 6 2.6477 0.9648 6.4197 16 7 2.0244 0.5775 5.3363 17 14 2.6755 -0.1390 7.9264 18 1 2.0428 0.5674 9.0692 19 1 1.9243 -1.3874 7.6394 20 1 4.0812 -0.4740 8.2687 21 6 3.1413 2.5665 4.0366 22 16 2.2929 -1.4342 -0.0006 23 6 2.5193 -1.8270 1.7558 24 8 1.3969 -2.3559 -0.6062 25 8 3.5395 -1.1190 -0.6057 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6502 2.0043 -0.5895 30 1 3.1858 1.1176 -0.4344 31 1 3.4098 3.4063 0.9340 32 1 2.9238 5.4788 2.3330 33 1 3.0214 6.3913 4.6127 34 1 1.5765 -0.2826 5.3158 35 1 3.1776 1.4998 3.8713 36 1 1.5451 -1.9197 2.2358 37 1 3.0618 -2.7675 1.8508 38 1 3.0866 -1.0298 2.2362 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182879965.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:02 Heat of formation + Delta-G solvation = -114.784044 kcal Electronic energy + Delta-G solvation = -26813.874543 eV Core-core repulsion = 22698.642819 eV Total energy + Delta-G solvation = -4115.231724 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.24363 -39.75635 -37.35854 -37.13796 -36.04624 -35.57915 -34.29801 -33.20620 -29.79856 -29.44055 -29.21247 -27.46864 -25.44890 -25.03785 -21.90141 -21.09439 -19.76983 -18.90979 -17.95969 -17.65663 -16.97958 -16.43117 -16.06817 -15.99647 -15.77260 -15.17268 -14.71710 -14.50007 -14.25464 -14.01611 -13.88289 -13.30367 -13.17106 -12.95932 -12.85984 -12.68117 -12.59380 -12.34233 -12.11038 -11.91793 -11.85399 -11.61817 -11.55469 -11.49380 -11.19762 -11.00809 -10.97797 -10.66537 -10.42681 -9.82157 -9.61539 -9.25653 -9.10140 -8.70726 -7.50672 -6.97878 -6.57866 -4.46393 0.29654 2.39705 2.50626 2.72997 3.04457 3.05856 3.09333 3.21067 3.60045 3.86145 3.93592 4.17261 4.53727 4.60822 4.99497 5.02103 5.15847 5.26195 5.28649 5.40325 5.54453 5.75828 5.82506 5.87081 6.04651 6.06974 6.31332 6.32380 6.69116 6.83986 6.91297 7.18469 7.36935 7.47039 7.64979 7.96683 8.04980 8.22155 8.44088 8.75096 8.78210 8.80143 10.22399 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.004624 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.712273 B = 6053.320237 C = 7673.835712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.981 5.981 3 C 0.098 3.902 4 C 0.464 3.536 5 O -0.474 6.474 6 N -0.668 5.668 7 C 0.130 3.870 8 C -0.233 4.233 9 C -0.116 4.116 10 C -0.031 4.031 11 F -0.163 7.163 12 C 0.090 3.910 13 C -0.456 4.456 14 H 0.078 0.922 15 C 0.069 3.931 16 N -0.772 5.772 17 Si 0.913 3.087 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.266 1.266 21 C -0.130 4.130 22 S 2.611 3.389 23 C -0.656 4.656 24 O -0.961 6.961 25 O -0.963 6.963 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.398 0.602 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.280 0.720 35 H 0.158 0.842 36 H 0.131 0.869 37 H 0.119 0.881 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.168 -1.970 -11.027 11.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.817 5.817 3 C -0.032 4.032 4 C 0.247 3.753 5 O -0.346 6.346 6 N -0.314 5.314 7 C 0.037 3.963 8 C -0.254 4.254 9 C -0.136 4.136 10 C -0.051 4.051 11 F -0.143 7.143 12 C 0.086 3.914 13 C -0.486 4.486 14 H 0.097 0.903 15 C -0.150 4.150 16 N -0.397 5.397 17 Si 0.737 3.263 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.190 1.190 21 C -0.152 4.152 22 S 2.705 3.295 23 C -0.808 4.808 24 O -0.952 6.952 25 O -0.954 6.954 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.128 0.872 30 H 0.138 0.862 31 H 0.232 0.768 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.091 0.909 35 H 0.175 0.825 36 H 0.150 0.850 37 H 0.138 0.862 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.449 -3.162 -11.220 11.747 hybrid contribution -0.049 0.227 1.331 1.351 sum -1.498 -2.935 -9.889 10.424 Atomic orbital electron populations 1.21424 0.77673 1.03671 1.01601 1.57012 1.15408 1.19943 1.89323 1.21256 0.99829 0.87224 0.94883 1.21413 0.79611 0.82173 0.92075 1.90937 1.44896 1.54274 1.44467 1.43358 1.54860 1.24037 1.09149 1.17675 1.03196 0.92215 0.83200 1.19909 1.17322 0.92694 0.95487 1.20265 1.03803 0.97607 0.91885 1.18058 1.16169 0.92709 0.78178 1.91273 1.95102 1.87707 1.40169 1.17564 0.90877 0.89119 0.93823 1.19362 1.28039 0.99557 1.01619 0.90342 1.25911 0.93944 0.97718 0.97426 1.69844 1.23949 1.19669 1.26194 0.86292 0.79293 0.78847 0.81848 1.19009 1.20382 1.19020 1.21656 1.03215 1.01155 0.89140 1.04846 0.73618 0.73062 0.77942 1.30417 1.12596 1.11835 1.25905 1.93585 1.64769 1.62356 1.74475 1.93568 1.44125 1.83039 1.74629 0.92439 0.91041 0.90734 0.87170 0.86165 0.76784 0.88277 0.87846 0.90895 0.82454 0.85025 0.86235 0.84232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.07 10.20 59.85 0.61 1.68 16 2 N -0.98 -11.66 2.61 -123.06 -0.32 -11.98 16 3 C 0.10 1.09 6.12 -5.20 -0.03 1.06 16 4 C 0.46 7.23 7.73 -10.98 -0.08 7.15 16 5 O -0.47 -9.21 12.41 5.55 0.07 -9.14 16 6 N -0.67 -10.49 5.34 -9.90 -0.05 -10.54 16 7 C 0.13 2.68 6.29 -83.74 -0.53 2.16 16 8 C -0.23 -4.62 9.96 -39.12 -0.39 -5.01 16 9 C -0.12 -2.50 10.00 -39.62 -0.40 -2.90 16 10 C -0.03 -0.76 7.31 -38.62 -0.28 -1.04 16 11 F -0.16 -4.08 16.82 2.25 0.04 -4.04 16 12 C 0.09 2.36 5.55 -106.78 -0.59 1.77 16 13 C -0.46 -12.11 8.70 -37.79 -0.33 -12.43 16 14 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 15 C 0.07 1.71 5.42 -17.34 -0.09 1.61 16 16 N -0.77 -19.34 10.55 55.55 0.59 -18.75 16 17 Si 0.91 18.91 29.56 -169.99 -5.03 13.89 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 19 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 21 C -0.13 -3.19 7.30 -38.71 -0.28 -3.47 16 22 S 2.61 33.43 6.02 -107.50 -0.65 32.78 16 23 C -0.66 -8.25 10.53 101.05 1.06 -7.18 16 24 O -0.96 -14.24 17.09 -57.54 -0.98 -15.23 16 25 O -0.96 -14.36 16.53 -57.54 -0.95 -15.31 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.73 7.79 -51.93 -0.40 0.32 16 28 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 29 H 0.11 0.88 8.11 -51.93 -0.42 0.46 16 30 H 0.12 1.20 6.82 -51.93 -0.35 0.85 16 31 H 0.40 4.56 8.82 -40.82 -0.36 4.20 16 32 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 33 H 0.10 1.96 8.06 -52.48 -0.42 1.53 16 34 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 35 H 0.16 4.02 4.35 -52.49 -0.23 3.79 16 36 H 0.13 1.62 8.14 -51.92 -0.42 1.20 16 37 H 0.12 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.14 2.06 7.22 -51.92 -0.37 1.68 16 LS Contribution 341.19 15.07 5.14 5.14 Total: -1.00 -33.11 341.19 -7.70 -40.81 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -4.22 Total: 8.99 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -1.33 Total: -16.61 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.21 Total: -41.28 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -1.87 Total: -39.68 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.04 Total: -4.04 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.89 kcal Atomic # 16 Polarization: 33.43 SS G_CDS: -0.65 Total: 32.78 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.11 -7.70 -40.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182879965.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.970 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds