Wall clock time and date at job start Tue Mar 31 2020 04:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99742 * 2 1 4 4 C 1.53002 * 109.46932 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47190 * 305.46260 * 4 3 2 6 6 O 1.42897 * 109.47122 * 65.46640 * 4 3 2 7 7 C 1.42901 * 114.00045 * 269.99893 * 6 4 3 8 8 C 1.50694 * 109.46929 * 185.46973 * 4 3 2 9 9 O 1.21290 * 119.99957 * 253.35172 * 8 4 3 10 10 N 1.34785 * 120.00461 * 73.35045 * 8 4 3 11 11 C 1.47019 * 125.64213 * 355.22660 * 10 8 4 12 12 C 1.54324 * 107.26789 * 181.01457 * 11 10 8 13 13 C 1.55164 * 102.94464 * 22.19530 * 12 11 10 14 14 H 1.09003 * 110.99962 * 82.56594 * 13 12 11 15 15 N 1.46901 * 111.00687 * 206.38596 * 13 12 11 16 16 C 1.46897 * 111.00014 * 273.54636 * 15 13 12 17 17 C 1.50692 * 109.47433 * 179.97438 * 16 15 13 18 18 O 1.21296 * 119.99786 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00291 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00120 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00065 * 0.02562 * 20 19 17 22 22 C 1.38956 * 120.00318 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99672 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00265 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46979 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47435 * 119.99972 * 24 22 20 27 27 H 1.48504 * 109.46980 * 240.00153 * 24 22 20 28 28 C 1.47423 * 125.64840 * 175.18057 * 10 8 4 29 29 H 1.09009 * 109.46581 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47188 * 299.99665 * 1 2 3 31 31 H 1.08994 * 109.47127 * 60.00494 * 1 2 3 32 32 H 1.09002 * 109.47172 * 59.99882 * 3 2 1 33 33 H 1.09000 * 109.47012 * 299.99814 * 3 2 1 34 34 H 1.09001 * 109.46962 * 299.99815 * 7 6 4 35 35 H 1.08994 * 109.47206 * 59.99714 * 7 6 4 36 36 H 1.08998 * 109.46710 * 180.02562 * 7 6 4 37 37 H 1.09007 * 109.88229 * 61.60398 * 11 10 8 38 38 H 1.08995 * 109.88608 * 300.43353 * 11 10 8 39 39 H 1.08999 * 110.72231 * 140.55600 * 12 11 10 40 40 H 1.09007 * 110.72487 * 263.65474 * 12 11 10 41 41 H 1.00897 * 110.99496 * 149.58921 * 15 13 12 42 42 H 1.09008 * 109.46901 * 300.00480 * 16 15 13 43 43 H 1.09007 * 109.47262 * 59.99910 * 16 15 13 44 44 H 0.97002 * 119.99907 * 0.02562 * 19 17 16 45 45 H 0.97001 * 119.99756 * 180.02562 * 23 22 20 46 46 H 1.08996 * 110.36849 * 37.07601 * 28 10 8 47 47 H 1.09005 * 110.45507 * 274.80046 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8502 0.5618 0.8379 6 8 3.9666 0.5892 -1.2247 7 6 4.0480 -0.8368 -1.1808 8 6 4.1477 2.5550 0.1361 9 8 4.6771 3.0799 -0.8207 10 7 4.1071 3.1973 1.3203 11 6 3.4152 2.7243 2.5282 12 6 3.6206 3.7934 3.6221 13 6 3.9380 5.0724 2.8029 14 1 3.0226 5.5486 2.4518 15 7 4.7499 6.0123 3.5874 16 6 3.8995 6.8830 4.4099 17 6 4.7654 7.8308 5.1990 18 8 5.9723 7.7857 5.0869 19 7 4.1988 8.7292 6.0286 20 6 4.9866 9.5918 6.7461 21 1 6.0612 9.5517 6.6463 22 6 4.4025 10.5178 7.6018 23 7 3.0949 10.5663 7.7237 24 14 5.4759 11.6936 8.5789 25 1 6.9044 11.4371 8.2646 26 1 5.1336 13.0928 8.2177 27 1 5.2429 11.4861 10.0308 28 6 4.7500 4.4899 1.6191 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 4.7582 -1.1366 -0.4102 35 1 3.0660 -1.2499 -0.9505 36 1 4.3825 -1.2115 -2.1482 37 1 3.8424 1.7753 2.8525 38 1 2.3516 2.6036 2.3229 39 1 2.7107 3.9263 4.2072 40 1 4.4577 3.5284 4.2681 41 1 5.3527 6.5564 2.9886 42 1 3.2310 7.4528 3.7644 43 1 3.3105 6.2734 5.0953 44 1 3.2336 8.7655 6.1180 45 1 2.6871 11.2130 8.3207 46 1 4.6898 5.1521 0.7555 47 1 5.7899 4.3400 1.9097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185505438.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:14 Heat of formation + Delta-G solvation = -143.863866 kcal Electronic energy + Delta-G solvation = -28155.680164 eV Core-core repulsion = 23953.446635 eV Total energy + Delta-G solvation = -4202.233529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.69391 -38.99162 -38.32090 -37.76894 -37.09381 -34.86810 -33.84500 -31.78576 -31.24263 -30.49332 -28.99902 -27.48294 -26.52462 -25.95950 -24.55103 -23.81436 -22.91219 -20.73809 -19.89544 -19.25591 -17.95802 -17.92753 -17.27049 -17.05436 -16.61587 -16.33397 -16.02788 -15.58982 -15.50174 -15.20503 -14.87338 -14.47765 -14.45030 -14.07860 -13.97935 -13.69584 -13.63715 -13.25243 -13.05139 -12.87013 -12.74047 -12.40791 -12.25350 -11.94010 -11.77495 -11.73593 -11.58154 -11.49684 -11.25279 -11.10120 -10.92033 -10.36499 -10.33868 -10.25541 -10.18279 -9.84620 -9.55392 -8.95983 -8.54153 -8.20589 -8.00041 -6.45221 -3.86002 2.15517 2.28933 3.14260 3.23822 3.25282 3.32516 3.49659 3.86145 3.99868 4.13531 4.23055 4.34645 4.42708 4.45709 4.50263 4.65811 4.85023 4.87894 4.94042 5.00691 5.01911 5.07018 5.15112 5.18665 5.20453 5.24448 5.26676 5.31014 5.49078 5.56293 5.64770 5.72450 5.76250 5.86347 5.91157 6.01296 6.22563 6.52717 6.65470 7.06405 7.15020 7.50792 7.52536 7.81363 8.02821 8.57134 9.14561 9.50247 10.01299 10.72495 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.029078 B = 0.001882 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.697629 B =14877.967285 C =15509.490640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.042 3.958 4 C 0.083 3.917 5 H 0.094 0.906 6 O -0.356 6.356 7 C 0.028 3.972 8 C 0.534 3.466 9 O -0.511 6.511 10 N -0.615 5.615 11 C 0.094 3.906 12 C -0.123 4.123 13 C 0.073 3.927 14 H 0.060 0.940 15 N -0.656 5.656 16 C 0.052 3.948 17 C 0.440 3.560 18 O -0.582 6.582 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.108 3.892 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.354 0.646 42 H 0.045 0.955 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.081 0.919 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.262 -21.956 -12.869 26.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C -0.035 4.035 4 C 0.021 3.979 5 H 0.111 0.889 6 O -0.274 6.274 7 C -0.068 4.068 8 C 0.320 3.680 9 O -0.385 6.385 10 N -0.352 5.352 11 C -0.029 4.029 12 C -0.161 4.161 13 C -0.039 4.039 14 H 0.078 0.922 15 N -0.289 5.289 16 C -0.081 4.081 17 C 0.225 3.775 18 O -0.466 6.466 19 N -0.200 5.200 20 C -0.428 4.428 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.014 4.014 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.175 0.825 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.099 0.901 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.983 -22.119 -13.103 26.641 hybrid contribution -0.948 1.229 0.291 1.579 sum -7.931 -20.891 -12.812 25.758 Atomic orbital electron populations 1.22795 0.80349 1.03055 1.00375 1.87838 1.20319 1.26923 1.95516 1.23075 0.92406 0.85948 1.02099 1.21818 0.92608 0.93308 0.90202 0.88867 1.88013 1.87718 1.20494 1.31157 1.22968 1.01265 0.80073 1.02490 1.19705 0.80522 0.86180 0.81589 1.90757 1.44050 1.66648 1.37028 1.48324 1.53407 1.22693 1.10752 1.22289 0.96905 0.98803 0.84872 1.22727 1.03660 0.93054 0.96668 1.22666 0.95422 0.93752 0.92020 0.92235 1.60072 1.20592 1.21717 1.26524 1.21712 0.94853 0.94708 0.96809 1.19764 0.88870 0.84238 0.84607 1.90537 1.14527 1.72844 1.68741 1.41864 1.09571 1.30662 1.37869 1.19760 0.92658 1.11082 1.19351 0.87819 1.25274 0.96099 0.98560 0.98056 1.69620 1.09064 1.37046 1.38553 0.85793 0.80042 0.79482 0.78992 1.19187 1.20766 1.20730 1.22339 0.97533 0.83964 0.97598 0.89297 0.93736 0.93774 0.91469 0.91555 0.94083 0.92157 0.89402 0.90860 0.91205 0.89905 0.88847 0.82527 0.93653 0.89472 0.77466 0.91906 0.90087 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.07 8.85 -39.60 -0.35 -3.42 16 3 C 0.04 0.34 5.51 37.16 0.20 0.55 16 4 C 0.08 0.82 2.30 -27.88 -0.06 0.75 16 5 H 0.09 0.75 7.51 -51.93 -0.39 0.36 16 6 O -0.36 -4.19 9.91 -59.31 -0.59 -4.78 16 7 C 0.03 0.23 10.71 101.05 1.08 1.31 16 8 C 0.53 6.60 7.16 -10.98 -0.08 6.52 16 9 O -0.51 -8.51 16.79 -14.00 -0.23 -8.74 16 10 N -0.61 -6.43 3.33 -170.52 -0.57 -7.00 16 11 C 0.09 0.71 6.11 -3.07 -0.02 0.70 16 12 C -0.12 -1.11 6.60 -24.89 -0.16 -1.27 16 13 C 0.07 0.80 3.32 -65.56 -0.22 0.58 16 14 H 0.06 0.63 7.92 -51.93 -0.41 0.22 16 15 N -0.66 -9.64 6.00 -105.72 -0.63 -10.27 16 16 C 0.05 0.84 6.04 -4.98 -0.03 0.81 16 17 C 0.44 10.01 7.82 -10.99 -0.09 9.92 16 18 O -0.58 -15.43 15.78 5.54 0.09 -15.34 16 19 N -0.56 -13.90 5.29 -10.97 -0.06 -13.96 16 20 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 23 N -0.90 -24.14 13.05 55.50 0.72 -23.41 16 24 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 28 C 0.11 1.22 6.40 -2.53 -0.02 1.21 16 29 H 0.09 0.34 8.14 -51.92 -0.42 -0.08 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.44 5.58 -51.93 -0.29 0.15 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16 35 H 0.06 0.46 6.41 -51.93 -0.33 0.12 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.46 8.00 -51.92 -0.42 0.04 16 38 H 0.07 0.41 5.99 -51.93 -0.31 0.10 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.35 5.48 8.23 -39.29 -0.32 5.16 16 42 H 0.05 0.67 8.09 -51.92 -0.42 0.25 16 43 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.39 9.21 7.90 -40.82 -0.32 8.88 16 45 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 46 H 0.08 0.97 7.99 -51.93 -0.42 0.56 16 47 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 388.47 15.07 5.85 5.85 Total: -1.00 -34.45 388.47 -6.67 -41.12 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -7.37 Total: 9.68 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 1.48 Total: 14.49 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.54 Total: -54.64 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -1.09 Total: -32.28 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.45 -6.67 -41.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185505438.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.745 kcal (2) G-P(sol) polarization free energy of solvation -34.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds