Wall clock time and date at job start Tue Mar 31 2020 04:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42902 * 109.47028 * 2 1 4 4 C 1.42902 * 113.99857 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46985 * 330.00751 * 4 3 2 6 6 C 1.53006 * 109.46696 * 89.99960 * 4 3 2 7 7 C 1.50692 * 109.47433 * 209.99951 * 4 3 2 8 8 O 1.21294 * 119.99678 * 0.02562 * 7 4 3 9 9 N 1.34769 * 120.00350 * 180.02562 * 7 4 3 10 10 C 1.46503 * 120.00413 * 180.02562 * 9 7 4 11 11 H 1.09006 * 110.90053 * 31.12789 * 10 9 7 12 12 C 1.54910 * 110.99041 * 267.26526 * 10 9 7 13 13 N 1.47839 * 104.79603 * 204.83162 * 12 10 9 14 14 C 1.46909 * 110.99521 * 146.35941 * 13 12 10 15 15 C 1.50702 * 109.46917 * 55.81247 * 14 13 12 16 16 O 1.21297 * 120.00073 * 6.12867 * 15 14 13 17 17 N 1.34774 * 119.99786 * 186.12630 * 15 14 13 18 18 C 1.37096 * 119.99631 * 180.02562 * 17 15 14 19 19 H 1.08005 * 120.00242 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99917 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99787 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00050 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47221 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46725 * 120.00211 * 22 20 18 25 25 H 1.48497 * 109.47358 * 240.00458 * 22 20 18 26 26 C 1.47440 * 108.56553 * 24.10157 * 13 12 10 27 27 C 1.54319 * 107.23617 * 359.00223 * 26 13 12 28 28 H 1.08995 * 110.70242 * 96.27677 * 27 26 13 29 29 O 1.42895 * 110.70645 * 219.34000 * 27 26 13 30 30 H 1.09007 * 109.47051 * 59.99651 * 1 2 3 31 31 H 1.08996 * 109.47241 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47321 * 300.00004 * 1 2 3 33 33 H 1.08998 * 109.46834 * 240.00196 * 2 1 3 34 34 H 1.09000 * 109.46674 * 119.99790 * 2 1 3 35 35 H 1.09000 * 109.47187 * 300.00017 * 6 4 3 36 36 H 1.09004 * 109.46651 * 60.00266 * 6 4 3 37 37 H 1.08997 * 109.46570 * 179.97438 * 6 4 3 38 38 H 0.97001 * 120.00073 * 359.97438 * 9 7 4 39 39 H 1.09006 * 110.37169 * 86.00484 * 12 10 9 40 40 H 1.09002 * 110.46411 * 323.71891 * 12 10 9 41 41 H 1.09005 * 109.46821 * 175.80825 * 14 13 12 42 42 H 1.08995 * 109.47163 * 295.81196 * 14 13 12 43 43 H 0.96997 * 120.00399 * 359.97438 * 17 15 14 44 44 H 0.96997 * 119.99850 * 179.97438 * 21 20 18 45 45 H 1.09010 * 109.88687 * 239.59797 * 26 13 12 46 46 H 1.09003 * 110.02785 * 118.49177 * 26 13 12 47 47 H 0.96707 * 114.00105 * 298.54558 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8632 0.6016 0.5146 6 6 3.9399 1.5002 -1.4418 7 6 3.8343 2.7264 0.7109 8 8 2.9854 3.4600 1.1718 9 7 5.1383 3.0439 0.8341 10 6 5.5305 4.2747 1.5252 11 1 4.8163 4.5246 2.3098 12 6 5.6882 5.4468 0.5246 13 7 6.6262 6.3811 1.1824 14 6 7.4744 7.0590 0.1928 15 6 6.6043 7.7532 -0.8231 16 8 5.4013 7.7840 -0.6714 17 7 7.1629 8.3398 -1.9003 18 6 6.3714 8.9718 -2.8242 19 1 5.3002 8.9992 -2.6891 20 6 6.9473 9.5771 -3.9345 21 7 8.2507 9.5433 -4.0991 22 14 5.8688 10.4375 -5.1938 23 1 4.4463 10.3342 -4.7804 24 1 6.2557 11.8686 -5.2815 25 1 6.0471 9.7943 -6.5203 26 6 7.4433 5.6237 2.1481 27 6 6.9672 4.1566 2.0984 28 1 7.6019 3.5678 1.4364 29 8 6.9430 3.5887 3.4094 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.6481 0.5842 -1.9556 36 1 3.5076 2.3587 -1.9559 37 1 5.0264 1.5867 -1.4413 38 1 5.8172 2.4571 0.4658 39 1 4.7270 5.9317 0.3536 40 1 6.1053 5.0903 -0.4173 41 1 8.1029 7.7941 0.6957 42 1 8.1045 6.3250 -0.3094 43 1 8.1250 8.3156 -2.0215 44 1 8.6527 9.9655 -4.8744 45 1 7.3002 6.0262 3.1510 46 1 8.4963 5.6814 1.8724 47 1 7.8071 3.5626 3.8428 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191246593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:29 Heat of formation + Delta-G solvation = -153.380987 kcal Electronic energy + Delta-G solvation = -28885.709337 eV Core-core repulsion = 24683.063115 eV Total energy + Delta-G solvation = -4202.646222 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.39445 -39.33122 -38.06040 -37.59621 -35.84538 -34.48367 -33.85390 -32.68087 -31.29559 -30.64187 -29.74439 -28.09619 -26.47355 -24.75920 -24.09793 -22.96232 -21.41563 -21.22650 -20.45113 -19.23812 -17.93572 -17.70792 -17.47483 -17.14663 -16.27069 -16.12669 -15.83754 -15.25680 -14.94949 -14.80768 -14.59555 -14.27119 -14.06347 -13.71262 -13.48176 -13.41280 -13.35097 -13.01503 -12.93764 -12.76884 -12.49992 -12.29935 -12.20682 -11.92628 -11.78467 -11.59926 -11.52159 -11.31857 -11.27776 -11.02696 -10.72323 -10.44684 -10.33424 -10.22813 -10.11250 -9.55724 -9.51978 -9.15180 -8.43135 -8.01099 -7.91923 -6.43127 -3.83607 2.54092 2.67152 3.16000 3.26971 3.34914 3.61351 3.80048 3.88254 4.05078 4.25822 4.36252 4.55761 4.65641 4.67573 4.72836 4.79029 4.83546 4.95411 5.04324 5.06599 5.18434 5.21564 5.28258 5.37059 5.41867 5.47003 5.48026 5.64812 5.67661 5.83922 5.86384 5.89966 5.92947 6.03345 6.23874 6.33700 6.55298 6.84357 7.12645 7.17695 7.36645 7.38589 7.54953 8.05174 8.18011 8.60111 9.17297 9.52347 10.04138 10.74698 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.010345 B = 0.003034 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.074152 B = 9226.504647 C =11322.007911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.356 6.356 4 C 0.074 3.926 5 H 0.085 0.915 6 C -0.172 4.172 7 C 0.515 3.485 8 O -0.508 6.508 9 N -0.717 5.717 10 C 0.143 3.857 11 H 0.115 0.885 12 C 0.050 3.950 13 N -0.499 5.499 14 C 0.040 3.960 15 C 0.440 3.560 16 O -0.574 6.574 17 N -0.564 5.564 18 C -0.297 4.297 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.267 1.267 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.012 3.988 27 C 0.075 3.925 28 H 0.067 0.933 29 O -0.554 6.554 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.398 0.602 39 H 0.111 0.889 40 H 0.048 0.952 41 H 0.093 0.907 42 H 0.047 0.953 43 H 0.391 0.609 44 H 0.271 0.729 45 H 0.090 0.910 46 H 0.062 0.938 47 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.255 -20.962 9.117 22.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.275 6.275 4 C 0.012 3.988 5 H 0.103 0.897 6 C -0.230 4.230 7 C 0.300 3.700 8 O -0.381 6.381 9 N -0.371 5.371 10 C 0.037 3.963 11 H 0.133 0.867 12 C -0.079 4.079 13 N -0.225 5.225 14 C -0.091 4.091 15 C 0.225 3.775 16 O -0.458 6.458 17 N -0.201 5.201 18 C -0.426 4.426 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.191 1.191 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.117 4.117 27 C 0.015 3.985 28 H 0.085 0.915 29 O -0.359 6.359 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.232 0.768 39 H 0.129 0.871 40 H 0.066 0.934 41 H 0.111 0.889 42 H 0.065 0.935 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.108 0.892 46 H 0.080 0.920 47 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -2.152 -19.831 9.526 22.105 hybrid contribution 2.011 -0.579 -1.359 2.495 sum -0.141 -20.409 8.167 21.983 Atomic orbital electron populations 1.21732 0.93383 1.02137 1.03607 1.22590 0.96063 0.83566 0.99948 1.88088 1.18234 1.26234 1.94895 1.21847 0.83927 0.96269 0.96714 0.89689 1.22262 1.01615 1.04076 0.95054 1.20356 0.82512 0.87233 0.79897 1.90767 1.49849 1.51019 1.46499 1.45702 1.07179 1.24776 1.59409 1.22179 0.95001 0.83979 0.95127 0.86749 1.23407 0.99969 0.90219 0.94285 1.63304 1.16047 1.27465 1.15652 1.22173 0.94979 0.98419 0.93552 1.19711 0.88943 0.85059 0.83818 1.90544 1.14692 1.63446 1.77081 1.41860 1.09830 1.48543 1.19843 1.19762 0.92887 1.29781 1.00204 0.87818 1.25259 0.96110 0.98016 0.98576 1.69619 1.09475 1.45124 1.30212 0.85807 0.80134 0.78699 0.79788 1.19143 1.20728 1.20779 1.23597 0.96904 0.91766 0.99444 1.23306 0.96713 0.93713 0.84801 0.91511 1.86580 1.35770 1.84051 1.29514 0.91634 0.91080 0.91580 0.93227 0.93324 0.91223 0.90582 0.90987 0.76819 0.87100 0.93397 0.88917 0.93497 0.77541 0.91947 0.89178 0.91954 0.77415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.83 16 2 C 0.05 0.48 6.47 37.16 0.24 0.72 16 3 O -0.36 -4.61 9.52 -55.14 -0.52 -5.14 16 4 C 0.07 0.80 3.14 -27.88 -0.09 0.71 16 5 H 0.09 0.66 7.79 -51.93 -0.40 0.25 16 6 C -0.17 -1.54 9.42 37.16 0.35 -1.19 16 7 C 0.52 7.41 7.23 -10.99 -0.08 7.33 16 8 O -0.51 -9.94 16.14 -14.37 -0.23 -10.17 16 9 N -0.72 -8.57 5.09 -51.74 -0.26 -8.83 16 10 C 0.14 2.01 3.14 -65.79 -0.21 1.81 16 11 H 0.11 1.94 7.54 -51.93 -0.39 1.55 16 12 C 0.05 0.86 4.97 -2.30 -0.01 0.85 16 13 N -0.50 -8.31 5.07 -232.68 -1.18 -9.49 16 14 C 0.04 0.70 5.07 -4.97 -0.03 0.68 16 15 C 0.44 10.34 7.34 -10.99 -0.08 10.26 16 16 O -0.57 -15.64 13.89 5.54 0.08 -15.56 16 17 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 18 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 19 H 0.10 3.06 7.16 -52.48 -0.38 2.69 16 20 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 21 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 22 Si 0.93 21.16 29.55 -169.99 -5.02 16.13 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 26 C 0.01 0.14 6.66 -2.84 -0.02 0.12 16 27 C 0.08 0.81 3.97 -24.91 -0.10 0.71 16 28 H 0.07 0.58 8.01 -51.93 -0.42 0.16 16 29 O -0.55 -5.56 13.39 -35.23 -0.47 -6.03 16 30 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.35 7.87 -51.93 -0.41 -0.06 16 34 H 0.05 0.37 8.08 -51.93 -0.42 -0.05 16 35 H 0.07 0.50 7.87 -51.93 -0.41 0.09 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.50 7.56 -51.93 -0.39 0.11 16 38 H 0.40 3.34 7.99 -40.82 -0.33 3.01 16 39 H 0.11 2.41 6.94 -51.93 -0.36 2.05 16 40 H 0.05 0.83 7.73 -51.93 -0.40 0.42 16 41 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.05 0.72 8.13 -51.93 -0.42 0.29 16 43 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 44 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 45 H 0.09 1.05 8.06 -51.92 -0.42 0.63 16 46 H 0.06 0.61 7.59 -51.93 -0.39 0.22 16 47 H 0.38 1.98 9.11 45.56 0.42 2.40 16 LS Contribution 389.52 15.07 5.87 5.87 Total: -1.00 -36.70 389.52 -7.65 -44.35 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -6.70 Total: 13.60 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: 0.12 Total: 13.22 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.78 Total: -56.27 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -1.15 Total: -36.90 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.70 -7.65 -44.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191246593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.029 kcal (2) G-P(sol) polarization free energy of solvation -36.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds