Wall clock time and date at job start Tue Mar 31 2020 04:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42902 * 109.47028 * 2 1 4 4 C 1.42902 * 113.99857 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46985 * 330.00751 * 4 3 2 6 6 C 1.53006 * 109.46696 * 89.99960 * 4 3 2 7 7 C 1.50692 * 109.47433 * 209.99951 * 4 3 2 8 8 O 1.21294 * 119.99678 * 0.02562 * 7 4 3 9 9 N 1.34769 * 120.00350 * 180.02562 * 7 4 3 10 10 C 1.46503 * 120.00413 * 180.02562 * 9 7 4 11 11 H 1.09006 * 110.90053 * 31.12789 * 10 9 7 12 12 C 1.54910 * 110.99041 * 267.26526 * 10 9 7 13 13 N 1.47839 * 104.79603 * 204.83162 * 12 10 9 14 14 C 1.46909 * 110.99521 * 146.35941 * 13 12 10 15 15 C 1.50702 * 109.46917 * 55.81247 * 14 13 12 16 16 O 1.21297 * 120.00073 * 6.12867 * 15 14 13 17 17 N 1.34774 * 119.99786 * 186.12630 * 15 14 13 18 18 C 1.37096 * 119.99631 * 180.02562 * 17 15 14 19 19 H 1.08005 * 120.00242 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99917 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99787 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00050 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47221 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46725 * 120.00211 * 22 20 18 25 25 H 1.48497 * 109.47358 * 240.00458 * 22 20 18 26 26 C 1.47440 * 108.56553 * 24.10157 * 13 12 10 27 27 C 1.54319 * 107.23617 * 359.00223 * 26 13 12 28 28 H 1.08995 * 110.70242 * 96.27677 * 27 26 13 29 29 O 1.42895 * 110.70645 * 219.34000 * 27 26 13 30 30 H 1.09007 * 109.47051 * 59.99651 * 1 2 3 31 31 H 1.08996 * 109.47241 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47321 * 300.00004 * 1 2 3 33 33 H 1.08998 * 109.46834 * 240.00196 * 2 1 3 34 34 H 1.09000 * 109.46674 * 119.99790 * 2 1 3 35 35 H 1.09000 * 109.47187 * 300.00017 * 6 4 3 36 36 H 1.09004 * 109.46651 * 60.00266 * 6 4 3 37 37 H 1.08997 * 109.46570 * 179.97438 * 6 4 3 38 38 H 0.97001 * 120.00073 * 359.97438 * 9 7 4 39 39 H 1.09006 * 110.37169 * 86.00484 * 12 10 9 40 40 H 1.09002 * 110.46411 * 323.71891 * 12 10 9 41 41 H 1.09005 * 109.46821 * 175.80825 * 14 13 12 42 42 H 1.08995 * 109.47163 * 295.81196 * 14 13 12 43 43 H 0.96997 * 120.00399 * 359.97438 * 17 15 14 44 44 H 0.96997 * 119.99850 * 179.97438 * 21 20 18 45 45 H 1.09010 * 109.88687 * 239.59797 * 26 13 12 46 46 H 1.09003 * 110.02785 * 118.49177 * 26 13 12 47 47 H 0.96707 * 114.00105 * 298.54558 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8632 0.6016 0.5146 6 6 3.9399 1.5002 -1.4418 7 6 3.8343 2.7264 0.7109 8 8 2.9854 3.4600 1.1718 9 7 5.1383 3.0439 0.8341 10 6 5.5305 4.2747 1.5252 11 1 4.8163 4.5246 2.3098 12 6 5.6882 5.4468 0.5246 13 7 6.6262 6.3811 1.1824 14 6 7.4744 7.0590 0.1928 15 6 6.6043 7.7532 -0.8231 16 8 5.4013 7.7840 -0.6714 17 7 7.1629 8.3398 -1.9003 18 6 6.3714 8.9718 -2.8242 19 1 5.3002 8.9992 -2.6891 20 6 6.9473 9.5771 -3.9345 21 7 8.2507 9.5433 -4.0991 22 14 5.8688 10.4375 -5.1938 23 1 4.4463 10.3342 -4.7804 24 1 6.2557 11.8686 -5.2815 25 1 6.0471 9.7943 -6.5203 26 6 7.4433 5.6237 2.1481 27 6 6.9672 4.1566 2.0984 28 1 7.6019 3.5678 1.4364 29 8 6.9430 3.5887 3.4094 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.6481 0.5842 -1.9556 36 1 3.5076 2.3587 -1.9559 37 1 5.0264 1.5867 -1.4413 38 1 5.8172 2.4571 0.4658 39 1 4.7270 5.9317 0.3536 40 1 6.1053 5.0903 -0.4173 41 1 8.1029 7.7941 0.6957 42 1 8.1045 6.3250 -0.3094 43 1 8.1250 8.3156 -2.0215 44 1 8.6527 9.9655 -4.8744 45 1 7.3002 6.0262 3.1510 46 1 8.4963 5.6814 1.8724 47 1 7.8071 3.5626 3.8428 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191246593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:27 Heat of formation + Delta-G solvation = -187.027328 kcal Electronic energy + Delta-G solvation = -28887.168352 eV Core-core repulsion = 24683.063115 eV Total energy + Delta-G solvation = -4204.105237 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -41.52280 -40.60127 -39.54663 -38.63649 -36.90220 -35.94632 -35.58341 -33.50979 -33.27900 -31.61698 -30.76263 -29.20626 -28.00699 -26.17476 -25.33993 -23.66220 -22.66047 -22.22711 -21.52236 -21.04448 -19.90911 -18.70492 -18.43948 -18.00167 -17.77637 -17.29540 -16.77767 -16.55335 -16.37756 -16.13660 -15.95925 -15.76285 -15.49165 -14.92579 -14.71694 -14.47199 -14.29220 -14.24191 -14.16774 -13.60374 -13.52090 -13.38890 -13.32193 -13.25158 -13.09507 -12.92577 -12.90761 -12.49627 -12.42784 -12.32242 -12.14528 -12.06671 -11.77736 -11.51652 -11.28190 -11.01766 -10.51879 -10.37008 -10.22239 -10.01739 -9.25503 -8.48874 -5.96831 1.34069 1.39878 1.45278 1.53768 1.70572 2.03143 2.27079 2.70248 2.88706 3.04008 3.18180 3.31448 3.48519 3.63084 3.75085 3.85918 3.91986 3.97825 4.17248 4.18055 4.24225 4.30236 4.32806 4.40194 4.46961 4.48139 4.55472 4.63445 4.73156 4.81357 4.86096 4.96365 4.99822 5.07369 5.16488 5.24957 5.28618 5.39748 5.78818 5.93251 6.08328 6.09829 6.45737 6.59436 6.87475 7.12087 7.14852 7.54416 8.11716 8.68660 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.010345 B = 0.003034 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.074152 B = 9226.504647 C =11322.007911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.047 3.953 3 O -0.398 6.398 4 C 0.078 3.922 5 H 0.126 0.874 6 C -0.167 4.167 7 C 0.505 3.495 8 O -0.575 6.575 9 N -0.699 5.699 10 C 0.144 3.856 11 H 0.077 0.923 12 C 0.060 3.940 13 N -0.526 5.526 14 C 0.054 3.946 15 C 0.434 3.566 16 O -0.620 6.620 17 N -0.571 5.571 18 C -0.331 4.331 19 H 0.073 0.927 20 C -0.010 4.010 21 N -0.917 5.917 22 Si 0.989 3.011 23 H -0.278 1.278 24 H -0.269 1.269 25 H -0.268 1.268 26 C 0.013 3.987 27 C 0.097 3.903 28 H 0.105 0.895 29 O -0.567 6.567 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.042 0.958 37 H 0.095 0.905 38 H 0.419 0.581 39 H 0.048 0.952 40 H 0.046 0.954 41 H 0.117 0.883 42 H 0.081 0.919 43 H 0.398 0.602 44 H 0.278 0.722 45 H 0.092 0.908 46 H 0.099 0.901 47 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.158 -23.391 9.030 25.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.029 4.029 3 O -0.317 6.317 4 C 0.017 3.983 5 H 0.143 0.857 6 C -0.225 4.225 7 C 0.292 3.708 8 O -0.452 6.452 9 N -0.353 5.353 10 C 0.038 3.962 11 H 0.095 0.905 12 C -0.069 4.069 13 N -0.253 5.253 14 C -0.077 4.077 15 C 0.221 3.779 16 O -0.506 6.506 17 N -0.209 5.209 18 C -0.461 4.461 19 H 0.091 0.909 20 C -0.210 4.210 21 N -0.558 5.558 22 Si 0.813 3.187 23 H -0.203 1.203 24 H -0.195 1.195 25 H -0.193 1.193 26 C -0.115 4.115 27 C 0.036 3.964 28 H 0.122 0.878 29 O -0.376 6.376 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.113 0.887 36 H 0.061 0.939 37 H 0.114 0.886 38 H 0.258 0.742 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.135 0.865 42 H 0.099 0.901 43 H 0.232 0.768 44 H 0.088 0.912 45 H 0.110 0.890 46 H 0.117 0.883 47 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 0.851 -22.302 9.446 24.235 hybrid contribution 1.082 0.170 -1.255 1.665 sum 1.933 -22.132 8.191 23.678 Atomic orbital electron populations 1.21787 0.93448 1.03518 1.02238 1.22854 0.96179 0.82074 1.01746 1.88058 1.19533 1.28958 1.95153 1.21987 0.83532 0.95195 0.97604 0.85675 1.22270 1.02837 1.03860 0.93532 1.21288 0.82499 0.87994 0.78999 1.90735 1.51701 1.53390 1.49411 1.45540 1.07190 1.24113 1.58453 1.21883 0.96923 0.83807 0.93628 0.90498 1.23021 0.97442 0.91115 0.95361 1.63116 1.17313 1.28858 1.15976 1.22076 0.93923 0.99294 0.92387 1.20894 0.89137 0.83830 0.84009 1.90539 1.17270 1.64688 1.78079 1.41897 1.09839 1.48983 1.20187 1.19625 0.92082 1.32196 1.02208 0.90898 1.25961 0.97443 0.97967 0.99592 1.69659 1.10235 1.45108 1.30847 0.84937 0.77826 0.78195 0.77788 1.20318 1.19459 1.19315 1.23712 0.98010 0.91806 0.97971 1.23078 0.93758 0.93686 0.85849 0.87778 1.86538 1.38140 1.83667 1.29209 0.92707 0.88271 0.93268 0.90906 0.91802 0.88722 0.93866 0.88616 0.74233 0.93352 0.93561 0.86462 0.90145 0.76817 0.91234 0.88989 0.88327 0.74539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 10.28 71.98 0.74 -1.66 16 2 C 0.05 0.76 6.47 71.98 0.47 1.23 16 3 O -0.40 -10.39 9.52 -129.94 -1.24 -11.63 16 4 C 0.08 1.60 3.14 29.85 0.09 1.69 16 5 H 0.13 1.54 7.79 -2.39 -0.02 1.52 16 6 C -0.17 -2.73 9.42 71.98 0.68 -2.06 16 7 C 0.51 14.97 7.23 87.66 0.63 15.60 16 8 O -0.57 -24.35 16.14 15.96 0.26 -24.09 16 9 N -0.70 -16.27 5.09 -435.99 -2.22 -18.48 16 10 C 0.14 4.09 3.14 46.38 0.15 4.24 16 11 H 0.08 2.79 7.54 -2.38 -0.02 2.78 16 12 C 0.06 2.15 4.97 86.78 0.43 2.58 16 13 N -0.53 -17.22 5.07 -890.05 -4.51 -21.72 16 14 C 0.05 1.80 5.07 85.56 0.43 2.24 16 15 C 0.43 20.91 7.34 87.66 0.64 21.55 16 16 O -0.62 -35.83 13.89 -3.08 -0.04 -35.87 16 17 N -0.57 -29.31 5.29 -306.97 -1.62 -30.94 16 18 C -0.33 -19.09 9.68 84.04 0.81 -18.28 16 19 H 0.07 4.57 7.16 -2.91 -0.02 4.55 16 20 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 21 N -0.92 -49.10 13.05 21.66 0.28 -48.82 16 22 Si 0.99 43.59 29.55 68.60 2.03 45.62 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 C 0.01 0.26 6.66 86.65 0.58 0.84 16 27 C 0.10 1.76 3.97 31.77 0.13 1.89 16 28 H 0.10 1.22 8.01 -2.39 -0.02 1.20 16 29 O -0.57 -9.46 13.39 -148.98 -1.99 -11.46 16 30 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.82 7.87 -2.39 -0.02 0.80 16 34 H 0.06 0.82 8.08 -2.39 -0.02 0.80 16 35 H 0.09 1.08 7.87 -2.39 -0.02 1.06 16 36 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.10 1.07 7.56 -2.39 -0.02 1.05 16 38 H 0.42 5.87 7.99 -92.71 -0.74 5.13 16 39 H 0.05 2.33 6.94 -2.38 -0.02 2.31 16 40 H 0.05 1.62 7.73 -2.39 -0.02 1.60 16 41 H 0.12 3.37 8.14 -2.38 -0.02 3.35 16 42 H 0.08 2.17 8.13 -2.39 -0.02 2.15 16 43 H 0.40 19.00 7.90 -92.71 -0.73 18.27 16 44 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 45 H 0.09 1.89 8.06 -2.38 -0.02 1.87 16 46 H 0.10 1.39 7.59 -2.39 -0.02 1.37 16 47 H 0.40 2.42 9.11 -74.05 -0.67 1.75 16 Total: -1.00 -88.32 389.52 -3.95 -92.27 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: -1.14 Total: 35.32 kcal Atomic # 6 Polarization: 23.56 SS G_CDS: 6.25 Total: 29.80 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -8.07 Total: -119.96 kcal Atomic # 8 Polarization: -80.03 SS G_CDS: -3.02 Total: -83.05 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -88.32 -3.95 -92.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191246593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.760 kcal (2) G-P(sol) polarization free energy of solvation -88.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds