Wall clock time and date at job start Tue Mar 31 2020 04:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.47062 * 2 1 4 4 C 1.42898 * 114.00014 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47165 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47385 * 179.97438 * 5 4 3 7 7 O 1.21290 * 120.00085 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00217 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99790 * 180.02562 * 8 6 5 10 10 H 1.08993 * 110.27143 * 35.63792 * 9 8 6 11 11 C 1.53994 * 110.30715 * 273.54614 * 9 8 6 12 12 N 1.47903 * 107.05424 * 242.21042 * 11 9 8 13 13 C 1.46904 * 111.00038 * 214.15460 * 12 11 9 14 14 C 1.50700 * 109.47192 * 170.00163 * 13 12 11 15 15 O 1.21293 * 119.99810 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99675 * 180.28082 * 14 13 12 17 17 C 1.37102 * 119.99634 * 179.72687 * 16 14 13 18 18 H 1.08002 * 119.99868 * 359.97438 * 17 16 14 19 19 C 1.38945 * 119.99860 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99894 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00219 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47028 * 59.99886 * 21 19 17 23 23 H 1.48497 * 109.47531 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47039 * 300.00633 * 21 19 17 25 25 C 1.48527 * 105.82321 * 334.67235 * 12 11 9 26 26 C 1.54594 * 110.39007 * 157.78064 * 9 8 6 27 27 H 1.09002 * 110.72384 * 22.55912 * 26 9 8 28 28 O 1.42902 * 110.72751 * 259.45303 * 26 9 8 29 29 H 1.09007 * 109.47133 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47527 * 299.99383 * 1 2 3 31 31 H 1.08995 * 109.47379 * 60.00320 * 1 2 3 32 32 H 1.08997 * 109.47074 * 239.99866 * 2 1 3 33 33 H 1.09004 * 109.47375 * 119.99922 * 2 1 3 34 34 H 1.09003 * 109.47410 * 59.99847 * 4 3 2 35 35 H 1.09004 * 109.47023 * 300.00050 * 4 3 2 36 36 H 1.09005 * 109.47288 * 60.00134 * 5 4 3 37 37 H 1.09001 * 109.47483 * 300.00542 * 5 4 3 38 38 H 0.96997 * 119.99656 * 0.02562 * 8 6 5 39 39 H 1.09001 * 109.91602 * 122.86106 * 11 9 8 40 40 H 1.08999 * 110.08310 * 1.65652 * 11 9 8 41 41 H 1.09009 * 109.46542 * 50.00194 * 13 12 11 42 42 H 1.08998 * 109.47050 * 290.00728 * 13 12 11 43 43 H 0.97001 * 120.00485 * 359.71840 * 16 14 13 44 44 H 0.97004 * 119.99542 * 179.97438 * 20 19 17 45 45 H 1.09003 * 110.66931 * 157.64305 * 25 12 11 46 46 H 1.09001 * 110.66633 * 280.76824 * 25 12 11 47 47 H 0.96692 * 114.00290 * 179.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8253 2.9384 -0.0012 6 6 5.3275 3.0575 -0.0012 7 8 6.0151 2.0583 -0.0012 8 7 5.9071 4.2743 -0.0011 9 6 7.3676 4.3899 -0.0017 10 1 7.8094 3.5915 -0.5977 11 6 7.9080 4.3427 1.4396 12 7 8.5768 5.6370 1.6947 13 6 9.7379 5.4645 2.5780 14 6 10.5326 6.7443 2.6188 15 8 10.1673 7.7057 1.9757 16 7 11.6519 6.8190 3.3658 17 6 12.3779 7.9815 3.3985 18 1 12.0531 8.8373 2.8253 19 6 13.5315 8.0587 4.1690 20 7 13.9270 7.0172 4.8660 21 14 14.5212 9.6423 4.2131 22 1 13.6699 10.7437 4.7303 23 1 15.6978 9.4663 5.1017 24 1 14.9827 9.9759 2.8415 25 6 8.9921 6.1476 0.3632 26 6 7.7985 5.7698 -0.5495 27 1 6.9907 6.4946 -0.4477 28 8 8.2130 5.6657 -1.9131 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8333 0.9767 -0.8908 35 1 3.8340 0.9764 0.8892 36 1 3.4229 3.4222 0.8889 37 1 3.4221 3.4217 -0.8911 38 1 5.3573 5.0733 -0.0007 39 1 8.6250 3.5279 1.5408 40 1 7.0869 4.2041 2.1428 41 1 10.3663 4.6585 2.1987 42 1 9.3963 5.2167 3.5829 43 1 11.9438 6.0503 3.8804 44 1 14.7326 7.0710 5.4036 45 1 9.1281 7.2288 0.3910 46 1 9.9039 5.6527 0.0286 47 1 8.4930 6.5044 -2.3043 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191637580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:13 Heat of formation + Delta-G solvation = -158.507844 kcal Electronic energy + Delta-G solvation = -27873.485318 eV Core-core repulsion = 23670.616778 eV Total energy + Delta-G solvation = -4202.868540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.40918 -39.20514 -38.26003 -37.77052 -35.79751 -34.54692 -33.85665 -32.87248 -31.37009 -30.87750 -29.84998 -27.99376 -26.51021 -24.48452 -23.76139 -23.14792 -21.63396 -20.85922 -20.39043 -19.30185 -18.02028 -17.78190 -17.47840 -16.79183 -16.57174 -16.22022 -16.00994 -15.49169 -15.03266 -14.89303 -14.75815 -14.57319 -14.13503 -14.00611 -13.78199 -13.75126 -13.15188 -13.09352 -12.76829 -12.67777 -12.48354 -12.33410 -12.11443 -12.07923 -11.72692 -11.58085 -11.45629 -11.41018 -11.35041 -11.01928 -10.65843 -10.45618 -10.27296 -10.25558 -9.95690 -9.93204 -9.52801 -9.32172 -8.47131 -8.09422 -7.97650 -6.46483 -3.87870 2.40014 2.68131 3.16389 3.23088 3.26787 3.50063 3.78177 3.83461 4.10865 4.33990 4.40412 4.51830 4.64246 4.69812 4.72407 4.84498 4.91289 4.98267 5.00812 5.10335 5.16003 5.20637 5.29866 5.33494 5.39637 5.44533 5.46009 5.54080 5.66743 5.71839 5.76430 5.80814 5.86096 6.07197 6.19313 6.30028 6.46504 6.81625 7.01029 7.13191 7.26231 7.50146 7.54971 7.98130 7.99846 8.55239 9.12025 9.47668 9.98527 10.70859 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.028281 B = 0.001846 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.838986 B =15166.729461 C =15755.766565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.394 6.394 4 C 0.078 3.922 5 C -0.139 4.139 6 C 0.519 3.481 7 O -0.541 6.541 8 N -0.715 5.715 9 C 0.143 3.857 10 H 0.104 0.896 11 C 0.026 3.974 12 N -0.490 5.490 13 C 0.035 3.965 14 C 0.441 3.559 15 O -0.584 6.584 16 N -0.559 5.559 17 C -0.302 4.302 18 H 0.103 0.897 19 C 0.024 3.976 20 N -0.899 5.899 21 Si 0.932 3.068 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C 0.010 3.990 26 C 0.091 3.909 27 H 0.076 0.924 28 O -0.563 6.563 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.403 0.597 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.052 0.948 42 H 0.092 0.908 43 H 0.393 0.607 44 H 0.273 0.727 45 H 0.125 0.875 46 H 0.049 0.951 47 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.905 -10.469 -9.523 25.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.314 6.314 4 C 0.001 3.999 5 C -0.179 4.179 6 C 0.306 3.694 7 O -0.418 6.418 8 N -0.367 5.367 9 C 0.038 3.962 10 H 0.122 0.878 11 C -0.103 4.103 12 N -0.216 5.216 13 C -0.096 4.096 14 C 0.227 3.773 15 O -0.469 6.469 16 N -0.194 5.194 17 C -0.432 4.432 18 H 0.121 0.879 19 C -0.178 4.178 20 N -0.540 5.540 21 Si 0.759 3.241 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.199 1.199 25 C -0.118 4.118 26 C 0.031 3.969 27 H 0.094 0.906 28 O -0.368 6.368 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.238 0.762 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.070 0.930 42 H 0.111 0.889 43 H 0.226 0.774 44 H 0.083 0.917 45 H 0.143 0.857 46 H 0.068 0.932 47 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -21.078 -10.685 -9.457 25.454 hybrid contribution 1.435 0.392 0.111 1.492 sum -19.643 -10.292 -9.346 24.065 Atomic orbital electron populations 1.21751 0.93674 1.02295 1.03146 1.22453 0.95504 0.83512 1.00334 1.87800 1.21135 1.26837 1.95598 1.22101 0.80664 0.95305 1.01823 1.21464 0.92283 0.98337 1.05839 1.20403 0.90102 0.83296 0.75637 1.90732 1.65337 1.36363 1.49386 1.45998 1.07172 1.08344 1.75214 1.21706 0.79987 0.98353 0.96188 0.87812 1.23355 0.99622 0.91961 0.95351 1.64587 1.24388 1.21516 1.11091 1.22135 0.91571 0.97189 0.98716 1.19655 0.83359 0.89434 0.84866 1.90412 1.70635 1.38810 1.47083 1.41845 1.21418 1.14859 1.41323 1.19654 1.04535 0.92102 1.26875 0.87889 1.25280 0.97546 0.98838 0.96156 1.69608 1.25084 1.29794 1.29539 0.85902 0.78723 0.81220 0.78277 1.19852 1.20940 1.19898 1.24130 0.95253 1.05044 0.87340 1.23016 0.96833 0.95306 0.81790 0.90648 1.86455 1.87765 1.37396 1.25195 0.91067 0.91808 0.91848 0.93294 0.93240 0.92416 0.92317 0.87804 0.87946 0.76171 0.92685 0.89702 0.93027 0.88949 0.77379 0.91725 0.85681 0.93239 0.76752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.28 37.16 0.38 -0.47 16 2 C 0.06 0.42 6.66 37.16 0.25 0.67 16 3 O -0.39 -3.68 10.34 -35.23 -0.36 -4.04 16 4 C 0.08 0.71 5.23 37.16 0.19 0.91 16 5 C -0.14 -1.10 6.07 -27.89 -0.17 -1.27 16 6 C 0.52 5.69 7.82 -10.99 -0.09 5.60 16 7 O -0.54 -8.00 15.68 5.55 0.09 -7.92 16 8 N -0.72 -7.22 5.03 -52.49 -0.26 -7.48 16 9 C 0.14 1.81 3.06 -66.57 -0.20 1.61 16 10 H 0.10 1.52 7.58 -51.93 -0.39 1.13 16 11 C 0.03 0.36 6.48 -2.75 -0.02 0.35 16 12 N -0.49 -7.98 5.26 -231.89 -1.22 -9.20 16 13 C 0.04 0.63 5.52 -4.97 -0.03 0.61 16 14 C 0.44 10.11 7.49 -10.98 -0.08 10.02 16 15 O -0.58 -14.82 13.10 5.55 0.07 -14.75 16 16 N -0.56 -13.90 5.29 -10.96 -0.06 -13.96 16 17 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 18 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 19 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 20 N -0.90 -24.18 13.05 55.50 0.72 -23.45 16 21 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 C 0.01 0.17 5.03 -1.90 -0.01 0.16 16 26 C 0.09 1.13 4.14 -24.87 -0.10 1.02 16 27 H 0.08 0.82 7.74 -51.93 -0.40 0.42 16 28 O -0.56 -6.77 13.41 -35.23 -0.47 -7.24 16 29 H 0.07 0.28 8.14 -51.92 -0.42 -0.14 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 35 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.40 3.02 8.35 -40.82 -0.34 2.68 16 39 H 0.05 0.77 7.57 -51.93 -0.39 0.38 16 40 H 0.08 1.12 7.93 -51.93 -0.41 0.71 16 41 H 0.05 0.86 7.81 -51.92 -0.41 0.45 16 42 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.13 2.31 5.97 -51.93 -0.31 2.00 16 46 H 0.05 0.84 8.02 -51.93 -0.42 0.43 16 47 H 0.38 3.15 9.12 45.56 0.42 3.57 16 LS Contribution 389.78 15.07 5.87 5.87 Total: -1.00 -33.28 389.78 -7.47 -40.75 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -6.71 Total: 14.41 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: -0.12 Total: 11.34 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.82 Total: -54.10 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.68 Total: -33.95 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.28 -7.47 -40.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191637580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.759 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds