Wall clock time and date at job start Tue Mar 31 2020 04:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47069 * 304.99524 * 4 3 2 6 6 C 1.52993 * 109.47345 * 65.00082 * 4 3 2 7 7 C 1.50703 * 109.46801 * 184.99801 * 4 3 2 8 8 O 1.21280 * 120.00262 * 0.02562 * 7 4 3 9 9 N 1.34776 * 119.99815 * 179.97438 * 7 4 3 10 10 C 1.46497 * 119.99939 * 180.02562 * 9 7 4 11 11 H 1.09002 * 110.63137 * 36.65038 * 10 9 7 12 12 C 1.54321 * 110.70675 * 273.54480 * 10 9 7 13 13 N 1.47441 * 107.23751 * 219.33298 * 12 10 9 14 14 C 1.46892 * 111.00082 * 236.73984 * 13 12 10 15 15 C 1.50700 * 109.47084 * 169.99775 * 14 13 12 16 16 O 1.21302 * 120.00056 * 0.02562 * 15 14 13 17 17 N 1.34782 * 120.00275 * 180.02562 * 15 14 13 18 18 C 1.37091 * 119.99825 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00699 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99729 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99883 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00261 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47243 * 89.99707 * 22 20 18 24 24 H 1.48493 * 109.47026 * 210.00208 * 22 20 18 25 25 H 1.48502 * 109.46805 * 330.00027 * 22 20 18 26 26 C 1.47843 * 108.56439 * 359.01312 * 13 12 10 27 27 C 1.54908 * 104.79902 * 24.09003 * 26 13 12 28 28 H 1.09006 * 110.98399 * 81.02642 * 27 26 13 29 29 O 1.42903 * 110.99324 * 204.83885 * 27 26 13 30 30 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 31 31 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 32 32 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 34 34 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 35 35 H 1.09004 * 109.47135 * 179.97438 * 6 4 3 36 36 H 1.09002 * 109.47179 * 299.99584 * 6 4 3 37 37 H 1.08993 * 109.47639 * 59.99724 * 6 4 3 38 38 H 0.96998 * 120.00301 * 0.02562 * 9 7 4 39 39 H 1.09005 * 109.88596 * 338.73931 * 12 10 9 40 40 H 1.09003 * 109.89042 * 99.76365 * 12 10 9 41 41 H 1.08995 * 109.47444 * 290.00224 * 14 13 12 42 42 H 1.08998 * 109.46992 * 50.00513 * 14 13 12 43 43 H 0.96995 * 119.99329 * 0.02562 * 17 15 14 44 44 H 0.97008 * 119.99901 * 179.97438 * 21 20 18 45 45 H 1.08998 * 110.37287 * 142.92352 * 26 13 12 46 46 H 1.09004 * 110.37211 * 265.15070 * 26 13 12 47 47 H 0.96700 * 113.99753 * 292.27749 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8514 0.5683 0.8410 6 6 3.9951 0.5370 -1.3082 7 6 4.1479 2.5561 0.1231 8 8 3.4348 3.5337 0.2044 9 7 5.4882 2.6960 0.1446 10 6 6.0836 4.0290 0.2655 11 1 5.4878 4.6572 0.9277 12 6 6.2337 4.6875 -1.1221 13 7 7.5237 5.4014 -1.1297 14 6 7.3367 6.8233 -1.4476 15 6 8.6261 7.5655 -1.2076 16 8 9.6048 6.9685 -0.8112 17 7 8.6918 8.8926 -1.4334 18 6 9.8650 9.5677 -1.2156 19 1 10.7366 9.0361 -0.8634 20 6 9.9326 10.9360 -1.4479 21 7 8.8719 11.5830 -1.8759 22 14 11.5313 11.8558 -1.1518 23 1 12.3404 11.8557 -2.3970 24 1 11.2312 13.2553 -0.7565 25 1 12.2932 11.1874 -0.0664 26 6 8.1623 5.2337 0.1931 27 6 7.5487 3.9320 0.7666 28 1 8.0445 3.0526 0.3556 29 8 7.6020 3.9267 2.1946 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8465 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 5.0818 0.4514 -1.3088 36 1 3.5521 -0.4549 -1.3978 37 1 3.6792 1.1533 -2.1498 38 1 6.0586 1.9141 0.0800 39 1 6.2289 3.9221 -1.8982 40 1 5.4174 5.3901 -1.2894 41 1 7.0470 6.9268 -2.4932 42 1 6.5550 7.2380 -0.8112 43 1 7.9091 9.3700 -1.7500 44 1 8.9190 12.5383 -2.0377 45 1 9.2416 5.1279 0.0828 46 1 7.9287 6.0813 0.8375 47 1 8.4976 3.8675 2.5545 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191697947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:28 Heat of formation + Delta-G solvation = -156.439514 kcal Electronic energy + Delta-G solvation = -28502.484767 eV Core-core repulsion = 24299.705917 eV Total energy + Delta-G solvation = -4202.778850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.54504 -39.34228 -38.16421 -37.71497 -35.79873 -34.62241 -34.03817 -33.70385 -31.33658 -30.09128 -28.11946 -27.67589 -26.51029 -26.05855 -24.35082 -23.27691 -21.50668 -20.88638 -20.16243 -19.27086 -17.98745 -17.77610 -17.46508 -16.75557 -16.35976 -16.13762 -15.96879 -15.33018 -15.20800 -15.06353 -14.71819 -14.60823 -14.16455 -13.90595 -13.76022 -13.65236 -13.13062 -12.98937 -12.80798 -12.77116 -12.54378 -12.37014 -12.08428 -11.90816 -11.86201 -11.67592 -11.56467 -11.32316 -11.24799 -11.02573 -10.65569 -10.41160 -10.25540 -10.19974 -10.02954 -9.89605 -9.52742 -9.36792 -8.40209 -8.02581 -7.93477 -6.44947 -3.86113 2.39019 2.69008 3.15485 3.24584 3.29845 3.55574 3.76042 3.85572 4.12139 4.28084 4.34217 4.44303 4.55284 4.66076 4.84309 4.92040 4.95176 4.98806 5.03008 5.09999 5.21892 5.26783 5.29206 5.30056 5.33813 5.35895 5.44202 5.56805 5.64512 5.77635 5.81818 5.89013 5.91237 6.11869 6.23274 6.26820 6.47583 6.75240 7.10492 7.17158 7.24374 7.51834 7.54263 7.96932 8.01574 8.56797 9.13662 9.49569 10.00229 10.72528 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.026897 B = 0.002083 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.748074 B =13435.729842 C =13959.260782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.079 3.921 4 C -0.109 4.109 5 H 0.106 0.894 6 C -0.141 4.141 7 C 0.523 3.477 8 O -0.538 6.538 9 N -0.712 5.712 10 C 0.132 3.868 11 H 0.103 0.897 12 C 0.033 3.967 13 N -0.502 5.502 14 C 0.038 3.962 15 C 0.440 3.560 16 O -0.584 6.584 17 N -0.559 5.559 18 C -0.300 4.300 19 H 0.104 0.896 20 C 0.023 3.977 21 N -0.900 5.900 22 Si 0.931 3.069 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.034 3.966 27 C 0.080 3.920 28 H 0.076 0.924 29 O -0.560 6.560 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.402 0.598 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.051 0.949 43 H 0.393 0.607 44 H 0.272 0.728 45 H 0.111 0.889 46 H 0.056 0.944 47 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.251 -21.797 2.957 25.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.003 3.997 4 C -0.130 4.130 5 H 0.124 0.876 6 C -0.198 4.198 7 C 0.309 3.691 8 O -0.415 6.415 9 N -0.364 5.364 10 C 0.027 3.973 11 H 0.120 0.880 12 C -0.096 4.096 13 N -0.228 5.228 14 C -0.093 4.093 15 C 0.226 3.774 16 O -0.470 6.470 17 N -0.195 5.195 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.540 5.540 22 Si 0.758 3.242 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.095 4.095 27 C 0.020 3.980 28 H 0.094 0.906 29 O -0.365 6.365 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.237 0.763 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.110 0.890 42 H 0.069 0.931 43 H 0.226 0.774 44 H 0.082 0.918 45 H 0.129 0.871 46 H 0.074 0.926 47 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -12.351 -21.582 2.792 25.023 hybrid contribution 0.370 1.150 0.483 1.301 sum -11.981 -20.432 3.275 23.912 Atomic orbital electron populations 1.22735 0.80623 1.02707 1.00262 1.87789 1.19974 1.27900 1.95565 1.22227 0.91450 0.84221 1.01849 1.21169 0.95407 0.94516 1.01940 0.87565 1.21740 1.01343 1.01749 0.95005 1.20393 0.82308 0.90809 0.75619 1.90730 1.60884 1.40720 1.49159 1.45848 1.06570 1.09254 1.74709 1.22162 0.93337 0.84437 0.97399 0.87951 1.23273 0.91776 0.98736 0.95850 1.63417 1.18940 1.10781 1.29636 1.22178 0.97116 0.87887 1.02165 1.19696 0.89607 0.83044 0.85074 1.90472 1.37803 1.67184 1.51494 1.41852 1.13586 1.06067 1.58036 1.19696 0.90683 0.90591 1.42035 0.87852 1.25288 0.98836 0.96767 0.97030 1.69617 1.28944 1.10004 1.45484 0.85842 0.81160 0.78356 0.78829 1.20360 1.20913 1.19428 1.23694 1.01988 0.95182 0.88586 1.23330 0.94564 0.98784 0.81323 0.90649 1.86470 1.33700 1.97143 1.19188 0.93956 0.93924 0.89549 0.92239 0.92342 0.91961 0.90557 0.92007 0.76297 0.89899 0.91544 0.88959 0.93052 0.77391 0.91793 0.87137 0.92564 0.76816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.55 10.24 -35.23 -0.36 -3.91 16 3 C 0.08 0.74 4.67 37.16 0.17 0.91 16 4 C -0.11 -0.91 2.96 -91.77 -0.27 -1.19 16 5 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 6 C -0.14 -0.95 8.99 37.15 0.33 -0.62 16 7 C 0.52 5.87 7.15 -10.98 -0.08 5.79 16 8 O -0.54 -8.16 15.64 5.56 0.09 -8.07 16 9 N -0.71 -7.16 5.02 -52.04 -0.26 -7.42 16 10 C 0.13 1.69 2.97 -66.11 -0.20 1.49 16 11 H 0.10 1.57 7.69 -51.93 -0.40 1.17 16 12 C 0.03 0.45 6.62 -2.84 -0.02 0.43 16 13 N -0.50 -8.24 5.21 -232.70 -1.21 -9.45 16 14 C 0.04 0.69 5.32 -4.98 -0.03 0.66 16 15 C 0.44 10.21 7.31 -10.98 -0.08 10.13 16 16 O -0.58 -15.00 13.13 5.54 0.07 -14.93 16 17 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 18 C -0.30 -8.28 9.68 -14.94 -0.14 -8.43 16 19 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 22 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 C 0.03 0.54 4.68 -2.30 -0.01 0.53 16 27 C 0.08 0.99 4.03 -24.59 -0.10 0.89 16 28 H 0.08 0.78 8.00 -51.93 -0.42 0.37 16 29 O -0.56 -6.78 13.47 -35.23 -0.47 -7.25 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.60 7.95 -51.93 -0.41 0.18 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.33 7.56 -51.93 -0.39 -0.06 16 36 H 0.08 0.50 7.82 -51.93 -0.41 0.10 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.40 2.94 7.94 -40.82 -0.32 2.61 16 39 H 0.08 1.03 8.03 -51.93 -0.42 0.61 16 40 H 0.07 0.93 7.50 -51.93 -0.39 0.54 16 41 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 42 H 0.05 0.88 7.96 -51.93 -0.41 0.46 16 43 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 44 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.11 2.01 6.71 -51.93 -0.35 1.66 16 46 H 0.06 1.03 7.53 -51.93 -0.39 0.64 16 47 H 0.38 3.16 9.12 45.56 0.42 3.58 16 LS Contribution 386.98 15.07 5.83 5.83 Total: -1.00 -33.61 386.98 -6.76 -40.37 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -6.69 Total: 14.37 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 0.60 Total: 12.43 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.81 Total: -54.70 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.68 Total: -34.16 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.61 -6.76 -40.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191697947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.070 kcal (2) G-P(sol) polarization free energy of solvation -33.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds