Wall clock time and date at job start Tue Mar 31 2020 04:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00363 * 2 1 4 4 C 1.52996 * 109.47430 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47501 * 54.99416 * 4 3 2 6 6 C 1.52998 * 109.47140 * 294.99820 * 4 3 2 7 7 C 1.50700 * 109.47421 * 174.99921 * 4 3 2 8 8 O 1.21285 * 119.99671 * 359.97438 * 7 4 3 9 9 N 1.34776 * 120.00418 * 180.02562 * 7 4 3 10 10 C 1.46494 * 120.00248 * 180.02562 * 9 7 4 11 11 H 1.09005 * 110.35381 * 35.68182 * 10 9 7 12 12 C 1.53997 * 110.30728 * 273.54417 * 10 9 7 13 13 N 1.47906 * 107.05871 * 242.30780 * 12 10 9 14 14 C 1.46896 * 111.00163 * 214.15425 * 13 12 10 15 15 C 1.50696 * 109.47263 * 170.00158 * 14 13 12 16 16 O 1.21288 * 119.99961 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99977 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99511 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00685 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99643 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00244 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00089 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47247 * 59.99926 * 22 20 18 24 24 H 1.48501 * 109.47404 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47255 * 300.00094 * 22 20 18 26 26 C 1.48529 * 105.81645 * 334.66750 * 13 12 10 27 27 C 1.54593 * 110.31183 * 157.82554 * 10 9 7 28 28 H 1.08997 * 110.72026 * 22.51758 * 27 10 9 29 29 O 1.42899 * 110.72614 * 259.40761 * 27 10 9 30 30 H 1.08999 * 109.47130 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47522 * 300.00140 * 1 2 3 32 32 H 1.09000 * 109.47364 * 60.00033 * 1 2 3 33 33 H 1.08998 * 109.46851 * 59.99955 * 3 2 1 34 34 H 1.09001 * 109.46933 * 299.99824 * 3 2 1 35 35 H 1.09003 * 109.47077 * 59.99922 * 6 4 3 36 36 H 1.09001 * 109.47655 * 180.02562 * 6 4 3 37 37 H 1.09001 * 109.47484 * 300.00041 * 6 4 3 38 38 H 0.97000 * 119.99262 * 359.97438 * 9 7 4 39 39 H 1.08998 * 109.91454 * 1.65789 * 12 10 9 40 40 H 1.09004 * 109.92077 * 122.95460 * 12 10 9 41 41 H 1.09002 * 109.47199 * 290.00055 * 14 13 12 42 42 H 1.09006 * 109.47203 * 49.99943 * 14 13 12 43 43 H 0.97001 * 120.00040 * 359.97438 * 17 15 14 44 44 H 0.97001 * 120.00443 * 180.02562 * 21 20 18 45 45 H 1.08995 * 110.67216 * 280.77320 * 26 13 12 46 46 H 1.09004 * 110.80922 * 157.70497 * 26 13 12 47 47 H 0.96700 * 113.99817 * 180.02562 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8508 0.5684 -0.8427 6 6 3.9962 0.5364 1.3064 7 6 4.1480 2.5559 -0.1245 8 8 3.4348 3.5336 -0.2049 9 7 5.4883 2.6958 -0.1470 10 6 6.0837 4.0289 -0.2668 11 1 5.4840 4.7619 0.2728 12 6 6.2082 4.4274 -1.7491 13 7 7.6495 4.6009 -2.0322 14 6 7.8681 5.6719 -3.0135 15 6 9.3396 5.9868 -3.0940 16 8 10.1286 5.3791 -2.4016 17 7 9.7788 6.9444 -3.9346 18 6 11.1175 7.2312 -4.0074 19 1 11.8200 6.6901 -3.3909 20 6 11.5704 8.2180 -4.8744 21 7 10.7156 8.8767 -5.6242 22 14 13.3942 8.6093 -4.9732 23 1 14.1392 7.3947 -5.3916 24 1 13.6152 9.6923 -5.9649 25 1 13.8783 9.0525 -3.6410 26 6 8.2805 4.9353 -0.7299 27 6 7.5327 4.0199 0.2719 28 1 7.9445 3.0109 0.2539 29 8 7.5843 4.5617 1.5932 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.5532 -0.4555 1.3960 36 1 5.0829 0.4507 1.3062 37 1 3.6809 1.1525 2.1485 38 1 6.0586 1.9138 -0.0831 39 1 5.7979 3.6397 -2.3810 40 1 5.6794 5.3637 -1.9277 41 1 7.5121 5.3471 -3.9912 42 1 7.3220 6.5637 -2.7058 43 1 9.1478 7.4306 -4.4881 44 1 11.0318 9.5654 -6.2298 45 1 8.1218 5.9852 -0.4838 46 1 9.3450 4.7013 -0.7439 47 1 8.4718 4.5789 1.9768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191697948.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:33 Heat of formation + Delta-G solvation = -155.489425 kcal Electronic energy + Delta-G solvation = -28429.545389 eV Core-core repulsion = 24226.807738 eV Total energy + Delta-G solvation = -4202.737651 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.53871 -39.30216 -38.16698 -37.73081 -35.79607 -34.60568 -34.04317 -33.71178 -31.35770 -30.11981 -28.09081 -27.64188 -26.52902 -26.05087 -24.37102 -23.27186 -21.58776 -20.72495 -20.18523 -19.29387 -17.99332 -17.75276 -17.53748 -16.60195 -16.39949 -16.05986 -16.00604 -15.34613 -15.32277 -14.93207 -14.76492 -14.61480 -14.19030 -13.93743 -13.78083 -13.63446 -13.13822 -13.07366 -12.93911 -12.56358 -12.50501 -12.42924 -12.12487 -11.89419 -11.75607 -11.63538 -11.57912 -11.34977 -11.23221 -11.01883 -10.65523 -10.45600 -10.26500 -10.19444 -10.01891 -9.87154 -9.52800 -9.31145 -8.47018 -8.09321 -7.97626 -6.46443 -3.87792 2.40349 2.71145 3.16351 3.23025 3.26722 3.57525 3.78134 3.83600 4.10825 4.30064 4.34527 4.49275 4.53609 4.67882 4.84489 4.93700 4.97966 4.99340 5.04290 5.10984 5.20635 5.27276 5.30612 5.33204 5.33991 5.40212 5.45502 5.58322 5.67012 5.76400 5.80212 5.84598 5.86530 6.07296 6.19424 6.30610 6.46719 6.76377 7.01091 7.13429 7.26785 7.50169 7.54961 7.98397 7.99858 8.55298 9.12057 9.47723 9.98600 10.70921 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.027868 B = 0.002048 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.492534 B =13671.827576 C =14263.950133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.080 3.920 4 C -0.110 4.110 5 H 0.108 0.892 6 C -0.140 4.140 7 C 0.523 3.477 8 O -0.540 6.540 9 N -0.713 5.713 10 C 0.143 3.857 11 H 0.104 0.896 12 C 0.026 3.974 13 N -0.490 5.490 14 C 0.035 3.965 15 C 0.441 3.559 16 O -0.584 6.584 17 N -0.559 5.559 18 C -0.302 4.302 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.900 5.900 22 Si 0.932 3.068 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C 0.010 3.990 27 C 0.091 3.909 28 H 0.075 0.925 29 O -0.562 6.562 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.403 0.597 39 H 0.085 0.915 40 H 0.055 0.945 41 H 0.092 0.908 42 H 0.052 0.948 43 H 0.393 0.607 44 H 0.273 0.727 45 H 0.049 0.951 46 H 0.125 0.875 47 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.711 -14.846 11.453 24.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.003 3.997 4 C -0.131 4.131 5 H 0.126 0.874 6 C -0.198 4.198 7 C 0.309 3.691 8 O -0.417 6.417 9 N -0.365 5.365 10 C 0.038 3.962 11 H 0.122 0.878 12 C -0.103 4.103 13 N -0.216 5.216 14 C -0.096 4.096 15 C 0.227 3.773 16 O -0.469 6.469 17 N -0.195 5.195 18 C -0.431 4.431 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.540 5.540 22 Si 0.759 3.241 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.199 1.199 26 C -0.118 4.118 27 C 0.031 3.969 28 H 0.093 0.907 29 O -0.368 6.368 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.238 0.762 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.111 0.889 42 H 0.070 0.930 43 H 0.226 0.774 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.143 0.857 47 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -15.967 -14.936 11.385 24.650 hybrid contribution 0.770 1.216 -0.243 1.460 sum -15.197 -13.720 11.142 23.309 Atomic orbital electron populations 1.22730 0.80649 1.02711 1.00226 1.87792 1.19949 1.27901 1.95556 1.22221 0.91470 0.84218 1.01796 1.21176 0.95375 0.94565 1.01982 0.87405 1.21732 1.01351 1.01690 0.95009 1.20383 0.82321 0.90799 0.75580 1.90723 1.60917 1.40680 1.49372 1.45977 1.06568 1.09353 1.74583 1.21712 0.93660 0.85103 0.95760 0.87805 1.23363 0.90475 1.01658 0.94797 1.64581 1.07541 1.41304 1.08133 1.22133 0.96787 0.93101 0.97591 1.19655 0.89058 0.83837 0.84759 1.90411 1.56673 1.53541 1.46313 1.41845 1.08925 1.32397 1.36287 1.19649 0.83285 1.18044 1.22142 0.87890 1.25285 1.00288 0.96281 0.96010 1.69601 1.34926 1.24318 1.25193 0.85903 0.82016 0.78102 0.78098 1.19851 1.20943 1.19899 1.24125 1.02655 0.97675 0.87314 1.23015 0.94134 0.97173 0.82611 0.90677 1.86457 1.34834 1.86072 1.29418 0.89546 0.94001 0.93923 0.92448 0.92192 0.90565 0.91978 0.92153 0.76204 0.89701 0.92652 0.88941 0.93031 0.77379 0.91718 0.93253 0.85696 0.76768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.59 10.24 -35.23 -0.36 -3.95 16 3 C 0.08 0.74 4.67 37.16 0.17 0.92 16 4 C -0.11 -0.94 2.96 -91.77 -0.27 -1.21 16 5 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 6 C -0.14 -0.99 8.99 37.16 0.33 -0.65 16 7 C 0.52 5.89 7.15 -10.99 -0.08 5.82 16 8 O -0.54 -8.08 15.62 5.55 0.09 -7.99 16 9 N -0.71 -7.34 4.92 -52.49 -0.26 -7.60 16 10 C 0.14 1.82 3.06 -66.58 -0.20 1.61 16 11 H 0.10 1.53 7.58 -51.93 -0.39 1.13 16 12 C 0.03 0.36 6.49 -2.75 -0.02 0.35 16 13 N -0.49 -7.99 5.26 -231.89 -1.22 -9.21 16 14 C 0.04 0.63 5.52 -4.98 -0.03 0.61 16 15 C 0.44 10.11 7.49 -10.99 -0.08 10.03 16 16 O -0.58 -14.82 13.10 5.55 0.07 -14.75 16 17 N -0.56 -13.91 5.29 -10.97 -0.06 -13.97 16 18 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 19 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 20 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 22 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 C 0.01 0.17 5.03 -1.90 -0.01 0.16 16 27 C 0.09 1.13 4.14 -24.87 -0.10 1.03 16 28 H 0.08 0.82 7.74 -51.93 -0.40 0.42 16 29 O -0.56 -6.74 13.41 -35.23 -0.47 -7.22 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.60 7.95 -51.93 -0.41 0.19 16 35 H 0.08 0.52 7.82 -51.93 -0.41 0.11 16 36 H 0.06 0.36 7.56 -51.93 -0.39 -0.04 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.40 3.17 7.76 -40.82 -0.32 2.85 16 39 H 0.08 1.13 7.92 -51.93 -0.41 0.72 16 40 H 0.06 0.78 7.57 -51.93 -0.39 0.38 16 41 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.05 0.86 7.81 -51.93 -0.41 0.45 16 43 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.05 0.84 8.02 -51.93 -0.42 0.43 16 46 H 0.13 2.30 5.97 -51.93 -0.31 1.99 16 47 H 0.38 3.14 9.12 45.56 0.42 3.55 16 LS Contribution 386.62 15.07 5.83 5.83 Total: -1.00 -33.08 386.62 -6.74 -39.82 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -6.64 Total: 14.71 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 0.59 Total: 12.12 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.81 Total: -54.26 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.67 Total: -33.91 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.08 -6.74 -39.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191697948.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.671 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds