Wall clock time and date at job start Tue Mar 31 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.34959 * 117.00128 * 2 1 4 4 O 1.21683 * 119.99579 * 0.02562 * 3 2 1 5 5 C 1.41782 * 120.00068 * 179.97438 * 3 2 1 6 6 S 1.75652 * 125.01750 * 359.97438 * 5 3 2 7 7 C 1.70561 * 91.98111 * 179.97438 * 6 5 3 8 8 N 1.37657 * 124.70925 * 180.02562 * 7 6 5 9 9 S 1.65595 * 119.99771 * 359.97438 * 8 7 6 10 10 O 1.42100 * 106.39981 * 178.53684 * 9 8 7 11 11 O 1.42103 * 106.40099 * 311.45287 * 9 8 7 12 12 C 1.76196 * 107.22365 * 64.99488 * 9 8 7 13 13 H 1.08001 * 119.99947 * 359.97438 * 12 9 8 14 14 C 1.37873 * 120.00247 * 180.02562 * 12 9 8 15 15 N 1.31519 * 119.99912 * 180.02562 * 14 12 9 16 16 Si 1.86802 * 120.00077 * 359.97438 * 14 12 9 17 17 H 1.48504 * 109.46916 * 90.00265 * 16 14 12 18 18 H 1.48500 * 109.47385 * 210.00026 * 16 14 12 19 19 H 1.48496 * 109.47293 * 330.00501 * 16 14 12 20 20 C 1.37984 * 110.58374 * 0.02562 * 7 6 5 21 21 C 1.43205 * 123.03650 * 179.97438 * 20 7 6 22 22 N 7.15085 * 144.53326 * 359.97438 * 2 1 3 23 23 C 1.36099 * 125.01333 * 180.28484 * 5 3 2 24 24 C 1.50705 * 123.23518 * 0.02562 * 23 5 3 25 25 H 1.08995 * 109.47242 * 299.99610 * 1 2 3 26 26 H 1.09009 * 109.47205 * 59.99868 * 1 2 3 27 27 H 1.09001 * 109.47087 * 179.97438 * 1 2 3 28 28 H 0.96992 * 120.00051 * 179.97438 * 8 7 6 29 29 H 0.97003 * 119.99766 * 180.02562 * 15 14 12 30 30 H 1.08998 * 109.47122 * 270.23266 * 24 23 5 31 31 H 1.09000 * 109.46563 * 30.23035 * 24 23 5 32 32 H 1.08996 * 109.47206 * 150.22819 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0417 1.2025 0.0000 4 8 1.3789 2.2230 0.0005 5 6 3.4575 1.2767 0.0005 6 16 4.5394 -0.1072 0.0019 7 6 5.9186 0.8962 0.0011 8 7 7.2182 0.4423 0.0011 9 16 7.5268 -1.1847 0.0026 10 8 8.9405 -1.3248 -0.0326 11 8 6.7153 -1.7461 1.0251 12 6 6.9246 -1.8313 -1.5218 13 1 6.4581 -1.1739 -2.2405 14 6 7.0481 -3.1767 -1.7967 15 7 6.5990 -3.6593 -2.9347 16 14 7.8544 -4.3140 -0.5532 17 1 6.8216 -4.8508 0.3691 18 1 8.5144 -5.4377 -1.2652 19 1 8.8679 -3.5576 0.2250 20 6 5.5510 2.2262 0.0004 21 6 6.5001 3.2985 0.0001 22 7 7.2530 4.1491 -0.0019 23 6 4.1790 2.4307 0.0061 24 6 3.5481 3.7993 0.0131 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 7.9530 1.0753 0.0002 29 1 6.6855 -4.6059 -3.1279 30 1 3.3919 4.1326 -1.0128 31 1 2.5898 3.7548 0.5306 32 1 4.2061 4.5001 0.5267 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192935672.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:09 Heat of formation + Delta-G solvation = -99.488826 kcal Electronic energy + Delta-G solvation = -23531.507308 eV Core-core repulsion = 19711.485821 eV Total energy + Delta-G solvation = -3820.021487 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 330.022 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.59195 -39.10703 -36.68472 -36.30007 -35.87955 -35.23758 -35.01667 -33.35453 -29.97354 -29.39374 -27.14448 -26.82333 -24.11826 -23.03528 -20.41202 -19.55621 -19.01516 -18.21913 -17.69107 -17.22872 -16.60322 -16.47665 -15.85569 -15.37547 -15.12846 -14.86527 -14.49337 -13.81863 -13.76198 -13.44024 -13.37996 -13.20314 -12.85088 -12.81008 -12.72478 -12.50156 -12.20062 -12.09196 -11.91402 -11.71891 -11.31295 -11.20887 -10.95928 -10.91867 -10.73056 -10.62557 -10.28851 -10.19953 -9.48414 -9.44865 -8.48505 -8.09539 -7.08398 -5.72187 0.37866 1.05084 1.22106 1.48604 1.76518 2.68276 2.84614 2.88322 2.92011 2.97750 3.04551 3.50431 3.54819 3.71452 4.15822 4.29316 4.56899 4.76081 4.93593 5.11672 5.18323 5.18574 5.32569 5.43188 5.54972 5.64918 5.72345 5.75069 6.08945 6.15605 6.52898 6.71802 7.16309 7.57536 7.79190 7.86816 8.36224 10.02046 Molecular weight = 330.02amu Principal moments of inertia in cm(-1) A = 0.013316 B = 0.005545 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.251187 B = 5048.358717 C = 6623.445483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.352 6.352 3 C 0.553 3.447 4 O -0.509 6.509 5 C -0.345 4.345 6 S 0.395 5.605 7 C 0.134 3.866 8 N -1.005 6.005 9 S 2.627 3.373 10 O -0.975 6.975 11 O -0.977 6.977 12 C -1.011 5.011 13 H 0.133 0.867 14 C 0.161 3.839 15 N -0.801 5.801 16 Si 0.796 3.204 17 H -0.239 1.239 18 H -0.249 1.249 19 H -0.223 1.223 20 C -0.156 4.156 21 C 0.287 3.713 22 N -0.430 5.430 23 C 0.073 3.927 24 C -0.114 4.114 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.427 0.573 29 H 0.287 0.713 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.267 5.486 4.414 11.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.269 6.269 3 C 0.401 3.599 4 O -0.401 6.401 5 C -0.463 4.463 6 S 0.659 5.341 7 C -0.096 4.096 8 N -0.743 5.743 9 S 2.731 3.269 10 O -0.965 6.965 11 O -0.966 6.966 12 C -1.147 5.147 13 H 0.151 0.849 14 C -0.062 4.062 15 N -0.429 5.429 16 Si 0.615 3.385 17 H -0.162 1.162 18 H -0.173 1.173 19 H -0.145 1.145 20 C -0.175 4.175 21 C -0.029 4.029 22 N -0.106 5.106 23 C 0.057 3.943 24 C -0.172 4.172 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.120 0.880 28 H 0.262 0.738 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.172 4.738 5.015 10.695 hybrid contribution 0.393 0.930 -0.333 1.064 sum -7.779 5.668 4.681 10.704 Atomic orbital electron populations 1.22881 0.76674 1.03736 1.02307 1.86225 1.23446 1.32491 1.84707 1.18144 0.86999 0.81721 0.73070 1.90816 1.66266 1.35243 1.47729 1.21933 0.95574 0.99044 1.29758 1.85013 0.86365 0.99065 1.63699 1.22424 0.92483 0.97981 0.96725 1.53581 1.08345 1.30243 1.82137 1.03243 0.75092 0.70295 0.78289 1.93563 1.31430 1.82184 1.89335 1.93508 1.69874 1.72983 1.60257 1.29967 1.56819 1.04395 1.23491 0.84872 1.24296 0.90599 0.96553 0.94775 1.69943 1.36088 1.15917 1.20908 0.87931 0.82886 0.84653 0.83032 1.16234 1.17273 1.14482 1.14619 0.90393 0.86866 1.25625 1.24688 0.92797 0.92621 0.92769 1.81236 1.08754 1.09409 1.11250 1.18773 0.89496 0.95908 0.90142 1.20915 1.02211 0.90255 1.03801 0.92167 0.92102 0.88001 0.73760 0.90233 0.89678 0.88040 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.45 101.05 1.06 1.42 16 2 O -0.35 -4.72 10.20 -41.20 -0.42 -5.14 16 3 C 0.55 8.02 7.72 32.09 0.25 8.27 16 4 O -0.51 -7.63 13.76 -19.41 -0.27 -7.90 16 5 C -0.34 -5.11 6.22 -39.00 -0.24 -5.35 16 6 S 0.39 6.56 19.77 -107.50 -2.13 4.43 16 7 C 0.13 2.23 6.88 -15.03 -0.10 2.13 16 8 N -1.00 -17.75 5.79 31.02 0.18 -17.57 16 9 S 2.63 57.88 3.82 -107.50 -0.41 57.47 16 10 O -0.98 -23.50 16.02 -57.17 -0.92 -24.41 16 11 O -0.98 -22.00 15.16 -57.17 -0.87 -22.87 16 12 C -1.01 -24.38 9.45 30.60 0.29 -24.09 16 13 H 0.13 3.19 8.06 -52.49 -0.42 2.77 16 14 C 0.16 4.05 5.47 -17.82 -0.10 3.96 16 15 N -0.80 -20.46 13.96 55.43 0.77 -19.69 16 16 Si 0.80 18.16 26.54 -169.99 -4.51 13.65 16 17 H -0.24 -5.25 7.11 56.52 0.40 -4.85 16 18 H -0.25 -5.26 7.11 56.52 0.40 -4.86 16 19 H -0.22 -5.21 5.61 56.52 0.32 -4.89 16 20 C -0.16 -2.35 5.71 -107.89 -0.62 -2.97 16 21 C 0.29 4.40 13.90 -22.47 -0.31 4.09 16 22 N -0.43 -7.03 18.54 41.83 0.78 -6.26 16 23 C 0.07 1.02 5.92 -105.21 -0.62 0.40 16 24 C -0.11 -1.35 9.15 36.01 0.33 -1.02 16 25 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 26 H 0.06 0.55 8.13 -51.92 -0.42 0.13 16 27 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.43 6.56 8.25 -34.46 -0.28 6.28 16 29 H 0.29 6.63 8.31 -40.82 -0.34 6.29 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.10 1.24 5.91 -51.93 -0.31 0.93 16 32 H 0.07 0.73 7.52 -51.93 -0.39 0.34 16 LS Contribution 314.83 15.07 4.74 4.74 Total: -1.00 -28.23 314.83 -5.43 -33.66 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -2.31 Total: 3.05 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -0.07 Total: -13.17 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 1.73 Total: -43.52 kcal Atomic # 8 Polarization: -57.85 SS G_CDS: -2.47 Total: -60.32 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -4.51 Total: 13.65 kcal Atomic # 16 Polarization: 64.44 SS G_CDS: -2.54 Total: 61.90 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.23 -5.43 -33.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935672.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.830 kcal (2) G-P(sol) polarization free energy of solvation -28.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds