Wall clock time and date at job start Tue Mar 31 2020 05:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00020 * 2 1 4 4 H 1.48499 * 109.46902 * 240.00121 * 3 2 1 5 5 H 1.48500 * 109.46995 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46923 * 119.99931 * 3 2 1 7 7 C 1.37874 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99754 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00228 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.39963 * 66.46265 * 9 7 2 11 11 O 1.42104 * 106.40067 * 293.54494 * 9 7 2 12 12 N 1.65600 * 107.21986 * 180.02562 * 9 7 2 13 13 C 1.47229 * 121.34513 * 89.99865 * 12 9 7 14 14 C 1.50751 * 108.36857 * 229.49350 * 13 12 9 15 15 O 1.21229 * 119.36239 * 155.60641 * 14 13 12 16 16 N 1.34077 * 121.28554 * 335.58131 * 14 13 12 17 17 C 1.46499 * 118.35446 * 182.27001 * 16 14 13 18 18 C 1.53000 * 109.46840 * 90.00453 * 17 16 14 19 19 F 1.39895 * 109.47411 * 59.99655 * 18 17 16 20 20 F 1.39898 * 109.46890 * 179.97438 * 18 17 16 21 21 F 1.39904 * 109.47059 * 299.99397 * 18 17 16 22 22 C 1.34069 * 123.28940 * 2.55158 * 16 14 13 23 23 O 1.21223 * 119.36174 * 177.42808 * 22 16 14 24 24 C 1.47226 * 121.34742 * 269.98416 * 12 9 7 25 25 H 0.97002 * 119.99763 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.68244 * 109.77509 * 13 12 9 27 27 H 1.08998 * 109.68529 * 349.21368 * 13 12 9 28 28 H 1.09002 * 109.47391 * 330.00123 * 17 16 14 29 29 H 1.09001 * 109.46813 * 210.00179 * 17 16 14 30 30 H 1.09005 * 109.67882 * 250.22787 * 24 12 9 31 31 H 1.09001 * 109.68437 * 10.74378 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 16 1.1235 -2.7200 -0.0005 10 8 0.4509 -2.7950 -1.2501 11 8 0.4518 -2.7955 1.2494 12 7 2.2482 -3.9355 -0.0005 13 6 2.7684 -4.4976 1.2569 14 6 4.2737 -4.5226 1.1792 15 8 4.9220 -4.5138 2.2035 16 7 4.9095 -4.5550 -0.0008 17 6 6.3727 -4.6290 -0.0009 18 6 6.8090 -6.0955 -0.0009 19 9 6.3098 -6.7307 -1.1430 20 9 8.2062 -6.1662 -0.0016 21 9 6.3102 -6.7304 1.1416 22 6 4.2738 -4.5175 -1.1806 23 8 4.9219 -4.5034 -2.2049 24 6 2.7682 -4.4978 -1.2579 25 1 -0.4850 0.8401 0.0004 26 1 2.3907 -5.5114 1.3898 27 1 2.4543 -3.8753 2.0949 28 1 6.7616 -4.1341 0.8889 29 1 6.7613 -4.1343 -0.8911 30 1 2.3903 -5.5117 -1.3905 31 1 2.4533 -3.8762 -2.0961 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192952093.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:50 Heat of formation + Delta-G solvation = -292.084531 kcal Electronic energy + Delta-G solvation = -27744.052323 eV Core-core repulsion = 22931.069649 eV Total energy + Delta-G solvation = -4812.982674 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.038 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.28457 -47.81743 -47.73702 -41.69651 -38.99489 -36.16508 -35.63335 -35.39800 -34.30022 -33.26464 -30.26758 -29.29509 -26.35371 -25.93708 -23.78074 -23.47068 -19.57297 -19.09834 -18.81384 -18.48537 -18.21645 -18.03316 -17.71445 -16.75254 -16.53171 -15.76453 -15.39217 -15.17520 -14.91537 -14.68692 -14.56123 -14.43799 -14.18965 -14.07540 -14.00135 -13.90785 -13.88645 -13.37862 -12.92171 -12.77891 -12.42005 -12.20559 -12.10795 -11.74157 -11.32087 -11.30503 -10.73931 -10.63150 -10.57977 -10.53381 -10.35136 -10.15770 -9.39921 -9.32565 -8.81047 -6.88724 -5.54144 1.39452 1.71544 1.99713 2.30330 2.78485 2.98964 3.04134 3.08711 3.54086 3.63334 3.82162 3.88022 3.95746 4.08638 4.46411 4.59879 4.73527 4.92888 5.01259 5.02995 5.23424 5.31867 5.49780 5.60696 5.72537 5.97844 6.65285 6.89679 7.13416 7.18917 7.51470 7.74016 8.70142 10.05522 Molecular weight = 330.04amu Principal moments of inertia in cm(-1) A = 0.019354 B = 0.004509 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.361455 B = 6208.424001 C = 6513.401055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.135 3.865 3 Si 0.921 3.079 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.263 1.263 7 C -1.020 5.020 8 H 0.101 0.899 9 S 2.707 3.293 10 O -0.988 6.988 11 O -0.988 6.988 12 N -1.015 6.015 13 C 0.113 3.887 14 C 0.520 3.480 15 O -0.486 6.486 16 N -0.563 5.563 17 C 0.045 3.955 18 C 0.442 3.558 19 F -0.175 7.175 20 F -0.177 7.177 21 F -0.175 7.175 22 C 0.520 3.480 23 O -0.486 6.486 24 C 0.113 3.887 25 H 0.295 0.705 26 H 0.115 0.885 27 H 0.144 0.856 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.115 0.885 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.180 -9.201 -0.003 13.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.084 4.084 3 Si 0.745 3.255 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.187 1.187 7 C -1.154 5.154 8 H 0.119 0.881 9 S 2.808 3.192 10 O -0.978 6.978 11 O -0.978 6.978 12 N -0.850 5.850 13 C -0.015 4.015 14 C 0.309 3.691 15 O -0.356 6.356 16 N -0.308 5.308 17 C -0.080 4.080 18 C 0.387 3.613 19 F -0.157 7.157 20 F -0.158 7.158 21 F -0.157 7.157 22 C 0.309 3.691 23 O -0.356 6.356 24 C -0.015 4.015 25 H 0.105 0.895 26 H 0.133 0.867 27 H 0.162 0.838 28 H 0.159 0.841 29 H 0.159 0.841 30 H 0.133 0.867 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.693 -9.299 -0.003 13.433 hybrid contribution 1.233 0.940 0.001 1.550 sum 10.927 -8.359 -0.002 13.757 Atomic orbital electron populations 1.69860 1.06737 1.31259 1.39177 1.24726 0.94522 1.00832 0.88294 0.86171 0.79937 0.79458 0.79945 1.18741 1.19880 1.18749 1.30416 1.05946 1.11231 1.67825 0.88051 1.01039 0.71975 0.72851 0.73302 1.93396 1.71866 1.87130 1.45401 1.93396 1.71912 1.87128 1.45369 1.59040 1.62550 1.55184 1.08237 1.21702 0.86170 1.03900 0.89744 1.21769 0.92292 0.73099 0.81945 1.90760 1.67622 1.44187 1.33022 1.46651 1.07178 1.67757 1.09187 1.22853 0.82954 0.91671 1.10483 1.20819 0.75329 0.91168 0.74021 1.93235 1.87211 1.84423 1.50826 1.93197 1.29439 1.96931 1.96269 1.93238 1.87215 1.84436 1.50792 1.21766 0.92288 0.73092 0.81941 1.90758 1.67639 1.44178 1.33016 1.21711 0.86169 1.03916 0.89746 0.89493 0.86744 0.83808 0.84087 0.84075 0.86708 0.83835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.00 13.19 55.43 0.73 -22.26 16 2 C 0.14 3.51 5.46 -17.82 -0.10 3.41 16 3 Si 0.92 19.44 29.54 -169.99 -5.02 14.42 16 4 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 7 C -1.02 -25.53 9.75 30.60 0.30 -25.23 16 8 H 0.10 2.33 7.81 -52.49 -0.41 1.92 16 9 S 2.71 62.93 5.00 -107.50 -0.54 62.39 16 10 O -0.99 -25.28 16.87 -57.17 -0.96 -26.24 16 11 O -0.99 -25.28 16.87 -57.17 -0.96 -26.24 16 12 N -1.01 -16.91 3.35 -115.77 -0.39 -17.30 16 13 C 0.11 1.58 6.50 -4.77 -0.03 1.55 16 14 C 0.52 7.39 7.16 -11.27 -0.08 7.31 16 15 O -0.49 -7.57 15.77 5.60 0.09 -7.49 16 16 N -0.56 -7.63 2.48 -115.68 -0.29 -7.91 16 17 C 0.04 0.51 5.08 -4.04 -0.02 0.49 16 18 C 0.44 5.26 3.29 37.16 0.12 5.38 16 19 F -0.18 -2.28 16.19 2.25 0.04 -2.25 16 20 F -0.18 -2.00 17.32 2.25 0.04 -1.96 16 21 F -0.18 -2.28 16.16 2.25 0.04 -2.25 16 22 C 0.52 7.40 7.16 -11.27 -0.08 7.32 16 23 O -0.49 -7.58 15.79 5.61 0.09 -7.49 16 24 C 0.11 1.58 6.50 -4.76 -0.03 1.55 16 25 H 0.29 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.14 2.11 7.31 -51.93 -0.38 1.73 16 28 H 0.14 1.45 7.23 -51.93 -0.38 1.07 16 29 H 0.14 1.45 7.22 -51.93 -0.37 1.08 16 30 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.14 2.10 7.31 -51.93 -0.38 1.72 16 LS Contribution 302.23 15.07 4.55 4.55 Total: -1.00 -32.98 302.23 -4.41 -37.39 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -1.90 Total: 0.84 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 0.08 Total: 1.79 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.06 Total: -47.48 kcal Atomic # 8 Polarization: -65.71 SS G_CDS: -1.75 Total: -67.46 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 0.11 Total: -6.45 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Atomic # 16 Polarization: 62.93 SS G_CDS: -0.54 Total: 62.39 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.98 -4.41 -37.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952093.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -254.692 kcal (2) G-P(sol) polarization free energy of solvation -32.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -287.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -292.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds