Wall clock time and date at job start Tue Mar 31 2020 06:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99818 * 2 1 4 4 H 1.48507 * 109.46652 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47242 * 299.99850 * 3 2 1 6 6 H 1.48499 * 109.47269 * 60.00052 * 3 2 1 7 7 C 1.37881 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99334 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00314 * 359.97438 * 7 2 1 10 10 O 1.42105 * 106.40403 * 293.54303 * 9 7 2 11 11 O 1.42098 * 106.40145 * 66.46232 * 9 7 2 12 12 N 1.65606 * 107.21910 * 180.02562 * 9 7 2 13 13 C 1.46923 * 120.62553 * 269.71992 * 12 9 7 14 14 C 1.53625 * 108.54012 * 126.36762 * 13 12 9 15 15 C 1.53043 * 109.24213 * 54.85673 * 14 13 12 16 16 N 1.46503 * 109.44661 * 178.49700 * 15 14 13 17 17 C 1.34773 * 119.99916 * 275.05477 * 16 15 14 18 18 O 1.21290 * 120.00250 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99952 * 180.02562 * 17 16 15 20 20 F 1.39909 * 109.47293 * 180.02562 * 19 17 16 21 21 F 1.39906 * 109.47092 * 299.99902 * 19 17 16 22 22 F 1.39891 * 109.47299 * 60.00528 * 19 17 16 23 23 C 1.53044 * 109.53628 * 298.50763 * 15 14 13 24 24 C 1.46921 * 120.63289 * 89.99915 * 12 9 7 25 25 H 0.96997 * 119.99726 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.58696 * 246.19856 * 13 12 9 27 27 H 1.09000 * 109.58966 * 6.63038 * 13 12 9 28 28 H 1.08994 * 109.63930 * 294.86214 * 14 13 12 29 29 H 1.09009 * 109.43212 * 174.72261 * 14 13 12 30 30 H 1.08997 * 109.46008 * 58.52805 * 15 14 13 31 31 H 0.97001 * 119.99909 * 95.06659 * 16 15 14 32 32 H 1.08993 * 109.49377 * 301.41584 * 23 15 14 33 33 H 1.08997 * 109.49591 * 181.31373 * 23 15 14 34 34 H 1.09003 * 109.58512 * 353.37799 * 24 12 9 35 35 H 1.09004 * 109.58693 * 113.65432 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4519 -2.7956 1.2494 11 8 0.4510 -2.7950 -1.2500 12 7 2.2484 -3.9355 -0.0005 13 6 2.7522 -4.4890 -1.2648 14 6 4.2869 -4.4205 -1.2509 15 6 4.8121 -5.1302 -0.0008 16 7 6.2768 -5.0988 -0.0013 17 6 6.9708 -6.0400 -0.6713 18 8 6.3827 -6.9128 -1.2743 19 6 8.4774 -6.0080 -0.6713 20 9 8.9666 -7.0777 -1.4290 21 9 8.9183 -4.8027 -1.2282 22 9 8.9461 -6.1139 0.6425 23 6 4.2873 -4.4202 1.2493 24 6 2.7568 -4.4849 1.2636 25 1 -0.4849 0.8400 -0.0004 26 1 2.4309 -5.5259 -1.3635 27 1 2.3665 -3.9037 -2.0995 28 1 4.6069 -3.3787 -1.2393 29 1 4.6799 -4.9124 -2.1407 30 1 4.4710 -6.1654 -0.0007 31 1 6.7471 -4.4007 0.4807 32 1 4.6074 -3.3784 1.2372 33 1 4.6806 -4.9120 2.1390 34 1 2.3741 -3.8969 2.0978 35 1 2.4337 -5.5207 1.3681 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192963010.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:52 Heat of formation + Delta-G solvation = -277.872601 kcal Electronic energy + Delta-G solvation = -27104.462386 eV Core-core repulsion = 22427.929082 eV Total energy + Delta-G solvation = -4676.533304 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.069 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.65311 -48.18500 -48.13528 -40.40754 -38.09424 -35.37788 -34.96576 -34.02955 -33.14059 -31.10136 -30.89087 -27.93060 -26.18906 -23.96157 -23.27066 -21.62769 -20.71556 -19.45560 -19.09782 -18.97407 -18.51134 -17.62738 -16.70207 -16.34780 -15.65027 -15.42548 -15.10697 -14.99853 -14.88051 -14.78841 -14.54971 -14.42281 -14.26496 -14.25077 -13.98058 -13.66462 -13.65352 -13.29543 -13.18285 -12.21830 -12.13536 -11.97602 -11.38312 -11.29118 -11.14960 -11.10464 -10.81521 -10.69818 -10.64184 -10.36438 -10.21549 -10.11816 -9.54735 -9.31507 -8.99950 -8.35212 -6.75655 -5.38243 1.46801 1.56856 2.16933 2.73541 3.00452 3.09282 3.14822 3.33482 3.74450 3.77963 3.98981 4.41869 4.58076 4.61452 4.79465 5.05873 5.21708 5.37157 5.47835 5.56987 5.68621 5.79516 5.85119 5.96669 6.01405 6.07758 6.13123 6.33685 6.37181 6.65343 6.72317 7.25519 7.26459 7.46663 7.90813 8.83243 10.18019 Molecular weight = 330.07amu Principal moments of inertia in cm(-1) A = 0.018713 B = 0.003464 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.936759 B = 8080.574099 C = 8844.552376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.920 3.080 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.019 5.019 8 H 0.102 0.898 9 S 2.713 3.287 10 O -1.003 7.003 11 O -1.002 7.002 12 N -1.014 6.014 13 C 0.131 3.869 14 C -0.146 4.146 15 C 0.145 3.855 16 N -0.693 5.693 17 C 0.483 3.517 18 O -0.478 6.478 19 C 0.449 3.551 20 F -0.155 7.155 21 F -0.167 7.167 22 F -0.169 7.169 23 C -0.143 4.143 24 C 0.132 3.868 25 H 0.291 0.709 26 H 0.062 0.938 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.410 0.590 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.863 -8.849 1.414 18.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.152 5.152 8 H 0.120 0.880 9 S 2.814 3.186 10 O -0.993 6.993 11 O -0.993 6.993 12 N -0.849 5.849 13 C 0.004 3.996 14 C -0.186 4.186 15 C 0.042 3.958 16 N -0.344 5.344 17 C 0.260 3.740 18 O -0.350 6.350 19 C 0.391 3.609 20 F -0.136 7.136 21 F -0.149 7.149 22 F -0.150 7.150 23 C -0.183 4.183 24 C 0.005 3.995 25 H 0.101 0.899 26 H 0.081 0.919 27 H 0.116 0.884 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.246 0.754 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.306 -9.572 0.977 17.241 hybrid contribution 1.711 1.610 0.201 2.358 sum 16.017 -7.962 1.178 17.926 Atomic orbital electron populations 1.69904 1.06786 1.30686 1.40079 1.24754 0.94445 1.00803 0.88516 0.86147 0.80365 0.80511 0.78613 1.18690 1.19608 1.19618 1.30622 1.06041 1.11765 1.66800 0.87994 1.00595 0.72162 0.72982 0.72815 1.93357 1.72705 1.87565 1.45709 1.93359 1.72664 1.87533 1.45718 1.58313 1.62264 1.54732 1.09575 1.21250 0.91723 0.99638 0.86988 1.22435 0.97299 1.01819 0.97091 1.21291 0.75750 1.01873 0.96839 1.46152 1.08810 1.28787 1.50646 1.20226 0.87001 0.84386 0.82381 1.90888 1.67856 1.35064 1.41163 1.20376 0.90884 0.74885 0.74757 1.93268 1.88834 1.55712 1.75796 1.93278 1.91038 1.45205 1.85351 1.93261 1.90261 1.95759 1.35752 1.22268 0.97868 1.01937 0.96178 1.21134 0.91290 0.99836 0.87269 0.89894 0.91920 0.88419 0.90316 0.90725 0.88478 0.75430 0.89986 0.90320 0.88247 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.10 13.19 55.43 0.73 -23.37 16 2 C 0.13 3.56 5.46 -17.81 -0.10 3.46 16 3 Si 0.92 19.75 29.54 -169.99 -5.02 14.73 16 4 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 7 C -1.02 -26.44 9.75 30.60 0.30 -26.14 16 8 H 0.10 2.39 7.81 -52.49 -0.41 1.98 16 9 S 2.71 68.14 4.97 -107.50 -0.53 67.61 16 10 O -1.00 -27.78 16.73 -57.17 -0.96 -28.73 16 11 O -1.00 -28.08 16.73 -57.17 -0.96 -29.03 16 12 N -1.01 -18.57 3.28 -113.27 -0.37 -18.94 16 13 C 0.13 2.05 6.41 -3.49 -0.02 2.03 16 14 C -0.15 -1.89 5.67 -26.38 -0.15 -2.04 16 15 C 0.15 1.61 2.41 -67.88 -0.16 1.45 16 16 N -0.69 -6.42 5.08 -53.76 -0.27 -6.70 16 17 C 0.48 5.19 7.32 -10.99 -0.08 5.11 16 18 O -0.48 -6.64 16.28 5.55 0.09 -6.55 16 19 C 0.45 4.26 3.43 36.00 0.12 4.38 16 20 F -0.15 -1.67 16.92 2.25 0.04 -1.63 16 21 F -0.17 -1.54 17.30 2.25 0.04 -1.51 16 22 F -0.17 -1.47 17.30 2.25 0.04 -1.43 16 23 C -0.14 -1.58 5.55 -26.61 -0.15 -1.73 16 24 C 0.13 1.93 6.37 -3.71 -0.02 1.90 16 25 H 0.29 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.10 1.67 7.12 -51.93 -0.37 1.30 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 30 H 0.10 1.12 7.58 -51.93 -0.39 0.73 16 31 H 0.41 2.80 8.60 -40.82 -0.35 2.45 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 1.57 7.12 -51.93 -0.37 1.20 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 326.41 15.07 4.92 4.92 Total: -1.00 -34.18 326.41 -6.09 -40.27 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -3.57 Total: 1.96 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -0.26 Total: -11.57 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.09 Total: -49.02 kcal Atomic # 8 Polarization: -62.50 SS G_CDS: -1.82 Total: -64.32 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.12 Total: -4.57 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: 68.14 SS G_CDS: -0.53 Total: 67.61 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.18 -6.09 -40.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963010.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -237.603 kcal (2) G-P(sol) polarization free energy of solvation -34.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -271.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -277.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds