Wall clock time and date at job start Tue Mar 31 2020 06:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86807 * 120.00061 * 2 1 4 4 H 1.48501 * 109.46766 * 269.99960 * 3 2 1 5 5 H 1.48497 * 109.46850 * 29.99369 * 3 2 1 6 6 H 1.48491 * 109.47499 * 149.99758 * 3 2 1 7 7 C 1.37882 * 120.00337 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00303 * 180.02562 * 7 2 1 9 9 S 1.76205 * 119.99629 * 0.02562 * 7 2 1 10 10 O 1.42097 * 106.39817 * 66.46052 * 9 7 2 11 11 O 1.42092 * 106.39941 * 293.53972 * 9 7 2 12 12 N 1.65593 * 107.21413 * 179.97438 * 9 7 2 13 13 C 1.40207 * 119.99878 * 64.50386 * 12 9 7 14 14 C 1.38844 * 120.10134 * 58.78790 * 13 12 9 15 15 F 1.35093 * 120.01828 * 0.02562 * 14 13 12 16 16 C 1.38425 * 119.96221 * 179.97438 * 14 13 12 17 17 C 1.38279 * 120.16921 * 0.02562 * 16 14 13 18 18 C 1.38232 * 120.20285 * 359.96954 * 17 16 14 19 19 C 1.38734 * 120.03520 * 0.28455 * 18 17 16 20 20 N 1.40027 * 120.08850 * 179.74280 * 19 18 17 21 21 C 1.47019 * 110.99459 * 63.63185 * 20 19 18 22 22 C 1.53103 * 109.25456 * 177.60969 * 21 20 19 23 23 O 1.43022 * 109.25519 * 56.85108 * 22 21 20 24 24 C 1.43021 * 113.73649 * 301.32611 * 23 22 21 25 25 C 1.47013 * 110.99973 * 300.00298 * 20 19 18 26 26 H 0.96997 * 120.00298 * 0.02562 * 1 2 3 27 27 H 0.97003 * 120.00523 * 244.49558 * 12 9 7 28 28 H 1.08001 * 119.91625 * 179.97438 * 16 14 13 29 29 H 1.08000 * 119.90270 * 180.02562 * 17 16 14 30 30 H 1.08002 * 119.98439 * 180.02562 * 18 17 16 31 31 H 1.09003 * 109.50616 * 297.54369 * 21 20 19 32 32 H 1.09000 * 109.50763 * 57.67636 * 21 20 19 33 33 H 1.08999 * 109.50370 * 296.91390 * 22 21 20 34 34 H 1.08997 * 109.50570 * 176.77858 * 22 21 20 35 35 H 1.09000 * 109.50511 * 298.73628 * 24 23 22 36 36 H 1.09003 * 109.53527 * 178.63118 * 24 23 22 37 37 H 1.09001 * 109.50063 * 302.32288 * 25 20 19 38 38 H 1.09000 * 109.50828 * 62.40790 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4519 -2.7955 -1.2494 11 8 0.4510 -2.7950 1.2500 12 7 2.2483 -3.9353 0.0005 13 6 3.1081 -4.0948 1.0965 14 6 2.5867 -4.3172 2.3640 15 9 1.2492 -4.3808 2.5430 16 6 3.4382 -4.4747 3.4439 17 6 4.8077 -4.4107 3.2642 18 6 5.3343 -4.1896 2.0053 19 6 4.4886 -4.0253 0.9179 20 7 5.0206 -3.7960 -0.3569 21 6 5.8137 -4.9474 -0.8116 22 6 6.3255 -4.6796 -2.2294 23 8 7.0808 -3.4651 -2.2367 24 6 6.3389 -2.3231 -1.7999 25 6 5.8272 -2.5671 -0.3778 26 1 -0.4850 0.8400 -0.0004 27 1 2.3124 -4.5370 -0.7576 28 1 3.0318 -4.6473 4.4296 29 1 5.4681 -4.5346 4.1097 30 1 6.4045 -4.1407 1.8689 31 1 6.6601 -5.0941 -0.1407 32 1 5.1900 -5.8414 -0.8126 33 1 5.4794 -4.5862 -2.9102 34 1 6.9612 -5.5054 -2.5489 35 1 5.4932 -2.1611 -2.4683 36 1 6.9836 -1.4443 -1.8091 37 1 5.2134 -1.7235 -0.0621 38 1 6.6735 -2.6755 0.3006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192986300.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:47 Heat of formation + Delta-G solvation = -131.817421 kcal Electronic energy + Delta-G solvation = -27806.857661 eV Core-core repulsion = 23690.887314 eV Total energy + Delta-G solvation = -4115.970347 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.12121 -40.30386 -38.43680 -35.37661 -35.18986 -34.35643 -33.94262 -33.05545 -31.21141 -29.83083 -28.67963 -26.34933 -26.12392 -24.01325 -22.53667 -21.93761 -20.22941 -19.05945 -17.93398 -17.51316 -16.97040 -16.32442 -16.15091 -15.96158 -15.75133 -15.18342 -15.01319 -14.97275 -14.66062 -14.46389 -14.25733 -13.99807 -13.76937 -13.41825 -12.89018 -12.58807 -12.12028 -11.99895 -11.94443 -11.54905 -11.43768 -11.40353 -11.24472 -11.21527 -10.71731 -10.63785 -10.53958 -10.28087 -10.09524 -9.81681 -9.60664 -9.24366 -8.81898 -8.53359 -8.44227 -7.98514 -6.69547 -5.30425 1.25528 1.35210 2.30120 3.05318 3.12109 3.17150 3.56840 3.68459 3.85028 4.03812 4.46283 4.65480 4.83845 4.85372 4.91551 5.01193 5.09855 5.12651 5.15619 5.25673 5.36578 5.48500 5.54273 5.63709 5.71620 5.76353 5.87032 5.93888 6.01881 6.23452 6.28533 6.42500 6.54776 6.71296 6.83066 6.99011 7.09606 7.30794 7.39208 7.86257 7.99020 8.89152 10.24752 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.010365 B = 0.006841 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.653553 B = 4091.820013 C = 5353.431607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.134 3.866 3 Si 0.918 3.082 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.010 5.010 8 H 0.102 0.898 9 S 2.700 3.300 10 O -1.000 7.000 11 O -0.985 6.985 12 N -1.063 6.063 13 C 0.159 3.841 14 C 0.104 3.896 15 F -0.100 7.100 16 C -0.149 4.149 17 C -0.096 4.096 18 C -0.155 4.155 19 C 0.099 3.901 20 N -0.490 5.490 21 C 0.022 3.978 22 C 0.063 3.937 23 O -0.388 6.388 24 C 0.062 3.938 25 C 0.022 3.978 26 H 0.290 0.710 27 H 0.413 0.587 28 H 0.137 0.863 29 H 0.130 0.870 30 H 0.124 0.876 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.274 -8.204 2.031 16.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.084 4.084 3 Si 0.742 3.258 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.143 5.143 8 H 0.120 0.880 9 S 2.801 3.199 10 O -0.991 6.991 11 O -0.974 6.974 12 N -0.809 5.809 13 C 0.060 3.940 14 C 0.080 3.920 15 F -0.078 7.078 16 C -0.168 4.168 17 C -0.115 4.115 18 C -0.176 4.176 19 C 0.002 3.998 20 N -0.212 5.212 21 C -0.105 4.105 22 C -0.014 4.014 23 O -0.307 6.307 24 C -0.015 4.015 25 C -0.105 4.105 26 H 0.101 0.899 27 H 0.248 0.752 28 H 0.155 0.845 29 H 0.148 0.852 30 H 0.142 0.858 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.822 -8.072 1.706 15.247 hybrid contribution 1.136 0.917 0.367 1.505 sum 13.958 -7.155 2.072 15.821 Atomic orbital electron populations 1.69892 1.06755 1.30678 1.40166 1.24718 0.94421 1.00646 0.88570 0.86207 0.80221 0.80247 0.79164 1.19140 1.19982 1.18670 1.30436 1.05940 1.11294 1.66667 0.87977 1.01097 0.72184 0.73366 0.73285 1.93382 1.72574 1.87412 1.45692 1.93450 1.72149 1.86911 1.44924 1.53881 1.52737 1.49543 1.24767 1.17166 0.88857 1.01213 0.86765 1.17911 0.79333 1.01251 0.93475 1.91713 1.27751 1.92663 1.95627 1.21092 0.93464 1.04028 0.98228 1.20754 0.94117 0.99773 0.96882 1.21452 0.99717 1.03314 0.93094 1.18611 0.91537 1.00759 0.88941 1.59630 1.35647 1.03121 1.22814 1.22875 0.96508 0.93886 0.97214 1.22670 0.96206 0.87255 0.95233 1.87950 1.38911 1.16575 1.87232 1.22721 0.96552 0.88393 0.93800 1.22905 0.96325 0.93156 0.98065 0.89911 0.75200 0.84467 0.85235 0.85831 0.93560 0.89504 0.91849 0.88526 0.91409 0.88268 0.88391 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.88 13.19 55.43 0.73 -24.15 16 2 C 0.13 3.73 5.46 -17.82 -0.10 3.63 16 3 Si 0.92 20.42 29.54 -169.99 -5.02 15.40 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 7 C -1.01 -27.61 9.67 30.60 0.30 -27.31 16 8 H 0.10 2.56 7.04 -52.49 -0.37 2.19 16 9 S 2.70 72.55 4.99 -107.50 -0.54 72.01 16 10 O -1.00 -29.62 18.02 -57.17 -1.03 -30.65 16 11 O -0.98 -28.78 14.20 -57.17 -0.81 -29.59 16 12 N -1.06 -22.09 5.36 32.59 0.17 -21.92 16 13 C 0.16 3.00 6.07 -83.38 -0.51 2.50 16 14 C 0.10 1.96 6.94 -39.29 -0.27 1.69 16 15 F -0.10 -2.21 13.76 2.25 0.03 -2.18 16 16 C -0.15 -2.17 10.02 -39.50 -0.40 -2.57 16 17 C -0.10 -1.17 10.04 -39.57 -0.40 -1.57 16 18 C -0.15 -2.01 8.63 -39.40 -0.34 -2.35 16 19 C 0.10 1.55 4.76 -83.51 -0.40 1.15 16 20 N -0.49 -7.14 4.41 -170.60 -0.75 -7.89 16 21 C 0.02 0.25 5.41 -3.71 -0.02 0.23 16 22 C 0.06 0.69 7.01 37.21 0.26 0.95 16 23 O -0.39 -4.97 10.83 -35.23 -0.38 -5.36 16 24 C 0.06 0.79 7.01 37.20 0.26 1.05 16 25 C 0.02 0.31 5.37 -3.72 -0.02 0.29 16 26 H 0.29 7.70 8.31 -40.82 -0.34 7.36 16 27 H 0.41 7.48 8.96 -34.47 -0.31 7.18 16 28 H 0.14 1.67 8.06 -52.49 -0.42 1.24 16 29 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.12 1.33 7.04 -52.49 -0.37 0.96 16 31 H 0.05 0.50 7.42 -51.93 -0.39 0.11 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.10 1.54 7.36 -51.93 -0.38 1.15 16 38 H 0.05 0.57 7.22 -51.93 -0.37 0.20 16 LS Contribution 332.16 15.07 5.01 5.01 Total: -1.00 -35.68 332.16 -8.50 -44.18 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -4.28 Total: 7.45 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -1.63 Total: -22.30 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.15 Total: -53.96 kcal Atomic # 8 Polarization: -63.38 SS G_CDS: -2.22 Total: -65.60 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.03 Total: -2.18 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 72.55 SS G_CDS: -0.54 Total: 72.01 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.68 -8.50 -44.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192986300.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.639 kcal (2) G-P(sol) polarization free energy of solvation -35.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds