Wall clock time and date at job start Tue Mar 31 2020 06:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00154 * 2 1 4 4 H 1.48498 * 109.47464 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46839 * 300.00082 * 3 2 1 6 6 H 1.48497 * 109.47390 * 60.00068 * 3 2 1 7 7 C 1.37875 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00651 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99741 * 0.02562 * 7 2 1 10 10 O 1.42095 * 106.40720 * 66.45674 * 9 7 2 11 11 O 1.42106 * 106.40253 * 293.53645 * 9 7 2 12 12 N 1.65599 * 107.21886 * 179.97438 * 9 7 2 13 13 C 1.40031 * 119.99833 * 67.54737 * 12 9 7 14 14 C 1.38729 * 120.08401 * 329.54821 * 13 12 9 15 15 C 1.38233 * 120.03475 * 180.02562 * 14 13 12 16 16 C 1.38278 * 120.20198 * 0.28221 * 15 14 13 17 17 C 1.38424 * 120.16616 * 359.48112 * 16 15 14 18 18 F 1.35104 * 120.01819 * 180.23539 * 17 16 15 19 19 C 1.38840 * 119.96204 * 0.49440 * 17 16 15 20 20 N 1.40208 * 120.09913 * 179.78460 * 19 17 16 21 21 C 1.48539 * 111.00389 * 304.56812 * 20 19 17 22 22 C 1.54934 * 103.22631 * 159.72002 * 21 20 19 23 23 C 1.54592 * 102.92542 * 322.58639 * 22 21 20 24 24 H 1.09000 * 110.39304 * 263.00345 * 23 22 21 25 25 O 1.42903 * 110.31170 * 140.87509 * 23 22 21 26 26 C 1.47902 * 110.99903 * 61.96664 * 20 19 17 27 27 H 0.97003 * 119.99539 * 359.97438 * 1 2 3 28 28 H 0.96997 * 120.00049 * 247.54816 * 12 9 7 29 29 H 1.08003 * 119.98059 * 0.02562 * 14 13 12 30 30 H 1.08003 * 119.89525 * 179.97438 * 15 14 13 31 31 H 1.08005 * 119.91470 * 179.72397 * 16 15 14 32 32 H 1.08996 * 110.66375 * 278.15577 * 21 20 19 33 33 H 1.08997 * 110.66226 * 41.28491 * 21 20 19 34 34 H 1.09006 * 110.72341 * 204.22705 * 22 21 20 35 35 H 1.08998 * 110.72312 * 80.95139 * 22 21 20 36 36 H 0.96696 * 113.99542 * 64.27991 * 25 23 22 37 37 H 1.08999 * 109.91653 * 333.50812 * 26 20 19 38 38 H 1.08999 * 109.91751 * 94.60914 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1236 -2.7199 -0.0019 10 8 0.4518 -2.7944 -1.2518 11 8 0.4510 -2.7961 1.2476 12 7 2.2483 -3.9354 -0.0030 13 6 3.0637 -4.1356 1.1176 14 6 3.4177 -3.0615 1.9210 15 6 4.2232 -3.2603 3.0267 16 6 4.6837 -4.5276 3.3330 17 6 4.3316 -5.6062 2.5400 18 9 4.7794 -6.8439 2.8448 19 6 3.5226 -5.4144 1.4281 20 7 3.1679 -6.5041 0.6202 21 6 4.3744 -7.2222 0.1352 22 6 3.8240 -8.6171 -0.2544 23 6 2.7649 -8.8885 0.8385 24 1 3.1870 -9.5057 1.6316 25 8 1.6190 -9.5267 0.2713 26 6 2.3869 -7.4996 1.3861 27 1 -0.4849 0.8401 0.0004 28 1 2.3422 -4.5085 -0.7798 29 1 3.0638 -2.0694 1.6824 30 1 4.4977 -2.4223 3.6503 31 1 5.3164 -4.6769 4.1955 32 1 4.7978 -6.7192 -0.7341 33 1 5.1155 -7.3092 0.9296 34 1 4.6144 -9.3670 -0.2203 35 1 3.3614 -8.5875 -1.2409 36 1 1.7970 -10.4058 -0.0900 37 1 2.6403 -7.4361 2.4443 38 1 1.3206 -7.3206 1.2484 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192986349.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:30 Heat of formation + Delta-G solvation = -139.761045 kcal Electronic energy + Delta-G solvation = -27128.582738 eV Core-core repulsion = 23012.267930 eV Total energy + Delta-G solvation = -4116.314808 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.02403 -40.01490 -38.37000 -35.92566 -35.35618 -34.32939 -34.10731 -33.21385 -31.62893 -29.00798 -28.66025 -27.54549 -26.33973 -23.02518 -22.23558 -21.36052 -20.84207 -19.07701 -18.15676 -17.89243 -17.41582 -16.90917 -16.70556 -15.81861 -15.66021 -15.30733 -14.97423 -14.77601 -14.69275 -14.28761 -14.09833 -13.73454 -13.61531 -13.22585 -12.84502 -12.81149 -12.23776 -12.07828 -11.99249 -11.94367 -11.53748 -11.44459 -11.30948 -11.04668 -10.87107 -10.70737 -10.65202 -10.45201 -10.32818 -10.27518 -10.13838 -9.34974 -8.92005 -8.57077 -8.48098 -7.79947 -6.81709 -5.46365 1.28707 1.50095 2.08028 2.99992 3.09067 3.15396 3.70291 3.81325 3.96253 4.08926 4.24686 4.47925 4.51843 4.55005 4.58772 4.93732 5.03891 5.17371 5.23602 5.40404 5.47899 5.52201 5.58654 5.63540 5.70586 5.78040 5.86752 5.95039 6.05509 6.22261 6.26344 6.38820 6.65020 6.67148 6.76375 6.96178 7.19374 7.38364 7.50708 7.77325 7.82373 8.75322 10.12356 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.004413 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.253030 B = 6343.472835 C = 7340.731247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.134 3.866 3 Si 0.922 3.078 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.270 1.270 7 C -1.023 5.023 8 H 0.111 0.889 9 S 2.700 3.300 10 O -0.994 6.994 11 O -0.989 6.989 12 N -1.054 6.054 13 C 0.256 3.744 14 C -0.177 4.177 15 C -0.056 4.056 16 C -0.185 4.185 17 C 0.087 3.913 18 F -0.142 7.142 19 C -0.004 4.004 20 N -0.465 5.465 21 C 0.027 3.973 22 C -0.154 4.154 23 C 0.097 3.903 24 H 0.064 0.936 25 O -0.558 6.558 26 C 0.043 3.957 27 H 0.293 0.707 28 H 0.421 0.579 29 H 0.171 0.829 30 H 0.138 0.862 31 H 0.131 0.869 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.376 0.624 37 H 0.061 0.939 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.404 -12.623 3.623 17.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.085 4.085 3 Si 0.746 3.254 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.195 1.195 7 C -1.157 5.157 8 H 0.129 0.871 9 S 2.800 3.200 10 O -0.984 6.984 11 O -0.979 6.979 12 N -0.794 5.794 13 C 0.154 3.846 14 C -0.199 4.199 15 C -0.075 4.075 16 C -0.205 4.205 17 C 0.065 3.935 18 F -0.120 7.120 19 C -0.104 4.104 20 N -0.186 5.186 21 C -0.100 4.100 22 C -0.192 4.192 23 C 0.038 3.962 24 H 0.082 0.918 25 O -0.363 6.363 26 C -0.083 4.083 27 H 0.103 0.897 28 H 0.255 0.745 29 H 0.188 0.812 30 H 0.155 0.845 31 H 0.149 0.851 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.223 0.777 37 H 0.080 0.920 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.577 -11.867 3.424 15.629 hybrid contribution 1.831 -0.143 0.186 1.846 sum 11.409 -12.010 3.610 16.954 Atomic orbital electron populations 1.69899 1.06867 1.30971 1.39040 1.24759 0.94482 1.00883 0.88367 0.86096 0.80493 0.80128 0.78732 1.18350 1.19528 1.19454 1.30585 1.06276 1.11286 1.67508 0.87074 1.01152 0.72195 0.73406 0.73227 1.93400 1.72357 1.87268 1.45422 1.93414 1.72014 1.87088 1.45349 1.54295 1.52433 1.51305 1.21336 1.17033 0.89494 0.90584 0.87487 1.22015 1.00455 1.00601 0.96788 1.20831 0.94971 0.96173 0.95526 1.20922 1.05558 0.92183 1.01871 1.18050 0.99071 0.79859 0.96530 1.91384 1.87699 1.40275 1.92672 1.18639 1.04491 0.92308 0.94989 1.62256 1.17391 1.05648 1.33329 1.23435 0.92344 0.93347 1.00828 1.23220 0.98680 0.96829 1.00508 1.22601 0.85770 0.93663 0.94187 0.91807 1.86599 1.34570 1.35068 1.80087 1.22908 1.00823 0.88608 0.95971 0.89660 0.74478 0.81180 0.84451 0.85106 0.89472 0.91901 0.90686 0.89444 0.77680 0.92042 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.67 13.19 55.43 0.73 -22.94 16 2 C 0.13 3.54 5.46 -17.82 -0.10 3.45 16 3 Si 0.92 19.40 29.54 -169.99 -5.02 14.38 16 4 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -1.02 -26.43 7.53 30.60 0.23 -26.20 16 8 H 0.11 2.58 7.02 -52.49 -0.37 2.21 16 9 S 2.70 70.50 4.60 -107.50 -0.49 70.00 16 10 O -0.99 -28.86 18.02 -57.17 -1.03 -29.89 16 11 O -0.99 -28.34 17.37 -57.17 -0.99 -29.33 16 12 N -1.05 -21.95 5.68 32.54 0.18 -21.76 16 13 C 0.26 4.91 6.26 -83.51 -0.52 4.39 16 14 C -0.18 -3.27 8.82 -39.40 -0.35 -3.62 16 15 C -0.06 -0.83 10.04 -39.57 -0.40 -1.22 16 16 C -0.18 -2.53 10.02 -39.50 -0.40 -2.93 16 17 C 0.09 1.31 6.25 -39.29 -0.25 1.06 16 18 F -0.14 -1.96 13.47 2.25 0.03 -1.93 16 19 C 0.00 -0.08 4.87 -83.38 -0.41 -0.48 16 20 N -0.46 -7.20 4.70 -166.87 -0.78 -7.99 16 21 C 0.03 0.33 6.26 -1.90 -0.01 0.32 16 22 C -0.15 -1.56 6.80 -24.87 -0.17 -1.73 16 23 C 0.10 1.11 4.35 -25.37 -0.11 1.00 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 O -0.56 -6.42 13.25 -35.23 -0.47 -6.89 16 26 C 0.04 0.63 6.05 -2.75 -0.02 0.62 16 27 H 0.29 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.42 7.92 8.53 -34.47 -0.29 7.63 16 29 H 0.17 3.43 4.56 -52.48 -0.24 3.19 16 30 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 31 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.77 5.54 -51.93 -0.29 0.48 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 36 H 0.38 2.44 9.12 45.56 0.42 2.86 16 37 H 0.06 0.89 6.23 -51.93 -0.32 0.57 16 38 H 0.10 1.60 7.97 -51.93 -0.41 1.18 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -34.45 329.75 -8.54 -43.00 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -3.18 Total: 13.76 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: -2.49 Total: -25.36 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.13 Total: -52.70 kcal Atomic # 8 Polarization: -63.63 SS G_CDS: -2.49 Total: -66.12 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.03 Total: -1.93 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Atomic # 16 Polarization: 70.50 SS G_CDS: -0.49 Total: 70.00 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.45 -8.54 -43.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192986349.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.765 kcal (2) G-P(sol) polarization free energy of solvation -34.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds