Wall clock time and date at job start Tue Mar 31 2020 06:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00181 * 2 1 4 4 H 1.48500 * 109.47279 * 270.00172 * 3 2 1 5 5 H 1.48495 * 109.47294 * 29.99919 * 3 2 1 6 6 H 1.48496 * 109.47270 * 150.00442 * 3 2 1 7 7 C 1.37872 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99995 * 359.97438 * 7 2 1 9 9 S 1.76203 * 120.00040 * 179.97438 * 7 2 1 10 10 O 1.42100 * 106.40127 * 66.45971 * 9 7 2 11 11 O 1.42096 * 106.40253 * 293.53665 * 9 7 2 12 12 N 1.65599 * 107.21881 * 179.97438 * 9 7 2 13 13 C 1.40027 * 120.00018 * 67.67438 * 12 9 7 14 14 C 1.38734 * 120.08403 * 326.99042 * 13 12 9 15 15 C 1.38229 * 120.03756 * 179.97438 * 14 13 12 16 16 C 1.38280 * 120.20573 * 359.97438 * 15 14 13 17 17 C 1.38425 * 120.16063 * 0.02562 * 16 15 14 18 18 F 1.35106 * 120.01868 * 180.02562 * 17 16 15 19 19 C 1.38846 * 119.96526 * 359.76780 * 17 16 15 20 20 N 1.40207 * 120.10073 * 180.25608 * 19 17 16 21 21 C 1.47016 * 111.00410 * 63.86477 * 20 19 17 22 22 C 1.53089 * 109.26304 * 177.60597 * 21 20 19 23 23 O 1.43015 * 109.25593 * 56.85000 * 22 21 20 24 24 C 1.43015 * 113.73994 * 301.32601 * 23 22 21 25 25 C 1.47016 * 111.00305 * 300.22941 * 20 19 17 26 26 H 0.97000 * 119.99407 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00176 * 247.95341 * 12 9 7 28 28 H 1.08002 * 119.97914 * 359.96712 * 14 13 12 29 29 H 1.08004 * 119.90044 * 179.97438 * 15 14 13 30 30 H 1.08001 * 119.92229 * 179.97438 * 16 15 14 31 31 H 1.08999 * 109.50725 * 297.54460 * 21 20 19 32 32 H 1.09002 * 109.50581 * 57.66978 * 21 20 19 33 33 H 1.09004 * 109.50938 * 296.91377 * 22 21 20 34 34 H 1.09003 * 109.54649 * 176.80506 * 22 21 20 35 35 H 1.08997 * 109.50902 * 298.73951 * 24 23 22 36 36 H 1.09003 * 109.54756 * 178.62727 * 24 23 22 37 37 H 1.09002 * 109.50375 * 302.33166 * 25 20 19 38 38 H 1.09007 * 109.50574 * 62.45840 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 16 3.7665 -1.1941 -0.0012 10 8 4.1683 -0.6499 1.2485 11 8 4.1673 -0.6495 -1.2510 12 7 4.2567 -2.7759 -0.0011 13 6 4.0234 -3.5812 -1.1225 14 6 2.8890 -3.3842 -1.8964 15 6 2.6600 -4.1794 -3.0036 16 6 3.5593 -5.1729 -3.3446 17 6 4.6940 -5.3768 -2.5784 18 9 5.5710 -6.3480 -2.9144 19 6 4.9330 -4.5792 -1.4673 20 7 6.0840 -4.7798 -0.6922 21 6 7.2993 -4.5066 -1.4731 22 6 8.5266 -4.6792 -0.5744 23 8 8.5239 -5.9978 -0.0207 24 6 7.3550 -6.2976 0.7469 25 6 6.1158 -6.1413 -0.1385 26 1 -0.4849 0.8401 0.0004 27 1 4.7017 -3.1457 0.7775 28 1 2.1844 -2.6091 -1.6336 29 1 1.7759 -4.0244 -3.6043 30 1 3.3757 -5.7919 -4.2104 31 1 7.3593 -5.2036 -2.3089 32 1 7.2665 -3.4851 -1.8520 33 1 8.4937 -3.9459 0.2314 34 1 9.4327 -4.5333 -1.1625 35 1 7.2880 -5.6114 1.5911 36 1 7.4129 -7.3222 1.1143 37 1 5.2191 -6.3131 0.4568 38 1 6.1569 -6.8646 -0.9530 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192986358.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:39 Heat of formation + Delta-G solvation = -122.191305 kcal Electronic energy + Delta-G solvation = -27390.857735 eV Core-core repulsion = 23275.304808 eV Total energy + Delta-G solvation = -4115.552927 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.98863 -40.15047 -38.67987 -35.86954 -35.50978 -34.64391 -34.43449 -33.21272 -31.29551 -30.00560 -28.82899 -26.61779 -26.31366 -24.10888 -22.71433 -22.02770 -20.57581 -19.21074 -18.22788 -17.60498 -17.20636 -17.06927 -16.37739 -16.11388 -15.48922 -15.40986 -15.30233 -15.16405 -15.10183 -15.02817 -14.12171 -14.02668 -13.73929 -13.55220 -13.27488 -13.04434 -12.63688 -12.38652 -12.09657 -11.74626 -11.59938 -11.50317 -11.43884 -11.31645 -10.97454 -10.81004 -10.71327 -10.62793 -10.47211 -9.99069 -9.81198 -9.32571 -9.13850 -8.60101 -8.53000 -7.92570 -6.94718 -5.52199 1.24557 1.40222 1.79063 2.98764 3.08881 3.17625 3.52796 3.72743 3.77654 3.84018 3.97253 4.36320 4.44589 4.78482 4.83831 4.99801 5.04628 5.07114 5.10114 5.17794 5.25228 5.39270 5.44651 5.52557 5.54061 5.64391 5.72231 5.85555 5.94037 5.99125 6.20233 6.28243 6.54544 6.62490 6.71345 6.90130 7.00589 7.25868 7.33292 7.58233 8.01228 8.53391 10.15963 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.017581 B = 0.004752 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.244143 B = 5890.902480 C = 6856.150887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.156 3.844 3 Si 0.800 3.200 4 H -0.244 1.244 5 H -0.253 1.253 6 H -0.221 1.221 7 C -1.020 5.020 8 H 0.131 0.869 9 S 2.663 3.337 10 O -0.997 6.997 11 O -0.994 6.994 12 N -1.045 6.045 13 C 0.247 3.753 14 C -0.174 4.174 15 C -0.056 4.056 16 C -0.180 4.180 17 C 0.088 3.912 18 F -0.140 7.140 19 C 0.007 3.993 20 N -0.487 5.487 21 C 0.015 3.985 22 C 0.065 3.935 23 O -0.386 6.386 24 C 0.066 3.934 25 C 0.010 3.990 26 H 0.283 0.717 27 H 0.422 0.578 28 H 0.175 0.825 29 H 0.139 0.861 30 H 0.132 0.868 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.740 -11.231 -3.156 14.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.065 4.065 3 Si 0.619 3.381 4 H -0.167 1.167 5 H -0.177 1.177 6 H -0.143 1.143 7 C -1.154 5.154 8 H 0.149 0.851 9 S 2.766 3.234 10 O -0.987 6.987 11 O -0.984 6.984 12 N -0.786 5.786 13 C 0.146 3.854 14 C -0.195 4.195 15 C -0.074 4.074 16 C -0.201 4.201 17 C 0.066 3.934 18 F -0.119 7.119 19 C -0.092 4.092 20 N -0.209 5.209 21 C -0.112 4.112 22 C -0.012 4.012 23 O -0.304 6.304 24 C -0.011 4.011 25 C -0.117 4.117 26 H 0.094 0.906 27 H 0.257 0.743 28 H 0.192 0.808 29 H 0.157 0.843 30 H 0.150 0.850 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.308 -10.110 -2.832 14.031 hybrid contribution -0.374 -0.269 -0.347 0.577 sum 8.934 -10.380 -3.178 14.059 Atomic orbital electron populations 1.69968 1.06492 1.29353 1.38362 1.24379 0.94801 0.98723 0.88548 0.87880 0.83581 0.84551 0.82056 1.16745 1.17676 1.14339 1.30442 1.14892 1.02550 1.67526 0.85141 1.01977 0.77836 0.70008 0.73621 1.93502 1.85589 1.74744 1.44902 1.93457 1.85003 1.74958 1.45015 1.53672 1.72654 1.30807 1.21502 1.17005 0.90943 0.89999 0.87462 1.22130 0.96942 1.03561 0.96870 1.20870 0.98380 0.92832 0.95356 1.20984 0.94950 1.02237 1.01906 1.18118 0.89816 0.89135 0.96346 1.91415 1.67839 1.60686 1.91964 1.18432 0.94588 1.01025 0.95135 1.59649 1.00172 1.26238 1.34836 1.22926 0.89383 1.02972 0.95923 1.22676 0.97193 0.84619 0.96690 1.87963 1.40871 1.32232 1.69364 1.22657 0.83723 1.01570 0.93193 1.22997 1.00109 0.89083 0.99545 0.90611 0.74272 0.80814 0.84293 0.85002 0.92693 0.89121 0.91960 0.88260 0.92032 0.88364 0.89380 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.89 13.96 55.43 0.77 -21.12 16 2 C 0.16 4.20 5.47 -17.82 -0.10 4.10 16 3 Si 0.80 19.54 26.54 -169.99 -4.51 15.03 16 4 H -0.24 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.25 -5.69 7.11 56.52 0.40 -5.28 16 6 H -0.22 -5.56 5.61 56.52 0.32 -5.24 16 7 C -1.02 -26.20 8.13 30.60 0.25 -25.96 16 8 H 0.13 3.31 7.13 -52.48 -0.37 2.93 16 9 S 2.66 63.61 3.85 -107.50 -0.41 63.20 16 10 O -1.00 -25.75 16.02 -57.17 -0.92 -26.67 16 11 O -0.99 -25.39 16.26 -57.17 -0.93 -26.32 16 12 N -1.04 -20.07 5.65 32.53 0.18 -19.89 16 13 C 0.25 4.48 6.21 -83.51 -0.52 3.96 16 14 C -0.17 -3.14 8.94 -39.40 -0.35 -3.49 16 15 C -0.06 -0.81 10.04 -39.57 -0.40 -1.21 16 16 C -0.18 -2.45 10.02 -39.50 -0.40 -2.85 16 17 C 0.09 1.31 6.71 -39.29 -0.26 1.05 16 18 F -0.14 -2.02 13.43 2.25 0.03 -1.99 16 19 C 0.01 0.12 4.77 -83.38 -0.40 -0.28 16 20 N -0.49 -7.05 4.16 -170.51 -0.71 -7.75 16 21 C 0.01 0.20 5.34 -3.71 -0.02 0.18 16 22 C 0.07 0.75 7.01 37.20 0.26 1.01 16 23 O -0.39 -4.84 10.83 -35.23 -0.38 -5.22 16 24 C 0.07 0.71 7.01 37.21 0.26 0.98 16 25 C 0.01 0.12 5.30 -3.71 -0.02 0.10 16 26 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.42 7.15 8.60 -34.47 -0.30 6.85 16 28 H 0.17 3.51 4.47 -52.49 -0.23 3.27 16 29 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 30 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.05 0.75 6.43 -51.93 -0.33 0.42 16 32 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.75 6.12 -51.92 -0.32 0.43 16 LS Contribution 321.48 15.07 4.84 4.84 Total: -1.00 -30.73 321.48 -7.88 -38.61 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -4.16 Total: 9.69 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -1.69 Total: -22.41 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.25 Total: -48.76 kcal Atomic # 8 Polarization: -55.98 SS G_CDS: -2.23 Total: -58.21 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.03 Total: -1.99 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.51 Total: 15.03 kcal Atomic # 16 Polarization: 63.61 SS G_CDS: -0.41 Total: 63.20 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.73 -7.88 -38.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192986358.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.582 kcal (2) G-P(sol) polarization free energy of solvation -30.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds