Wall clock time and date at job start Tue Mar 31 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00230 * 2 1 4 4 H 1.48501 * 109.46908 * 239.99733 * 3 2 1 5 5 H 1.48503 * 109.47124 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47572 * 119.99775 * 3 2 1 7 7 C 1.37883 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00385 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99581 * 0.02562 * 7 2 1 10 10 O 1.42104 * 106.40338 * 66.45833 * 9 7 2 11 11 O 1.42103 * 106.40467 * 293.53652 * 9 7 2 12 12 N 1.65601 * 107.21708 * 179.97438 * 9 7 2 13 13 C 1.46498 * 120.00461 * 64.99734 * 12 9 7 14 14 H 1.09000 * 109.35608 * 25.16718 * 13 12 9 15 15 C 1.52884 * 109.41761 * 144.99923 * 13 12 9 16 16 C 1.50714 * 109.65058 * 71.88372 * 15 13 12 17 17 C 1.38163 * 119.93186 * 212.93731 * 16 15 13 18 18 C 1.38234 * 120.07665 * 180.50102 * 17 16 15 19 19 C 1.38418 * 120.11024 * 0.06671 * 18 17 16 20 20 Cl 1.73597 * 119.97753 * 179.76334 * 19 18 17 21 21 C 1.38190 * 120.05139 * 359.74483 * 19 18 17 22 22 C 1.38755 * 120.07269 * 33.02733 * 16 15 13 23 23 N 1.39764 * 120.23425 * 358.78972 * 22 16 15 24 24 C 1.34433 * 120.67770 * 345.83213 * 23 22 16 25 25 O 1.21282 * 119.70329 * 174.15945 * 24 23 22 26 26 H 0.97006 * 119.99997 * 0.02562 * 1 2 3 27 27 H 0.97005 * 119.99748 * 244.99623 * 12 9 7 28 28 H 1.09002 * 109.43769 * 311.83831 * 15 13 12 29 29 H 1.08999 * 109.43052 * 191.92467 * 15 13 12 30 30 H 1.08008 * 119.95755 * 0.50379 * 17 16 15 31 31 H 1.08001 * 119.94594 * 180.02562 * 18 17 16 32 32 H 1.08003 * 120.03943 * 179.97438 * 21 19 18 33 33 H 0.97006 * 119.66281 * 165.80224 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 16 1.1234 -2.7199 0.0005 10 8 0.4517 -2.7955 -1.2494 11 8 0.4508 -2.7950 1.2501 12 7 2.2482 -3.9354 0.0005 13 6 3.1393 -4.1089 1.1503 14 1 2.6651 -3.6957 2.0405 15 6 3.4097 -5.5985 1.3635 16 6 4.3124 -6.1112 0.2708 17 6 4.1781 -7.4096 -0.1818 18 6 5.0112 -7.8861 -1.1766 19 6 5.9831 -7.0646 -1.7211 20 17 7.0316 -7.6685 -2.9659 21 6 6.1193 -5.7639 -1.2748 22 6 5.2788 -5.2813 -0.2792 23 7 5.4036 -3.9598 0.1585 24 6 4.4354 -3.3866 0.8941 25 8 4.6070 -2.2775 1.3540 26 1 -0.4850 0.8401 -0.0004 27 1 2.3169 -4.5326 -0.7608 28 1 2.4670 -6.1451 1.3414 29 1 3.8914 -5.7448 2.3303 30 1 3.4212 -8.0530 0.2421 31 1 4.9041 -8.9014 -1.5292 32 1 6.8779 -5.1232 -1.6995 33 1 6.1973 -3.4512 -0.0705 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193003162.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:46 Heat of formation + Delta-G solvation = -108.644726 kcal Electronic energy + Delta-G solvation = -23962.876897 eV Core-core repulsion = 20140.414674 eV Total energy + Delta-G solvation = -3822.462223 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 330.027 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.15658 -38.82842 -36.88694 -35.63834 -35.23045 -34.92059 -34.02599 -33.04142 -31.97625 -29.92985 -28.40251 -26.07747 -24.33262 -23.11050 -22.92492 -19.40824 -19.14854 -18.26499 -17.74430 -17.07879 -16.33554 -16.21362 -15.68812 -15.35899 -15.08228 -14.80959 -14.47013 -14.13301 -13.91111 -13.83875 -13.53094 -13.04937 -12.93150 -12.75766 -11.98515 -11.85247 -11.78367 -11.30800 -11.20431 -11.13208 -11.12102 -10.67816 -10.59547 -10.52618 -10.41747 -10.32810 -10.26625 -9.17420 -9.12139 -8.97617 -8.65961 -8.17278 -6.65687 -5.25610 0.81783 0.95503 1.82805 2.12159 2.63198 2.99602 3.15930 3.18393 3.27645 3.43395 4.12382 4.32090 4.39609 4.52937 4.60890 4.66390 4.71850 4.87236 5.04186 5.12121 5.37934 5.44857 5.61211 5.70717 5.72943 5.79164 5.94890 6.09288 6.27621 6.35746 6.61071 6.70891 7.07072 7.39199 7.64659 7.99881 8.14672 8.97155 10.28814 Molecular weight = 330.03amu Principal moments of inertia in cm(-1) A = 0.018565 B = 0.003936 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.811979 B = 7112.470903 C = 7522.400880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.136 3.864 3 Si 0.921 3.079 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.262 1.262 7 C -1.013 5.013 8 H 0.109 0.891 9 S 2.706 3.294 10 O -1.000 7.000 11 O -1.000 7.000 12 N -1.118 6.118 13 C 0.148 3.852 14 H 0.136 0.864 15 C -0.088 4.088 16 C -0.119 4.119 17 C -0.067 4.067 18 C -0.138 4.138 19 C -0.004 4.004 20 Cl -0.069 7.069 21 C -0.152 4.152 22 C 0.189 3.811 23 N -0.662 5.662 24 C 0.505 3.495 25 O -0.486 6.486 26 H 0.291 0.709 27 H 0.406 0.594 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.140 0.860 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.892 -15.814 -0.625 20.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.081 4.081 3 Si 0.745 3.255 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.186 1.186 7 C -1.147 5.147 8 H 0.127 0.873 9 S 2.806 3.194 10 O -0.990 6.990 11 O -0.990 6.990 12 N -0.872 5.872 13 C 0.036 3.964 14 H 0.153 0.847 15 C -0.126 4.126 16 C -0.123 4.123 17 C -0.086 4.086 18 C -0.158 4.158 19 C -0.031 4.031 20 Cl -0.040 7.040 21 C -0.173 4.173 22 C 0.091 3.909 23 N -0.307 5.307 24 C 0.290 3.710 25 O -0.355 6.355 26 H 0.101 0.899 27 H 0.237 0.763 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.158 0.842 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 11.730 -15.161 -0.186 19.170 hybrid contribution 1.635 1.125 -0.789 2.136 sum 13.365 -14.036 -0.975 19.406 Atomic orbital electron populations 1.69888 1.06755 1.30781 1.40505 1.24690 0.94369 1.00762 0.88310 0.86190 0.79825 0.79545 0.79946 1.19075 1.20277 1.18617 1.30512 1.06555 1.11132 1.66519 0.87308 1.00795 0.72131 0.73366 0.73067 1.93390 1.72775 1.87414 1.45467 1.93367 1.72539 1.87315 1.45786 1.56244 1.53491 1.51760 1.25735 1.20739 0.87665 0.95396 0.92608 0.84660 1.20908 1.00120 0.94365 0.97202 1.19616 0.98278 0.94202 1.00165 1.20835 0.98265 0.94093 0.95361 1.20950 0.95943 1.00347 0.98546 1.20570 0.94944 0.93937 0.93680 1.98377 1.65634 1.87812 1.52215 1.20571 1.02810 0.95358 0.98610 1.17426 0.95396 0.84364 0.93743 1.43695 1.22605 1.11583 1.52792 1.21529 0.85648 0.86725 0.77091 1.90846 1.79267 1.18657 1.46731 0.89913 0.76270 0.87738 0.88425 0.84177 0.84700 0.84417 0.75281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.25 13.19 55.43 0.73 -24.52 16 2 C 0.14 3.90 5.46 -17.82 -0.10 3.80 16 3 Si 0.92 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.26 -6.10 7.11 56.52 0.40 -5.69 16 7 C -1.01 -28.44 9.68 30.60 0.30 -28.14 16 8 H 0.11 2.92 5.82 -52.49 -0.31 2.62 16 9 S 2.71 70.50 5.00 -107.50 -0.54 69.97 16 10 O -1.00 -28.88 18.02 -57.17 -1.03 -29.91 16 11 O -1.00 -28.35 17.35 -57.17 -0.99 -29.34 16 12 N -1.12 -20.98 5.43 -5.99 -0.03 -21.01 16 13 C 0.15 2.39 3.04 -69.20 -0.21 2.18 16 14 H 0.14 2.33 7.49 -51.93 -0.39 1.94 16 15 C -0.09 -0.96 5.58 -27.94 -0.16 -1.12 16 16 C -0.12 -1.26 5.24 -104.45 -0.55 -1.81 16 17 C -0.07 -0.57 9.68 -39.61 -0.38 -0.95 16 18 C -0.14 -1.18 9.83 -39.52 -0.39 -1.57 16 19 C 0.00 -0.04 6.32 -39.53 -0.25 -0.29 16 20 Cl -0.07 -0.63 28.95 -51.86 -1.50 -2.13 16 21 C -0.15 -1.53 9.68 -39.34 -0.38 -1.91 16 22 C 0.19 2.15 6.53 -83.79 -0.55 1.60 16 23 N -0.66 -8.59 5.35 -10.03 -0.05 -8.64 16 24 C 0.51 8.49 6.97 -11.20 -0.08 8.41 16 25 O -0.49 -10.07 16.34 5.56 0.09 -9.98 16 26 H 0.29 7.81 8.31 -40.82 -0.34 7.47 16 27 H 0.41 6.59 8.46 -34.47 -0.29 6.30 16 28 H 0.10 0.99 8.06 -51.93 -0.42 0.57 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 31 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 33 H 0.41 4.56 8.81 -40.82 -0.36 4.20 16 LS Contribution 317.77 15.07 4.79 4.79 Total: -1.00 -36.97 317.77 -8.89 -45.86 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -2.59 Total: 8.06 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -2.74 Total: -19.80 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.64 Total: -54.17 kcal Atomic # 8 Polarization: -67.30 SS G_CDS: -1.93 Total: -69.23 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 70.50 SS G_CDS: -0.54 Total: 69.97 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -36.97 -8.89 -45.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193003162.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.780 kcal (2) G-P(sol) polarization free energy of solvation -36.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds