Wall clock time and date at job start Tue Mar 31 2020 05:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00021 * 2 1 4 4 H 1.48501 * 109.47197 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47424 * 299.99547 * 3 2 1 6 6 H 1.48507 * 109.47331 * 59.99567 * 3 2 1 7 7 C 1.37875 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00011 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99989 * 0.02562 * 7 2 1 10 10 O 1.42106 * 106.40175 * 66.46057 * 9 7 2 11 11 O 1.42098 * 106.40301 * 293.53891 * 9 7 2 12 12 N 1.65598 * 107.21747 * 180.02562 * 9 7 2 13 13 C 1.46497 * 120.00110 * 65.00149 * 12 9 7 14 14 H 1.09004 * 109.35750 * 334.82379 * 13 12 9 15 15 C 1.52893 * 109.41502 * 215.00232 * 13 12 9 16 16 C 1.50726 * 109.66039 * 288.07232 * 15 13 12 17 17 C 1.38155 * 119.92850 * 146.61907 * 16 15 13 18 18 C 1.38243 * 120.06638 * 179.35558 * 17 16 15 19 19 C 1.38422 * 120.10927 * 359.97430 * 18 17 16 20 20 Cl 1.73598 * 119.97255 * 180.26773 * 19 18 17 21 21 C 1.38203 * 120.05067 * 0.28773 * 19 18 17 22 22 C 1.38747 * 120.06083 * 326.50349 * 16 15 13 23 23 N 1.39764 * 120.22572 * 1.99002 * 22 16 15 24 24 C 1.34409 * 120.72664 * 13.66119 * 23 22 16 25 25 O 1.21284 * 119.67432 * 185.87434 * 24 23 22 26 26 H 0.97007 * 119.99625 * 0.02562 * 1 2 3 27 27 H 0.97006 * 120.00325 * 245.00232 * 12 9 7 28 28 H 1.08997 * 109.44264 * 168.01759 * 15 13 12 29 29 H 1.09003 * 109.43917 * 48.12819 * 15 13 12 30 30 H 1.08007 * 119.96993 * 359.37556 * 17 16 15 31 31 H 1.08007 * 119.94580 * 179.97438 * 18 17 16 32 32 H 1.08003 * 120.03610 * 180.02562 * 21 19 18 33 33 H 0.97008 * 119.63843 * 193.63374 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4518 -2.7955 -1.2495 11 8 0.4509 -2.7950 1.2500 12 7 2.2482 -3.9354 0.0019 13 6 3.1383 -4.1083 1.1526 14 1 3.2456 -3.1564 1.6727 15 6 4.5096 -4.5799 0.6679 16 6 4.4198 -6.0124 0.2079 17 6 5.2073 -6.4508 -0.8392 18 6 5.1370 -7.7674 -1.2547 19 6 4.2781 -8.6500 -0.6228 20 17 4.1977 -10.3043 -1.1430 21 6 3.4842 -8.2152 0.4215 22 6 3.5491 -6.8910 0.8365 23 7 2.7221 -6.4429 1.8702 24 6 2.5503 -5.1283 2.0914 25 8 1.9157 -4.7598 3.0571 26 1 -0.4850 0.8401 -0.0004 27 1 2.3177 -4.5329 -0.7591 28 1 5.2282 -4.5054 1.4841 29 1 4.8368 -3.9525 -0.1612 30 1 5.8789 -5.7643 -1.3334 31 1 5.7533 -8.1079 -2.0738 32 1 2.8145 -8.9042 0.9146 33 1 2.2668 -7.0877 2.4340 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193003163.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:51 Heat of formation + Delta-G solvation = -108.431147 kcal Electronic energy + Delta-G solvation = -23798.590525 eV Core-core repulsion = 19976.137564 eV Total energy + Delta-G solvation = -3822.452961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 330.027 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.14401 -38.81027 -36.88461 -35.59619 -35.21105 -34.91380 -33.97980 -33.13188 -31.95985 -29.92468 -28.38737 -26.18502 -24.32462 -23.10584 -22.92287 -19.43184 -19.18826 -18.24996 -17.80656 -16.92358 -16.32194 -16.26757 -15.69905 -15.36896 -15.08161 -14.79412 -14.45555 -14.17610 -13.88191 -13.83508 -13.54202 -13.00546 -12.92719 -12.73590 -12.06372 -11.80498 -11.77378 -11.30737 -11.28502 -11.25043 -11.20166 -10.68453 -10.61104 -10.56414 -10.35928 -10.25310 -10.18157 -9.28832 -9.14319 -8.97905 -8.65809 -8.17836 -6.73574 -5.36832 0.82172 0.95751 1.82514 2.12003 2.66627 2.99456 3.04201 3.12657 3.18222 3.43990 4.02531 4.33557 4.40459 4.52949 4.59822 4.64329 4.69051 4.87326 5.04263 5.12668 5.40153 5.45778 5.58975 5.70428 5.73584 5.82803 5.95097 6.11306 6.26696 6.37288 6.63955 6.71528 7.07341 7.27579 7.66023 7.90407 8.08170 8.84934 10.21017 Molecular weight = 330.03amu Principal moments of inertia in cm(-1) A = 0.021776 B = 0.003557 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.522724 B = 7869.049319 C = 8102.939361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.132 3.868 3 Si 0.922 3.078 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.020 5.020 8 H 0.104 0.896 9 S 2.702 3.298 10 O -1.002 7.002 11 O -0.987 6.987 12 N -1.119 6.119 13 C 0.152 3.848 14 H 0.133 0.867 15 C -0.090 4.090 16 C -0.118 4.118 17 C -0.066 4.066 18 C -0.138 4.138 19 C -0.005 4.005 20 Cl -0.070 7.070 21 C -0.153 4.153 22 C 0.187 3.813 23 N -0.664 5.664 24 C 0.505 3.495 25 O -0.483 6.483 26 H 0.291 0.709 27 H 0.405 0.595 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.141 0.859 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.734 -14.768 -1.205 20.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.086 4.086 3 Si 0.746 3.254 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.153 5.153 8 H 0.123 0.877 9 S 2.802 3.198 10 O -0.992 6.992 11 O -0.977 6.977 12 N -0.873 5.873 13 C 0.040 3.960 14 H 0.151 0.849 15 C -0.128 4.128 16 C -0.121 4.121 17 C -0.085 4.085 18 C -0.158 4.158 19 C -0.032 4.032 20 Cl -0.041 7.041 21 C -0.175 4.175 22 C 0.089 3.911 23 N -0.309 5.309 24 C 0.289 3.711 25 O -0.352 6.352 26 H 0.101 0.899 27 H 0.237 0.763 28 H 0.115 0.885 29 H 0.125 0.875 30 H 0.159 0.841 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 12.236 -14.415 -0.554 18.916 hybrid contribution 0.694 0.287 -0.222 0.783 sum 12.930 -14.129 -0.776 19.167 Atomic orbital electron populations 1.69909 1.06835 1.30739 1.39721 1.24755 0.94479 1.00883 0.88470 0.86108 0.80373 0.80332 0.78596 1.18533 1.19623 1.19571 1.30508 1.06067 1.11531 1.67236 0.87748 1.00980 0.72285 0.73407 0.73175 1.93389 1.72601 1.87490 1.45731 1.93446 1.72065 1.87022 1.45174 1.56306 1.55353 1.51173 1.24421 1.20703 0.89542 0.98659 0.87125 0.84949 1.20951 0.96509 0.92014 1.03347 1.19617 0.98018 0.95981 0.98533 1.20850 0.97709 0.95047 0.94855 1.20961 1.00222 0.93006 1.01582 1.20574 0.99300 0.86065 0.97236 1.98377 1.97690 1.17995 1.90006 1.20563 1.02805 0.94897 0.99196 1.17435 0.91548 0.92449 0.89626 1.43716 1.46470 1.08557 1.32152 1.21526 0.80335 0.82833 0.86403 1.90846 1.37109 1.78946 1.28312 0.89853 0.76344 0.88475 0.87519 0.84110 0.84688 0.84456 0.75378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.58 13.19 55.43 0.73 -23.85 16 2 C 0.13 3.62 5.46 -17.82 -0.10 3.52 16 3 Si 0.92 20.01 29.54 -169.99 -5.02 14.99 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -1.02 -26.96 9.57 30.60 0.29 -26.67 16 8 H 0.10 2.43 7.81 -52.49 -0.41 2.02 16 9 S 2.70 70.21 4.93 -107.50 -0.53 69.68 16 10 O -1.00 -28.94 18.02 -57.17 -1.03 -29.97 16 11 O -0.99 -29.11 17.78 -57.17 -1.02 -30.13 16 12 N -1.12 -21.01 5.43 -5.98 -0.03 -21.04 16 13 C 0.15 2.46 2.91 -69.20 -0.20 2.26 16 14 H 0.13 2.24 7.84 -51.93 -0.41 1.83 16 15 C -0.09 -0.99 5.58 -27.93 -0.16 -1.15 16 16 C -0.12 -1.26 5.24 -104.45 -0.55 -1.81 16 17 C -0.07 -0.57 9.68 -39.61 -0.38 -0.95 16 18 C -0.14 -1.19 9.83 -39.51 -0.39 -1.57 16 19 C 0.00 -0.04 6.32 -39.53 -0.25 -0.29 16 20 Cl -0.07 -0.63 28.95 -51.86 -1.50 -2.13 16 21 C -0.15 -1.53 9.68 -39.34 -0.38 -1.91 16 22 C 0.19 2.14 6.54 -83.80 -0.55 1.59 16 23 N -0.66 -8.67 5.35 -10.04 -0.05 -8.72 16 24 C 0.50 8.66 7.29 -11.21 -0.08 8.57 16 25 O -0.48 -10.38 17.92 5.55 0.10 -10.28 16 26 H 0.29 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.41 6.61 8.46 -34.47 -0.29 6.31 16 28 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.11 1.02 8.06 -51.93 -0.42 0.60 16 30 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 31 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 32 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 33 H 0.41 4.54 8.81 -40.82 -0.36 4.18 16 LS Contribution 322.12 15.07 4.85 4.85 Total: -1.00 -37.27 322.12 -8.95 -46.23 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -2.71 Total: 8.77 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -2.74 Total: -18.40 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.64 Total: -53.61 kcal Atomic # 8 Polarization: -68.43 SS G_CDS: -1.95 Total: -70.38 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 70.21 SS G_CDS: -0.53 Total: 69.68 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -37.27 -8.95 -46.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193003163.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.206 kcal (2) G-P(sol) polarization free energy of solvation -37.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds