Wall clock time and date at job start Tue Mar 31 2020 05:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00021 * 2 1 4 4 H 1.48501 * 109.47197 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47424 * 299.99547 * 3 2 1 6 6 H 1.48507 * 109.47331 * 59.99567 * 3 2 1 7 7 C 1.37875 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00011 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99989 * 0.02562 * 7 2 1 10 10 O 1.42106 * 106.40175 * 66.46057 * 9 7 2 11 11 O 1.42098 * 106.40301 * 293.53891 * 9 7 2 12 12 N 1.65598 * 107.21747 * 180.02562 * 9 7 2 13 13 C 1.46497 * 120.00110 * 65.00149 * 12 9 7 14 14 H 1.09004 * 109.35750 * 334.82379 * 13 12 9 15 15 C 1.52893 * 109.41502 * 215.00232 * 13 12 9 16 16 C 1.50726 * 109.66039 * 288.07232 * 15 13 12 17 17 C 1.38155 * 119.92850 * 146.61907 * 16 15 13 18 18 C 1.38243 * 120.06638 * 179.35558 * 17 16 15 19 19 C 1.38422 * 120.10927 * 359.97430 * 18 17 16 20 20 Cl 1.73598 * 119.97255 * 180.26773 * 19 18 17 21 21 C 1.38203 * 120.05067 * 0.28773 * 19 18 17 22 22 C 1.38747 * 120.06083 * 326.50349 * 16 15 13 23 23 N 1.39764 * 120.22572 * 1.99002 * 22 16 15 24 24 C 1.34409 * 120.72664 * 13.66119 * 23 22 16 25 25 O 1.21284 * 119.67432 * 185.87434 * 24 23 22 26 26 H 0.97007 * 119.99625 * 0.02562 * 1 2 3 27 27 H 0.97006 * 120.00325 * 245.00232 * 12 9 7 28 28 H 1.08997 * 109.44264 * 168.01759 * 15 13 12 29 29 H 1.09003 * 109.43917 * 48.12819 * 15 13 12 30 30 H 1.08007 * 119.96993 * 359.37556 * 17 16 15 31 31 H 1.08007 * 119.94580 * 179.97438 * 18 17 16 32 32 H 1.08003 * 120.03610 * 180.02562 * 21 19 18 33 33 H 0.97008 * 119.63843 * 193.63374 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4518 -2.7955 -1.2495 11 8 0.4509 -2.7950 1.2500 12 7 2.2482 -3.9354 0.0019 13 6 3.1383 -4.1083 1.1526 14 1 3.2456 -3.1564 1.6727 15 6 4.5096 -4.5799 0.6679 16 6 4.4198 -6.0124 0.2079 17 6 5.2073 -6.4508 -0.8392 18 6 5.1370 -7.7674 -1.2547 19 6 4.2781 -8.6500 -0.6228 20 17 4.1977 -10.3043 -1.1430 21 6 3.4842 -8.2152 0.4215 22 6 3.5491 -6.8910 0.8365 23 7 2.7221 -6.4429 1.8702 24 6 2.5503 -5.1283 2.0914 25 8 1.9157 -4.7598 3.0571 26 1 -0.4850 0.8401 -0.0004 27 1 2.3177 -4.5329 -0.7591 28 1 5.2282 -4.5054 1.4841 29 1 4.8368 -3.9525 -0.1612 30 1 5.8789 -5.7643 -1.3334 31 1 5.7533 -8.1079 -2.0738 32 1 2.8145 -8.9042 0.9146 33 1 2.2668 -7.0877 2.4340 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193003163.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:50 Heat of formation + Delta-G solvation = -139.248198 kcal Electronic energy + Delta-G solvation = -23799.926852 eV Core-core repulsion = 19976.137564 eV Total energy + Delta-G solvation = -3823.789289 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 330.027 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.19890 -39.86237 -37.72176 -37.43143 -36.73984 -36.15554 -35.99204 -35.16820 -33.01682 -30.78438 -29.50046 -28.26170 -25.40767 -24.01646 -23.79174 -21.17644 -20.49721 -19.57910 -19.18554 -18.32264 -18.12333 -17.55894 -17.02838 -16.57586 -16.32878 -15.99906 -15.82378 -15.73104 -15.31618 -15.00026 -14.67481 -14.10555 -14.00152 -13.97010 -13.62410 -13.29384 -13.00558 -12.84192 -12.60387 -12.52388 -12.43009 -12.31949 -12.23066 -12.20384 -11.93464 -11.84829 -11.48319 -11.24757 -10.94550 -10.36039 -9.73594 -9.08391 -8.74352 -7.47771 -0.00888 0.16829 0.26112 1.08900 1.34711 1.38101 1.42157 1.56672 1.93996 2.23328 2.60747 2.63121 2.93132 3.23222 3.50862 3.62330 3.72584 3.84980 4.11199 4.15978 4.31140 4.35004 4.47072 4.63362 4.77438 4.92987 4.95128 4.99308 5.24767 5.29771 5.34950 5.59205 5.71185 5.91226 6.01460 6.18235 6.79654 6.86746 8.22971 Molecular weight = 330.03amu Principal moments of inertia in cm(-1) A = 0.021776 B = 0.003557 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.522724 B = 7869.049319 C = 8102.939361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.066 3.934 3 Si 0.995 3.005 4 H -0.236 1.236 5 H -0.262 1.262 6 H -0.266 1.266 7 C -1.032 5.032 8 H 0.134 0.866 9 S 2.706 3.294 10 O -1.041 7.041 11 O -1.034 7.034 12 N -1.101 6.101 13 C 0.142 3.858 14 H 0.121 0.879 15 C -0.080 4.080 16 C -0.124 4.124 17 C -0.059 4.059 18 C -0.129 4.129 19 C -0.015 4.015 20 Cl -0.066 7.066 21 C -0.151 4.151 22 C 0.159 3.841 23 N -0.652 5.652 24 C 0.501 3.499 25 O -0.543 6.543 26 H 0.298 0.702 27 H 0.418 0.582 28 H 0.124 0.876 29 H 0.130 0.870 30 H 0.173 0.827 31 H 0.159 0.841 32 H 0.146 0.854 33 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.265 -14.915 -2.581 22.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.146 4.146 3 Si 0.812 3.188 4 H -0.158 1.158 5 H -0.186 1.186 6 H -0.190 1.190 7 C -1.166 5.166 8 H 0.152 0.848 9 S 2.808 3.192 10 O -1.032 7.032 11 O -1.024 7.024 12 N -0.860 5.860 13 C 0.030 3.970 14 H 0.138 0.862 15 C -0.118 4.118 16 C -0.127 4.127 17 C -0.077 4.077 18 C -0.148 4.148 19 C -0.042 4.042 20 Cl -0.037 7.037 21 C -0.173 4.173 22 C 0.063 3.937 23 N -0.296 5.296 24 C 0.286 3.714 25 O -0.417 6.417 26 H 0.108 0.892 27 H 0.253 0.747 28 H 0.142 0.858 29 H 0.148 0.852 30 H 0.191 0.809 31 H 0.176 0.824 32 H 0.164 0.836 33 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 15.796 -14.652 -1.977 21.635 hybrid contribution -0.339 0.119 0.153 0.390 sum 15.457 -14.533 -1.825 21.294 Atomic orbital electron populations 1.70025 1.09078 1.32289 1.41489 1.26108 0.95346 1.05692 0.87481 0.85041 0.80026 0.74704 0.79004 1.15807 1.18616 1.19017 1.30851 1.07657 1.11515 1.66593 0.84780 1.00414 0.72835 0.74368 0.71602 1.93322 1.74556 1.88362 1.46929 1.93390 1.74178 1.87955 1.46868 1.55497 1.54759 1.49853 1.25875 1.20971 0.91648 0.98414 0.85932 0.86158 1.20990 0.93276 0.92504 1.05056 1.19750 0.98370 0.95548 0.99060 1.21171 0.97277 0.95530 0.93721 1.21316 0.99331 0.92772 1.01401 1.20737 0.99601 0.86587 0.97307 1.98383 1.97689 1.17725 1.89883 1.20672 1.02856 0.94499 0.99246 1.17626 0.92540 0.93407 0.90118 1.43491 1.46262 1.07347 1.32521 1.21699 0.79578 0.84230 0.85854 1.90815 1.39918 1.80132 1.30819 0.89220 0.74697 0.85765 0.85177 0.80945 0.82372 0.83617 0.74585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.61 13.19 21.45 0.28 -53.33 16 2 C 0.07 3.61 5.46 84.65 0.46 4.07 16 3 Si 0.99 39.84 29.54 68.60 2.03 41.87 16 4 H -0.24 -8.38 7.11 99.48 0.71 -7.67 16 5 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 6 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 7 C -1.03 -54.27 9.57 67.73 0.65 -53.62 16 8 H 0.13 5.97 7.81 -2.91 -0.02 5.95 16 9 S 2.71 144.08 4.93 -56.49 -0.28 143.81 16 10 O -1.04 -61.92 18.02 -128.00 -2.31 -64.22 16 11 O -1.03 -63.83 17.78 -128.00 -2.28 -66.11 16 12 N -1.10 -41.09 5.43 -172.83 -0.94 -42.03 16 13 C 0.14 4.50 2.91 44.17 0.13 4.63 16 14 H 0.12 4.09 7.84 -2.38 -0.02 4.07 16 15 C -0.08 -1.52 5.58 29.82 0.17 -1.36 16 16 C -0.12 -2.27 5.24 -19.75 -0.10 -2.37 16 17 C -0.06 -0.76 9.68 22.25 0.22 -0.54 16 18 C -0.13 -1.71 9.83 22.31 0.22 -1.49 16 19 C -0.02 -0.25 6.32 22.31 0.14 -0.11 16 20 Cl -0.07 -1.04 28.95 -2.72 -0.08 -1.12 16 21 C -0.15 -2.76 9.68 22.43 0.22 -2.54 16 22 C 0.16 3.37 6.54 38.16 0.25 3.62 16 23 N -0.65 -16.95 5.35 -304.27 -1.63 -18.58 16 24 C 0.50 17.53 7.29 87.68 0.64 18.17 16 25 O -0.54 -24.54 17.92 -3.04 -0.05 -24.60 16 26 H 0.30 15.99 8.31 -92.70 -0.77 15.22 16 27 H 0.42 13.28 8.46 -96.74 -0.82 12.46 16 28 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.13 1.91 8.06 -2.39 -0.02 1.89 16 30 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 31 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 32 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 33 H 0.42 9.43 8.81 -92.70 -0.82 8.61 16 Total: -1.00 -85.00 322.12 -2.70 -87.70 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: -0.44 Total: 28.15 kcal Atomic # 6 Polarization: -34.53 SS G_CDS: 2.98 Total: -31.54 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -2.28 Total: -113.94 kcal Atomic # 8 Polarization: -150.29 SS G_CDS: -4.64 Total: -154.93 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Atomic # 16 Polarization: 144.08 SS G_CDS: -0.28 Total: 143.81 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -85.00 -2.70 -87.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193003163.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.547 kcal (2) G-P(sol) polarization free energy of solvation -84.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds