Wall clock time and date at job start Tue Mar 31 2020 05:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47001 * 2 1 4 4 C 1.52998 * 109.47083 * 119.99434 * 2 1 3 5 5 H 1.09001 * 109.46720 * 56.92411 * 4 2 1 6 6 F 1.39895 * 109.47608 * 296.92215 * 4 2 1 7 7 C 1.50700 * 109.47333 * 176.91945 * 4 2 1 8 8 O 1.21282 * 120.00027 * 101.01417 * 7 4 2 9 9 N 1.34780 * 120.00337 * 281.01911 * 7 4 2 10 10 C 1.47617 * 118.74244 * 355.19527 * 9 7 4 11 11 C 1.54175 * 111.09440 * 138.19933 * 10 9 7 12 12 C 1.51276 * 109.77495 * 320.24686 * 11 10 9 13 13 N 1.46196 * 109.10449 * 92.30630 * 12 11 10 14 14 C 1.46897 * 110.99663 * 144.77184 * 13 12 11 15 15 C 1.50703 * 109.46908 * 197.07558 * 14 13 12 16 16 O 1.21292 * 119.99815 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00257 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00461 * 180.02562 * 17 15 14 19 19 H 1.08004 * 119.99779 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00450 * 180.02562 * 18 17 15 21 21 N 1.31408 * 119.99596 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00017 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46981 * 90.00137 * 22 20 18 24 24 H 1.48503 * 109.46839 * 209.99855 * 22 20 18 25 25 H 1.48492 * 109.47317 * 329.99796 * 22 20 18 26 26 C 1.41447 * 116.34156 * 272.96964 * 13 12 11 27 27 C 1.44874 * 118.75052 * 175.46432 * 9 7 4 28 28 H 1.09007 * 109.46915 * 60.00039 * 1 2 3 29 29 H 1.09001 * 109.47178 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47473 * 300.00521 * 1 2 3 31 31 H 1.08996 * 109.47488 * 240.00031 * 2 1 3 32 32 H 1.08997 * 109.46968 * 56.20488 * 3 2 1 33 33 H 1.09003 * 109.47151 * 176.20775 * 3 2 1 34 34 H 1.09001 * 109.46964 * 296.20430 * 3 2 1 35 35 H 1.09003 * 109.11594 * 258.78797 * 10 9 7 36 36 H 1.09002 * 109.11654 * 17.84928 * 10 9 7 37 37 H 1.08999 * 109.45386 * 200.09998 * 11 10 9 38 38 H 1.09002 * 109.28768 * 80.28018 * 11 10 9 39 39 H 1.09000 * 109.52797 * 332.41356 * 12 11 10 40 40 H 1.09005 * 109.58922 * 212.22968 * 12 11 10 41 41 H 1.08996 * 109.47599 * 317.07458 * 14 13 12 42 42 H 1.09004 * 109.47429 * 77.07924 * 14 13 12 43 43 H 0.96999 * 119.99725 * 0.02562 * 17 15 14 44 44 H 0.97007 * 119.99814 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.38706 * 303.32721 * 26 13 12 46 46 H 1.09002 * 109.37966 * 183.64012 * 26 13 12 47 47 H 1.08997 * 109.44094 * 29.78671 * 27 9 7 48 48 H 1.09002 * 109.44076 * 149.66351 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6322 -1.7316 1.2773 6 9 1.6324 -0.0220 2.3904 7 6 3.5450 -0.7876 1.2118 8 8 4.2029 -0.0107 1.8709 9 7 4.1599 -1.7104 0.4457 10 6 3.3352 -2.7102 -0.2610 11 6 3.8492 -2.9389 -1.6964 12 6 4.2700 -1.6197 -2.3056 13 7 5.6957 -1.4115 -2.0583 14 6 6.3319 -0.7262 -3.1912 15 6 7.8268 -0.8968 -3.1063 16 8 8.3142 -1.5276 -2.1922 17 7 8.6221 -0.3492 -4.0466 18 6 9.9820 -0.5048 -3.9696 19 1 10.4161 -1.0666 -3.1556 20 6 10.8020 0.0601 -4.9387 21 7 10.2739 0.7432 -5.9293 22 14 12.6549 -0.1526 -4.8341 23 1 13.0543 -1.3808 -5.5671 24 1 13.3235 1.0260 -5.4418 25 1 13.0599 -0.2719 -3.4105 26 6 6.0362 -0.7903 -0.8340 27 6 5.6054 -1.6869 0.3518 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.6221 1.9756 0.8540 33 1 3.1278 1.4434 0.0680 34 1 1.7332 1.9364 -0.9221 35 1 3.3673 -3.6515 0.2877 36 1 2.3046 -2.3576 -0.3027 37 1 3.0563 -3.3808 -2.2998 38 1 4.7038 -3.6150 -1.6694 39 1 3.6991 -0.8099 -1.8512 40 1 4.0852 -1.6377 -3.3798 41 1 5.9698 -1.1554 -4.1254 42 1 6.0849 0.3350 -3.1592 43 1 8.2323 0.1549 -4.7778 44 1 10.8463 1.1373 -6.6061 45 1 5.5290 0.1718 -0.7631 46 1 7.1142 -0.6331 -0.7958 47 1 6.0227 -1.2896 1.2770 48 1 5.9752 -2.7000 0.1936 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196790992.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:20 Heat of formation + Delta-G solvation = -108.540828 kcal Electronic energy + Delta-G solvation = -30051.865536 eV Core-core repulsion = 25863.536519 eV Total energy + Delta-G solvation = -4188.329018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -48.05467 -40.58810 -38.78108 -37.35142 -35.99871 -35.08044 -33.85070 -32.61955 -31.27405 -29.93720 -27.88057 -27.53017 -26.72722 -25.55710 -24.04215 -22.55668 -21.07028 -20.59320 -19.45362 -19.01942 -17.99640 -17.75146 -17.01433 -16.35406 -16.18843 -15.96439 -15.33278 -15.17368 -15.00684 -14.66656 -14.39396 -14.22802 -14.00201 -13.74208 -13.57325 -13.40588 -13.24644 -13.06486 -12.89652 -12.50443 -12.39430 -12.31102 -11.88094 -11.58246 -11.55886 -11.52037 -11.46752 -11.37626 -11.23106 -11.09589 -10.98291 -10.87576 -10.77228 -10.39800 -10.22275 -9.74001 -9.47537 -8.79901 -8.43858 -7.97614 -7.75078 -6.42474 -3.83169 2.28412 2.71047 3.17386 3.26266 3.32054 3.88924 3.89929 3.96990 4.05299 4.23026 4.27417 4.36377 4.53009 4.71014 4.81618 4.94081 4.96889 5.04295 5.10285 5.21180 5.25346 5.30954 5.40348 5.43120 5.45647 5.49388 5.56221 5.59034 5.64903 5.68601 5.77823 5.82244 5.85832 5.91590 6.01406 6.11308 6.14818 6.27695 6.31430 6.57091 7.10152 7.32731 7.54578 7.70381 7.92442 8.05846 8.60777 9.17448 9.53737 10.05129 10.75238 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.022727 B = 0.002671 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.717660 B =10481.144573 C =10550.610898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.152 4.152 4 C 0.081 3.919 5 H 0.103 0.897 6 F -0.185 7.185 7 C 0.486 3.514 8 O -0.518 6.518 9 N -0.600 5.600 10 C 0.100 3.900 11 C -0.132 4.132 12 C 0.071 3.929 13 N -0.540 5.540 14 C 0.054 3.946 15 C 0.442 3.558 16 O -0.578 6.578 17 N -0.564 5.564 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.062 3.938 27 C 0.119 3.881 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.046 0.954 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.014 0.986 46 H 0.113 0.887 47 H 0.087 0.913 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.574 -4.629 7.079 23.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.137 4.137 3 C -0.209 4.209 4 C 0.041 3.959 5 H 0.121 0.879 6 F -0.166 7.166 7 C 0.272 3.728 8 O -0.393 6.393 9 N -0.334 5.334 10 C -0.023 4.023 11 C -0.171 4.171 12 C -0.057 4.057 13 N -0.264 5.264 14 C -0.077 4.077 15 C 0.227 3.773 16 O -0.462 6.462 17 N -0.200 5.200 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.194 1.194 26 C -0.067 4.067 27 C -0.003 4.003 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.054 0.946 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.064 0.936 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.032 0.968 46 H 0.130 0.870 47 H 0.106 0.894 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.606 -4.948 7.965 22.639 hybrid contribution 0.322 0.965 -0.606 1.184 sum -20.283 -3.983 7.359 21.942 Atomic orbital electron populations 1.21836 0.93236 1.02345 1.03050 1.21737 0.97620 0.98257 0.96101 1.21839 1.01948 0.94500 1.02592 1.21624 0.92656 0.96958 0.84620 0.87901 1.92857 1.90729 1.81237 1.51753 1.20982 0.90296 0.81364 0.80197 1.90757 1.66330 1.40210 1.42034 1.47941 1.07853 1.30689 1.46876 1.22260 0.94088 0.91942 0.93968 1.21962 1.02275 0.99057 0.93767 1.21558 0.87687 0.96341 1.00103 1.57767 1.10696 1.55767 1.02161 1.21826 0.94973 0.96957 0.93899 1.19802 0.87459 0.84876 0.85152 1.90481 1.75660 1.44648 1.35407 1.41879 1.06816 1.47369 1.23976 1.19693 0.81042 1.31758 1.10287 0.87903 1.25256 1.00707 0.96526 0.95444 1.69612 1.36488 1.35089 1.13158 0.85865 0.82113 0.77678 0.78691 1.20412 1.20956 1.19408 1.21794 1.03620 0.93463 0.87861 1.21668 0.77705 1.01973 0.98982 0.91534 0.92221 0.91755 0.88818 0.91661 0.92043 0.91838 0.91126 0.90408 0.90196 0.89342 0.94588 0.90924 0.89456 0.93622 0.77535 0.91886 0.96784 0.86956 0.89428 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.10 37.15 0.34 -0.58 16 2 C -0.12 -0.97 2.44 -90.62 -0.22 -1.19 16 3 C -0.15 -1.53 8.85 37.16 0.33 -1.20 16 4 C 0.08 0.80 2.55 -27.88 -0.07 0.73 16 5 H 0.10 0.70 6.74 -51.93 -0.35 0.35 16 6 F -0.19 -2.32 15.79 2.25 0.04 -2.28 16 7 C 0.49 6.37 5.87 -10.98 -0.06 6.30 16 8 O -0.52 -9.06 15.77 5.56 0.09 -8.97 16 9 N -0.60 -6.98 2.17 -172.21 -0.37 -7.36 16 10 C 0.10 0.79 5.61 -2.82 -0.02 0.77 16 11 C -0.13 -1.15 5.79 -26.99 -0.16 -1.30 16 12 C 0.07 0.79 5.32 -5.08 -0.03 0.76 16 13 N -0.54 -8.29 3.60 -240.93 -0.87 -9.16 16 14 C 0.05 0.92 5.44 -4.98 -0.03 0.90 16 15 C 0.44 10.09 7.37 -10.98 -0.08 10.01 16 16 O -0.58 -14.96 13.97 5.55 0.08 -14.88 16 17 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 18 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 19 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 22 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 C 0.06 1.02 5.01 -5.74 -0.03 1.00 16 27 C 0.12 1.70 5.55 -3.97 -0.02 1.68 16 28 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.45 7.88 -51.93 -0.41 0.04 16 31 H 0.09 0.68 5.64 -51.93 -0.29 0.39 16 32 H 0.06 0.69 7.84 -51.93 -0.41 0.28 16 33 H 0.06 0.79 6.94 -51.93 -0.36 0.43 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.44 4.56 -51.93 -0.24 0.20 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.95 7.98 -51.93 -0.41 0.53 16 39 H 0.04 0.40 6.07 -51.93 -0.32 0.08 16 40 H 0.07 0.73 7.36 -51.93 -0.38 0.35 16 41 H 0.09 1.32 7.57 -51.93 -0.39 0.93 16 42 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 43 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 44 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.01 0.24 8.12 -51.93 -0.42 -0.18 16 46 H 0.11 2.26 5.62 -51.93 -0.29 1.97 16 47 H 0.09 1.35 7.22 -51.93 -0.38 0.98 16 48 H 0.09 1.26 8.11 -51.93 -0.42 0.84 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -32.90 374.43 -7.48 -40.39 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -7.44 Total: 8.41 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -0.29 Total: 10.01 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.58 Total: -54.27 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: 0.17 Total: -23.86 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.90 -7.48 -40.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196790992.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.154 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds