Wall clock time and date at job start Tue Mar 31 2020 04:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99964 * 2 1 4 4 C 1.50700 * 109.47030 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99476 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99704 * 180.02562 * 4 3 2 7 7 C 1.47504 * 118.76149 * 359.97438 * 6 4 3 8 8 C 1.53572 * 111.02723 * 138.37257 * 7 6 4 9 9 C 1.51536 * 109.58543 * 320.02604 * 8 7 6 10 10 O 1.42145 * 108.76503 * 91.39565 * 9 8 7 11 11 C 1.38017 * 119.44077 * 272.77891 * 10 9 8 12 12 H 1.09001 * 109.46886 * 303.42806 * 11 10 9 13 13 C 1.52997 * 109.47273 * 183.42953 * 11 10 9 14 14 N 1.46901 * 109.47125 * 64.99537 * 13 11 10 15 15 C 1.46898 * 110.99614 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.46984 * 180.02562 * 15 14 13 17 17 O 1.21295 * 119.99863 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00080 * 180.02562 * 16 15 14 19 19 C 1.37105 * 119.99873 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99509 * 359.71860 * 19 18 16 21 21 C 1.38950 * 120.00048 * 179.72298 * 19 18 16 22 22 N 1.31413 * 119.99930 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99918 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47151 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47086 * 119.99941 * 23 21 19 26 26 H 1.48500 * 109.46879 * 239.99997 * 23 21 19 27 27 C 1.45128 * 118.75606 * 179.97438 * 6 4 3 28 28 H 1.09001 * 109.47458 * 300.00168 * 1 2 3 29 29 H 1.09005 * 109.47043 * 59.99881 * 1 2 3 30 30 H 1.09003 * 109.47585 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46704 * 59.99945 * 3 2 1 32 32 H 1.08997 * 109.47055 * 299.99979 * 3 2 1 33 33 H 1.09000 * 109.16615 * 17.97562 * 7 6 4 34 34 H 1.08999 * 109.16771 * 258.77152 * 7 6 4 35 35 H 1.08998 * 109.45527 * 199.98404 * 8 7 6 36 36 H 1.09003 * 109.45186 * 80.05948 * 8 7 6 37 37 H 1.09006 * 109.58479 * 331.61121 * 9 8 7 38 38 H 1.08998 * 109.70837 * 211.25903 * 9 8 7 39 39 H 1.09002 * 109.46945 * 304.99795 * 13 11 10 40 40 H 1.09000 * 109.47247 * 185.00157 * 13 11 10 41 41 H 1.00897 * 110.99725 * 56.05049 * 14 13 11 42 42 H 1.09004 * 109.47320 * 60.00702 * 15 14 13 43 43 H 1.09001 * 109.47291 * 299.99999 * 15 14 13 44 44 H 0.96996 * 119.99858 * 359.72084 * 18 16 15 45 45 H 0.96999 * 119.99993 * 179.97438 * 22 21 19 46 46 H 1.08995 * 109.46050 * 149.26855 * 27 6 4 47 47 H 1.09004 * 109.45805 * 29.30889 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 8 4.0340 0.0915 0.0006 6 7 4.2764 2.2968 0.0013 7 6 3.6134 3.6144 0.0007 8 6 4.3220 4.5883 0.9536 9 6 4.7326 3.8562 2.2152 10 8 6.0514 3.3543 2.0441 11 6 6.2361 2.1168 1.4617 12 1 5.6839 1.3643 2.0247 13 6 7.7256 1.7672 1.4681 14 7 8.1874 1.6172 2.8545 15 6 9.6165 1.2800 2.8997 16 6 10.0530 1.1338 4.3347 17 8 9.2524 1.2952 5.2315 18 7 11.3331 0.8249 4.6216 19 6 11.7300 0.6914 5.9271 20 1 11.0179 0.8383 6.7256 21 6 13.0484 0.3672 6.2227 22 7 13.9147 0.1880 5.2509 23 14 13.5894 0.1860 8.0015 24 1 12.4330 0.4374 8.8986 25 1 14.1005 -1.1901 8.2257 26 1 14.6648 1.1673 8.2941 27 6 5.7203 2.1509 0.0024 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 2.5775 3.4939 0.3176 34 1 3.6324 4.0242 -1.0091 35 1 3.6445 5.4025 1.2104 36 1 5.2078 4.9942 0.4649 37 1 4.0472 3.0282 2.3967 38 1 4.7095 4.5419 3.0621 39 1 8.2880 2.5645 0.9820 40 1 7.8818 0.8323 0.9298 41 1 7.6380 0.9283 3.3460 42 1 10.1923 2.0737 2.4235 43 1 9.7853 0.3416 2.3715 44 1 11.9725 0.6926 3.9043 45 1 14.8352 -0.0379 5.4573 46 1 6.1709 2.9933 -0.5223 47 1 5.9919 1.2227 -0.5005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199591010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:00 Heat of formation + Delta-G solvation = -141.479597 kcal Electronic energy + Delta-G solvation = -28484.909355 eV Core-core repulsion = 24282.779216 eV Total energy + Delta-G solvation = -4202.130139 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.95323 -39.08038 -38.16613 -37.71104 -36.05470 -35.23983 -33.83229 -32.97415 -31.15479 -30.54616 -29.16341 -27.41383 -26.49627 -26.09375 -24.58153 -23.14259 -22.08719 -21.48802 -19.60778 -19.16996 -18.01882 -17.82441 -17.26352 -16.95356 -16.88473 -16.35078 -15.96382 -15.72756 -15.31903 -15.19820 -14.79699 -14.44389 -14.27236 -14.13605 -14.04508 -13.61246 -13.39262 -13.18161 -13.11449 -12.87263 -12.75489 -12.37095 -12.05093 -11.83214 -11.80188 -11.70071 -11.45863 -11.41506 -11.30525 -11.00114 -10.60421 -10.29656 -10.28666 -10.16701 -10.05341 -9.75513 -9.45732 -8.93681 -8.36745 -7.94150 -7.87901 -6.35742 -3.76157 2.19415 2.29246 3.20848 3.30773 3.38048 3.38824 3.56197 3.98840 4.08031 4.11390 4.26263 4.32498 4.44331 4.53248 4.62422 4.68866 4.83681 4.88623 4.91813 4.95161 5.06089 5.14043 5.18005 5.21180 5.22563 5.25309 5.31211 5.38949 5.52824 5.58392 5.68571 5.81106 5.89958 5.91729 6.07042 6.15357 6.34554 6.49580 6.86558 7.29122 7.60224 7.61369 7.77267 7.79551 8.13432 8.68485 9.24520 9.61544 10.13545 10.82276 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.021360 B = 0.002043 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.562691 B =13702.839101 C =14145.475567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.044 3.956 4 C 0.508 3.492 5 O -0.510 6.510 6 N -0.610 5.610 7 C 0.103 3.897 8 C -0.168 4.168 9 C 0.074 3.926 10 O -0.362 6.362 11 C 0.098 3.902 12 H 0.052 0.948 13 C 0.070 3.930 14 N -0.659 5.659 15 C 0.051 3.949 16 C 0.443 3.557 17 O -0.581 6.581 18 N -0.566 5.566 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.020 3.980 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.081 3.919 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.044 0.956 41 H 0.348 0.652 42 H 0.087 0.913 43 H 0.043 0.957 44 H 0.392 0.608 45 H 0.270 0.730 46 H 0.087 0.913 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.931 7.979 -16.593 30.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.036 4.036 4 C 0.294 3.706 5 O -0.384 6.384 6 N -0.346 5.346 7 C -0.019 4.019 8 C -0.206 4.206 9 C -0.003 4.003 10 O -0.280 6.280 11 C 0.038 3.962 12 H 0.070 0.930 13 C -0.060 4.060 14 N -0.292 5.292 15 C -0.082 4.082 16 C 0.228 3.772 17 O -0.465 6.465 18 N -0.203 5.203 19 C -0.426 4.426 20 H 0.121 0.879 21 C -0.181 4.181 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.043 4.043 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.062 0.938 41 H 0.167 0.833 42 H 0.105 0.895 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.080 0.920 46 H 0.106 0.894 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -24.622 8.047 -15.831 30.359 hybrid contribution 0.197 -0.864 -0.089 0.891 sum -24.425 7.183 -15.920 30.027 Atomic orbital electron populations 1.22858 0.80200 1.03528 1.00111 1.88040 1.19922 1.25072 1.95384 1.22319 0.91786 0.87114 1.02380 1.20370 0.88864 0.84452 0.76905 1.90761 1.74414 1.26074 1.47165 1.47852 1.06613 1.05889 1.74227 1.22059 0.96508 0.82818 1.00531 1.22522 1.02160 0.98529 0.97384 1.22140 0.84446 0.97254 0.96471 1.86441 1.26991 1.34316 1.80259 1.21964 0.96431 0.86265 0.91547 0.93021 1.21894 0.92699 1.00200 0.91195 1.59983 1.02703 1.54331 1.12160 1.21680 0.89915 0.99837 0.96749 1.19822 0.83499 0.84066 0.89771 1.90525 1.52694 1.55420 1.47893 1.41867 1.08229 1.61410 1.08782 1.19758 0.94763 1.44071 0.84045 0.87897 1.25261 0.95681 0.97428 0.99733 1.69625 1.04444 1.48463 1.31923 0.85799 0.78666 0.77698 0.82163 1.19240 1.20823 1.20791 1.22422 0.78941 1.04150 0.98784 0.93701 0.93801 0.88921 0.90212 0.90257 0.90089 0.91018 0.89372 0.89715 0.93516 0.88890 0.90063 0.93770 0.83289 0.89517 0.93934 0.77469 0.91999 0.89444 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.37 -3.79 10.24 -55.14 -0.56 -4.35 16 3 C 0.04 0.33 4.75 36.01 0.17 0.51 16 4 C 0.51 5.61 7.71 -10.99 -0.08 5.53 16 5 O -0.51 -8.09 15.93 -14.36 -0.23 -8.32 16 6 N -0.61 -5.40 2.19 -172.47 -0.38 -5.78 16 7 C 0.10 0.53 6.00 -3.20 -0.02 0.51 16 8 C -0.17 -0.99 5.78 -27.18 -0.16 -1.14 16 9 C 0.07 0.68 6.37 36.42 0.23 0.92 16 10 O -0.36 -4.72 9.40 -26.54 -0.25 -4.97 16 11 C 0.10 1.23 2.82 -25.78 -0.07 1.16 16 12 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 13 C 0.07 0.95 5.35 -3.83 -0.02 0.93 16 14 N -0.66 -11.69 6.06 -115.05 -0.70 -12.39 16 15 C 0.05 0.95 6.17 -4.97 -0.03 0.92 16 16 C 0.44 10.97 7.82 -10.98 -0.09 10.88 16 17 O -0.58 -16.54 15.78 5.54 0.09 -16.45 16 18 N -0.57 -14.87 5.29 -10.96 -0.06 -14.93 16 19 C -0.30 -8.53 9.68 -14.93 -0.14 -8.67 16 20 H 0.10 3.11 7.16 -52.49 -0.38 2.73 16 21 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 22 N -0.90 -25.15 13.05 55.50 0.72 -24.42 16 23 Si 0.93 21.58 29.55 -169.99 -5.02 16.55 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 27 C 0.08 0.81 4.86 -3.83 -0.02 0.79 16 28 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.42 7.41 -51.93 -0.38 0.04 16 32 H 0.08 0.38 8.04 -51.93 -0.42 -0.04 16 33 H 0.08 0.25 5.88 -51.93 -0.31 -0.05 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.58 8.01 -51.93 -0.42 0.16 16 37 H 0.05 0.44 7.40 -51.93 -0.38 0.06 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.35 6.49 8.43 -39.29 -0.33 6.16 16 42 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 43 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.39 9.81 7.90 -40.82 -0.32 9.49 16 45 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.09 0.74 8.11 -51.93 -0.42 0.32 16 47 H 0.09 1.05 7.27 -51.93 -0.38 0.67 16 LS Contribution 386.11 15.07 5.82 5.82 Total: -1.00 -37.30 386.11 -7.30 -44.61 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -7.52 Total: 10.55 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 0.79 Total: 14.07 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.41 Total: -57.51 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.96 Total: -34.08 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.30 -7.30 -44.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199591010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.874 kcal (2) G-P(sol) polarization free energy of solvation -37.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds