Wall clock time and date at job start Tue Mar 31 2020 05:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 111.00358 * 2 1 4 4 C 1.46901 * 111.00271 * 123.96101 * 2 1 3 5 5 C 1.53001 * 109.47157 * 75.75668 * 4 2 1 6 6 O 1.42896 * 109.47303 * 65.08615 * 5 4 2 7 7 C 1.42894 * 114.00084 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47266 * 180.02562 * 7 6 5 9 9 O 1.21284 * 119.99955 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00316 * 180.02562 * 8 7 6 11 11 C 1.47507 * 118.75441 * 359.97438 * 10 8 7 12 12 C 1.53567 * 111.02787 * 138.39895 * 11 10 8 13 13 C 1.51538 * 109.57661 * 320.01443 * 12 11 10 14 14 O 1.42153 * 108.75536 * 91.40413 * 13 12 11 15 15 C 1.38011 * 119.44053 * 272.77315 * 14 13 12 16 16 H 1.09004 * 109.47105 * 303.42786 * 15 14 13 17 17 C 1.53006 * 109.47307 * 183.42956 * 15 14 13 18 18 N 1.46506 * 109.46585 * 65.00204 * 17 15 14 19 19 C 1.36932 * 119.99578 * 179.97438 * 18 17 15 20 20 H 1.08009 * 120.00217 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99918 * 179.97438 * 19 18 17 22 22 N 1.31613 * 120.00101 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99959 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47289 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47129 * 120.00201 * 23 21 19 26 26 H 1.48497 * 109.47365 * 240.00223 * 23 21 19 27 27 C 1.45125 * 118.75929 * 180.02562 * 10 8 7 28 28 H 1.09007 * 109.46832 * 296.04281 * 1 2 3 29 29 H 1.09000 * 109.47528 * 56.03426 * 1 2 3 30 30 H 1.08994 * 109.47661 * 176.04536 * 1 2 3 31 31 H 1.08994 * 109.47663 * 188.85170 * 3 2 1 32 32 H 1.09000 * 109.47253 * 308.85516 * 3 2 1 33 33 H 1.09009 * 109.46972 * 68.85216 * 3 2 1 34 34 H 1.09003 * 109.46949 * 315.75327 * 4 2 1 35 35 H 1.09002 * 109.46982 * 195.75902 * 4 2 1 36 36 H 1.09002 * 109.46872 * 305.08815 * 5 4 2 37 37 H 1.08996 * 109.46884 * 185.08726 * 5 4 2 38 38 H 1.08999 * 109.47469 * 60.00025 * 7 6 5 39 39 H 1.09004 * 109.47217 * 299.99857 * 7 6 5 40 40 H 1.08997 * 109.16949 * 17.99400 * 11 10 8 41 41 H 1.09006 * 109.12271 * 258.76920 * 11 10 8 42 42 H 1.09002 * 109.45454 * 199.98248 * 12 11 10 43 43 H 1.09005 * 109.45634 * 80.04950 * 12 11 10 44 44 H 1.08993 * 109.59263 * 331.62323 * 13 12 11 45 45 H 1.08997 * 109.58854 * 211.17916 * 13 12 11 46 46 H 1.09002 * 109.47031 * 185.00180 * 17 15 14 47 47 H 1.08998 * 109.47033 * 305.00084 * 17 15 14 48 48 H 0.96997 * 119.99868 * 0.02562 * 18 17 15 49 49 H 0.96998 * 120.00206 * 180.02562 * 22 21 19 50 50 H 1.08994 * 109.45980 * 29.28418 * 27 10 8 51 51 H 1.08997 * 109.45626 * 149.26247 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 1.8469 -2.2628 0.8568 6 8 2.6711 -2.6234 -0.2534 7 6 2.6052 -4.0079 -0.6007 8 6 3.5087 -4.2743 -1.7771 9 8 4.1459 -3.3676 -2.2699 10 7 3.6078 -5.5199 -2.2822 11 6 2.8202 -6.6020 -1.6620 12 6 2.2097 -7.5210 -2.7302 13 6 1.7177 -6.6874 -3.8962 14 8 2.7632 -6.5777 -4.8530 15 6 3.6907 -5.5630 -4.7309 16 1 3.1774 -4.6015 -4.7144 17 6 4.6537 -5.6066 -5.9191 18 7 3.9201 -5.3147 -7.1532 19 6 4.5789 -5.2971 -8.3534 20 1 5.6394 -5.4988 -8.3904 21 6 3.8838 -5.0210 -9.5228 22 7 2.5915 -4.7757 -9.4778 23 14 4.7827 -4.9964 -11.1601 24 1 6.2195 -5.3013 -10.9407 25 1 4.1931 -6.0165 -12.0639 26 1 4.6502 -3.6523 -11.7774 27 6 4.4863 -5.7461 -3.4150 28 1 -0.3633 0.4512 0.9234 29 1 -0.3634 0.5741 -0.8523 30 1 -0.3634 -1.0251 -0.0709 31 1 3.0736 1.3467 -0.1581 32 1 1.5238 1.9417 -0.8003 33 1 1.7796 1.8435 0.9585 34 1 1.4384 -0.5082 2.0382 35 1 3.0490 -0.5261 1.2807 36 1 0.8059 -2.4873 0.6246 37 1 2.1535 -2.8294 1.7360 38 1 1.5799 -4.2683 -0.8634 39 1 2.9272 -4.6112 0.2481 40 1 2.0193 -6.1650 -1.0656 41 1 3.4697 -7.1896 -1.0131 42 1 1.3738 -8.0725 -2.2999 43 1 2.9661 -8.2237 -3.0799 44 1 1.4392 -5.6944 -3.5437 45 1 0.8541 -7.1712 -4.3525 46 1 5.4384 -4.8632 -5.7783 47 1 5.1009 -6.5982 -5.9881 48 1 2.9678 -5.1331 -7.1198 49 1 2.1056 -4.5831 -10.2950 50 1 5.3088 -5.0315 -3.3850 51 1 4.8840 -6.7599 -3.3693 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201864306.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:09 Heat of formation + Delta-G solvation = -86.164240 kcal Electronic energy + Delta-G solvation = -29395.692453 eV Core-core repulsion = 25331.794062 eV Total energy + Delta-G solvation = -4063.898391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.56787 -38.85493 -38.12019 -36.75751 -35.60844 -34.52626 -32.82503 -30.91321 -30.75080 -29.31276 -27.85065 -27.54930 -26.38979 -24.78567 -24.24575 -22.58283 -21.69886 -21.35865 -20.89303 -19.21609 -17.59015 -17.17357 -17.00897 -16.78986 -16.39140 -16.05340 -15.83631 -15.42282 -15.19651 -15.01482 -14.55938 -14.51905 -14.20007 -13.71622 -13.65276 -13.18002 -13.02837 -12.81703 -12.77732 -12.60674 -12.52762 -12.48471 -12.21068 -11.95463 -11.94526 -11.68751 -11.58708 -11.35789 -11.17466 -10.92888 -10.75636 -10.73417 -10.20481 -9.94460 -9.89696 -9.68462 -9.58566 -9.35540 -8.77287 -8.56845 -8.51350 -6.77975 -5.63309 -2.91172 2.55151 2.62974 3.52176 3.55684 3.57228 3.59808 3.66931 4.00641 4.35543 4.57291 4.65767 4.70950 4.71754 4.73215 4.82475 4.90813 4.92654 4.97715 5.05130 5.06282 5.11910 5.29037 5.29607 5.34234 5.35574 5.38539 5.46291 5.49488 5.51402 5.64475 5.65927 5.69925 5.70041 5.87905 6.00061 6.05142 6.15417 6.40523 6.50409 6.69395 6.74085 6.74836 6.85791 6.92637 7.24372 7.81120 8.06125 8.17121 8.54945 9.66417 10.25204 10.61169 11.59812 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.011548 B = 0.002715 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.181155 B =10309.354763 C =11811.219970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.538 5.538 3 C 0.027 3.973 4 C 0.056 3.944 5 C 0.066 3.934 6 O -0.345 6.345 7 C 0.046 3.954 8 C 0.507 3.493 9 O -0.505 6.505 10 N -0.611 5.611 11 C 0.105 3.895 12 C -0.167 4.167 13 C 0.073 3.927 14 O -0.368 6.368 15 C 0.088 3.912 16 H 0.053 0.947 17 C 0.166 3.834 18 N -0.726 5.726 19 C -0.235 4.235 20 H 0.071 0.929 21 C -0.016 4.016 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.292 1.292 27 C 0.083 3.917 28 H 0.022 0.978 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.022 0.978 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.046 0.954 45 H 0.089 0.911 46 H 0.035 0.965 47 H 0.027 0.973 48 H 0.387 0.613 49 H 0.253 0.747 50 H 0.094 0.906 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.448 0.798 28.720 29.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.262 5.262 3 C -0.121 4.121 4 C -0.072 4.072 5 C -0.011 4.011 6 O -0.262 6.262 7 C -0.034 4.034 8 C 0.293 3.707 9 O -0.378 6.378 10 N -0.347 5.347 11 C -0.017 4.017 12 C -0.205 4.205 13 C -0.004 4.004 14 O -0.286 6.286 15 C 0.028 3.972 16 H 0.071 0.929 17 C 0.038 3.962 18 N -0.370 5.370 19 C -0.366 4.366 20 H 0.089 0.911 21 C -0.212 4.212 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.040 4.040 28 H 0.041 0.959 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.040 0.960 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.053 0.947 47 H 0.045 0.955 48 H 0.220 0.780 49 H 0.063 0.937 50 H 0.112 0.888 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.660 1.074 27.667 28.077 hybrid contribution -0.510 0.322 0.337 0.691 sum -5.169 1.396 28.004 28.512 Atomic orbital electron populations 1.22458 0.87479 1.02245 1.00390 1.61843 1.07632 1.13963 1.42783 1.22388 1.01406 0.88387 0.99958 1.22145 1.01413 0.92248 0.91360 1.22571 0.94419 0.95382 0.88761 1.88144 1.66121 1.21990 1.49970 1.22243 0.99223 0.85575 0.96406 1.20311 0.83145 0.82639 0.84625 1.90776 1.44151 1.42804 1.60063 1.47890 1.45656 1.08074 1.33089 1.22006 0.94924 0.89294 0.95520 1.22518 1.02046 0.99129 0.96824 1.22106 0.90388 0.98658 0.89215 1.86431 1.38981 1.51986 1.51224 1.22297 0.90200 0.90500 0.94210 0.92908 1.20612 0.92435 0.98215 0.84937 1.42239 1.08952 1.84816 1.01027 1.19282 0.92912 1.39679 0.84718 0.91129 1.24736 0.95771 1.02932 0.97747 1.69688 1.06640 1.55009 1.26803 0.86109 0.78618 0.77096 0.84345 1.20582 1.21979 1.21956 1.22429 0.93659 1.02876 0.85040 0.95911 0.91127 0.91458 0.91005 0.91246 0.95965 0.93051 0.89780 0.93158 0.92959 0.90621 0.90800 0.90312 0.91325 0.89694 0.89824 0.93552 0.89285 0.94722 0.95501 0.77952 0.93705 0.88770 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.39 60.06 0.56 0.75 16 2 N -0.54 -5.54 4.90 -251.26 -1.23 -6.77 16 3 C 0.03 0.24 9.52 60.06 0.57 0.81 16 4 C 0.06 0.48 5.38 -3.82 -0.02 0.46 16 5 C 0.07 0.56 6.13 37.16 0.23 0.79 16 6 O -0.34 -4.40 9.82 -55.14 -0.54 -4.94 16 7 C 0.05 0.47 4.76 36.00 0.17 0.65 16 8 C 0.51 7.34 7.71 -10.98 -0.08 7.26 16 9 O -0.50 -9.89 15.93 -14.36 -0.23 -10.12 16 10 N -0.61 -7.72 2.19 -172.44 -0.38 -8.10 16 11 C 0.11 0.88 6.00 -3.20 -0.02 0.86 16 12 C -0.17 -1.55 5.78 -27.18 -0.16 -1.70 16 13 C 0.07 0.97 6.38 36.42 0.23 1.20 16 14 O -0.37 -6.69 9.38 -26.52 -0.25 -6.94 16 15 C 0.09 1.64 2.68 -25.75 -0.07 1.57 16 16 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 17 C 0.17 3.67 5.92 -4.04 -0.02 3.64 16 18 N -0.73 -20.01 5.54 -59.90 -0.33 -20.34 16 19 C -0.23 -6.96 9.99 -15.06 -0.15 -7.11 16 20 H 0.07 2.02 7.83 -52.48 -0.41 1.61 16 21 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 22 N -0.93 -29.64 13.06 55.49 0.72 -28.92 16 23 Si 0.91 23.39 29.55 -169.99 -5.02 18.36 16 24 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 26 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 27 C 0.08 1.24 4.87 -3.80 -0.02 1.22 16 28 H 0.02 0.15 8.09 -51.93 -0.42 -0.27 16 29 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 30 H 0.07 0.53 6.80 -51.93 -0.35 0.18 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.58 8.04 -51.93 -0.42 0.17 16 33 H 0.02 0.16 8.13 -51.92 -0.42 -0.26 16 34 H 0.05 0.33 7.96 -51.93 -0.41 -0.09 16 35 H 0.08 0.75 7.94 -51.93 -0.41 0.33 16 36 H 0.05 0.38 6.78 -51.93 -0.35 0.03 16 37 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.64 7.41 -51.93 -0.38 0.25 16 39 H 0.07 0.54 8.04 -51.93 -0.42 0.12 16 40 H 0.08 0.48 5.88 -51.93 -0.31 0.17 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.86 8.01 -51.93 -0.42 0.45 16 44 H 0.05 0.63 7.40 -51.93 -0.38 0.24 16 45 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.39 11.34 7.65 -40.82 -0.31 11.03 16 49 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 50 H 0.09 1.51 7.27 -51.93 -0.38 1.14 16 51 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 LS Contribution 404.55 15.07 6.10 6.10 Total: -1.00 -38.03 404.55 -9.19 -47.22 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -9.16 Total: 4.64 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 1.13 Total: 9.81 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: -1.22 Total: -64.13 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -1.02 Total: -22.00 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.02 Total: 18.36 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -38.03 -9.19 -47.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201864306.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.940 kcal (2) G-P(sol) polarization free energy of solvation -38.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds