Wall clock time and date at job start Tue Mar 31 2020 05:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46984 * 2 1 4 4 C 1.52997 * 109.47158 * 119.99667 * 2 1 3 5 5 H 1.09001 * 109.47531 * 185.00085 * 4 2 1 6 6 F 1.39903 * 109.47523 * 305.00626 * 4 2 1 7 7 C 1.50701 * 109.47185 * 65.00300 * 4 2 1 8 8 O 1.21284 * 119.99959 * 258.77427 * 7 4 2 9 9 N 1.34778 * 120.00095 * 79.04513 * 7 4 2 10 10 C 1.46923 * 120.63432 * 184.66840 * 9 7 4 11 11 C 1.52751 * 109.00802 * 233.58268 * 10 9 7 12 12 C 1.53040 * 109.38438 * 305.58634 * 11 10 9 13 13 N 1.46900 * 109.44892 * 181.25467 * 12 11 10 14 14 C 1.46898 * 111.00373 * 84.93986 * 13 12 11 15 15 C 1.50699 * 109.47400 * 180.02562 * 14 13 12 16 16 O 1.21289 * 120.00183 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99732 * 179.97438 * 15 14 13 18 18 C 1.37094 * 119.99582 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00314 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99985 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00002 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00144 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46880 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47271 * 120.00090 * 22 20 18 25 25 H 1.48502 * 109.46804 * 239.99954 * 22 20 18 26 26 C 1.53037 * 109.53692 * 61.24113 * 12 11 10 27 27 C 1.46928 * 120.62874 * 4.94306 * 9 7 4 28 28 H 1.08994 * 109.47300 * 299.99952 * 1 2 3 29 29 H 1.09006 * 109.46603 * 60.00272 * 1 2 3 30 30 H 1.09004 * 109.46790 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47794 * 239.99910 * 2 1 3 32 32 H 1.09007 * 109.47342 * 59.99999 * 3 2 1 33 33 H 1.09001 * 109.47419 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47334 * 299.99715 * 3 2 1 35 35 H 1.09005 * 109.58283 * 353.41512 * 10 9 7 36 36 H 1.09000 * 109.58915 * 113.84091 * 10 9 7 37 37 H 1.09000 * 109.56537 * 185.54731 * 11 10 9 38 38 H 1.09003 * 109.36456 * 65.49643 * 11 10 9 39 39 H 1.08999 * 109.45976 * 301.21573 * 12 11 10 40 40 H 1.00906 * 111.00141 * 320.97994 * 13 12 11 41 41 H 1.09003 * 109.46844 * 300.00049 * 14 13 12 42 42 H 1.09002 * 109.47238 * 59.99678 * 14 13 12 43 43 H 0.96992 * 120.00384 * 359.97438 * 17 15 14 44 44 H 0.96994 * 120.00186 * 179.97438 * 21 20 18 45 45 H 1.09007 * 109.49645 * 178.68631 * 26 12 11 46 46 H 1.08998 * 109.50238 * 58.58613 * 26 12 11 47 47 H 1.09004 * 109.58849 * 246.15991 * 27 9 7 48 48 H 1.09006 * 109.58369 * 6.43883 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1263 -0.6443 1.2952 6 9 1.4821 -0.1315 2.3887 7 6 1.6414 -2.1732 1.1890 8 8 0.6920 -2.5687 1.8319 9 7 2.3432 -3.0336 0.4248 10 6 1.9075 -4.4287 0.2750 11 6 3.0686 -5.3538 0.6346 12 6 4.2924 -4.9834 -0.2064 13 7 5.4009 -5.8916 0.1167 14 6 5.3129 -7.1300 -0.6684 15 6 6.4635 -8.0348 -0.3102 16 8 7.2772 -7.6825 0.5173 17 7 6.5884 -9.2356 -0.9095 18 6 7.6355 -10.0585 -0.5840 19 1 8.3600 -9.7448 0.1529 20 6 7.7640 -11.2966 -1.2014 21 7 6.8816 -11.6791 -2.0970 22 14 9.1903 -12.4182 -0.7574 23 1 10.0363 -11.7599 0.2703 24 1 8.6645 -13.6988 -0.2202 25 1 10.0045 -12.6872 -1.9699 26 6 4.7074 -3.5428 0.1009 27 6 3.5618 -2.5956 -0.2693 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.0674 -4.6227 0.9419 36 1 1.6066 -4.6087 -0.7571 37 1 2.7877 -6.3875 0.4326 38 1 3.3063 -5.2410 1.6923 39 1 4.0465 -5.0727 -1.2645 40 1 5.4283 -6.0914 1.1054 41 1 4.3721 -7.6343 -0.4473 42 1 5.3556 -6.8905 -1.7309 43 1 5.9375 -9.5175 -1.5710 44 1 6.9715 -12.5432 -2.5282 45 1 5.5931 -3.2874 -0.4810 46 1 4.9297 -3.4469 1.1636 47 1 3.3986 -2.6231 -1.3467 48 1 3.8115 -1.5796 0.0366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202047112.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:39 Heat of formation + Delta-G solvation = -130.272924 kcal Electronic energy + Delta-G solvation = -28530.907379 eV Core-core repulsion = 24341.635987 eV Total energy + Delta-G solvation = -4189.271392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.17286 -40.58038 -38.59184 -37.72910 -36.08226 -35.16277 -33.89626 -31.68084 -31.47855 -31.10989 -28.32578 -27.67174 -26.75796 -24.72449 -23.49315 -23.32117 -21.55099 -20.71184 -19.71581 -19.15833 -18.09635 -17.88093 -17.13028 -16.51419 -16.14877 -15.66954 -15.46133 -15.15013 -14.90688 -14.68488 -14.59781 -14.33430 -14.05035 -13.90215 -13.80014 -13.58893 -13.36361 -13.26847 -12.77341 -12.68662 -12.55301 -12.49058 -12.23318 -12.02052 -11.70283 -11.64253 -11.54398 -11.48925 -11.40801 -11.18250 -11.09453 -10.96208 -10.74895 -10.36363 -10.24981 -9.94430 -9.54807 -9.07411 -8.50820 -8.09671 -7.98783 -6.44496 -3.85326 2.09583 2.43942 3.14456 3.25285 3.32492 3.77271 3.87281 3.92180 3.99751 4.13022 4.21631 4.25444 4.46161 4.58676 4.70510 4.75250 4.83773 4.92837 4.95493 4.98633 5.10292 5.17190 5.19559 5.21184 5.25667 5.36212 5.41058 5.41569 5.51054 5.51499 5.59339 5.72304 5.74198 5.77060 5.86322 5.91146 5.94647 6.03182 6.19149 6.24294 6.91078 7.16313 7.52962 7.58757 7.69104 8.03708 8.58177 9.15292 9.51320 10.02532 10.73255 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.035632 B = 0.001913 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.632107 B =14632.977860 C =14775.271041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.149 4.149 4 C 0.081 3.919 5 H 0.108 0.892 6 F -0.184 7.184 7 C 0.495 3.505 8 O -0.522 6.522 9 N -0.605 5.605 10 C 0.116 3.884 11 C -0.168 4.168 12 C 0.088 3.912 13 N -0.663 5.663 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C -0.123 4.123 27 C 0.102 3.898 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.351 0.649 41 H 0.043 0.957 42 H 0.086 0.914 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.296 22.914 -0.805 26.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.135 4.135 3 C -0.206 4.206 4 C 0.042 3.958 5 H 0.125 0.875 6 F -0.164 7.164 7 C 0.281 3.719 8 O -0.398 6.398 9 N -0.340 5.340 10 C -0.007 4.007 11 C -0.208 4.208 12 C -0.023 4.023 13 N -0.294 5.294 14 C -0.082 4.082 15 C 0.225 3.775 16 O -0.468 6.468 17 N -0.200 5.200 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.162 4.162 27 C -0.021 4.021 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.171 0.829 41 H 0.061 0.939 42 H 0.104 0.896 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.108 0.892 46 H 0.088 0.912 47 H 0.095 0.905 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.820 23.051 -0.407 25.908 hybrid contribution -0.410 -1.397 0.183 1.467 sum -12.230 21.654 -0.224 24.870 Atomic orbital electron populations 1.21834 0.93424 1.02839 1.02761 1.21679 0.98213 0.97609 0.95983 1.21853 1.01256 0.94470 1.03059 1.21618 0.99361 0.90063 0.84793 0.87486 1.92869 1.87562 1.84157 1.51839 1.20927 0.83420 0.88126 0.79418 1.90748 1.28322 1.78356 1.42326 1.48131 1.26396 1.11001 1.48444 1.21499 0.97822 0.79203 1.02129 1.22659 0.96568 0.99891 1.01655 1.21572 0.88529 0.92883 0.99271 1.60184 1.43026 1.14295 1.11858 1.21706 0.97057 0.90474 0.98971 1.19816 0.88437 0.83298 0.85928 1.90526 1.44980 1.74776 1.36486 1.41873 1.26005 1.14558 1.37599 1.19754 1.04267 0.96705 1.22120 0.87861 1.25273 0.98691 0.97832 0.96209 1.69617 1.35640 1.22091 1.26947 0.85796 0.80584 0.79520 0.78429 1.19205 1.20763 1.20729 1.21908 0.97490 0.93783 1.03029 1.21980 0.83968 0.98730 0.97463 0.91576 0.91816 0.92199 0.88919 0.91730 0.92043 0.91523 0.88920 0.91045 0.90300 0.91090 0.90218 0.82950 0.93856 0.89606 0.77474 0.91907 0.89242 0.91197 0.90473 0.89657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.84 37.16 0.33 -0.79 16 2 C -0.12 -0.71 2.62 -90.62 -0.24 -0.95 16 3 C -0.15 -0.71 9.11 37.16 0.34 -0.38 16 4 C 0.08 0.67 2.56 -27.88 -0.07 0.60 16 5 H 0.11 0.62 6.38 -51.93 -0.33 0.29 16 6 F -0.18 -2.05 15.72 2.25 0.04 -2.01 16 7 C 0.50 5.33 6.03 -10.98 -0.07 5.27 16 8 O -0.52 -7.78 15.91 5.55 0.09 -7.69 16 9 N -0.61 -5.35 2.98 -173.03 -0.52 -5.86 16 10 C 0.12 1.08 6.41 -3.94 -0.03 1.05 16 11 C -0.17 -1.69 5.31 -26.84 -0.14 -1.83 16 12 C 0.09 0.93 2.43 -67.67 -0.16 0.77 16 13 N -0.66 -9.83 5.87 -107.95 -0.63 -10.47 16 14 C 0.05 0.84 5.96 -4.98 -0.03 0.81 16 15 C 0.44 10.14 7.82 -10.98 -0.09 10.06 16 16 O -0.58 -15.63 15.78 5.55 0.09 -15.54 16 17 N -0.56 -14.07 5.29 -10.96 -0.06 -14.12 16 18 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.30 13.05 55.50 0.72 -23.58 16 22 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 C -0.12 -1.07 5.69 -26.61 -0.15 -1.22 16 27 C 0.10 0.65 5.65 -3.71 -0.02 0.63 16 28 H 0.07 0.55 7.68 -51.93 -0.40 0.15 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.55 7.21 -51.93 -0.37 0.17 16 31 H 0.09 0.45 7.46 -51.93 -0.39 0.06 16 32 H 0.06 0.36 7.94 -51.92 -0.41 -0.05 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.09 1.01 7.00 -51.93 -0.36 0.64 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.81 7.42 -51.93 -0.39 0.42 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.79 7.80 -51.93 -0.40 0.39 16 40 H 0.35 5.59 8.18 -39.29 -0.32 5.27 16 41 H 0.04 0.65 7.41 -51.93 -0.38 0.26 16 42 H 0.09 1.30 8.06 -51.93 -0.42 0.89 16 43 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 44 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.09 0.78 8.14 -51.92 -0.42 0.35 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.09 0.37 5.38 -51.93 -0.28 0.09 16 LS Contribution 385.51 15.07 5.81 5.81 Total: -1.00 -33.62 385.51 -7.73 -41.35 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -7.68 Total: 10.15 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -0.57 Total: 6.07 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.48 Total: -54.03 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.18 Total: -23.23 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.62 -7.73 -41.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202047112.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.919 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds