Wall clock time and date at job start Tue Mar 31 2020 05:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46893 * 2 1 4 4 C 1.52997 * 109.47107 * 120.00335 * 2 1 3 5 5 H 1.09002 * 109.46917 * 304.52688 * 4 2 1 6 6 F 1.39904 * 109.47227 * 184.52736 * 4 2 1 7 7 C 1.50704 * 109.47265 * 64.52492 * 4 2 1 8 8 O 1.21285 * 119.99784 * 43.77352 * 7 4 2 9 9 N 1.34779 * 120.00048 * 223.77070 * 7 4 2 10 10 C 1.46927 * 120.62755 * 173.98797 * 9 7 4 11 11 C 1.53196 * 108.77344 * 126.66730 * 10 9 7 12 12 C 1.53036 * 109.31253 * 54.63126 * 11 10 9 13 13 N 1.46900 * 109.45933 * 178.61050 * 12 11 10 14 14 C 1.46894 * 111.00201 * 275.07139 * 13 12 11 15 15 C 1.50702 * 109.47083 * 179.97438 * 14 13 12 16 16 O 1.21288 * 119.99926 * 359.97438 * 15 14 13 17 17 N 1.34784 * 119.99943 * 179.97438 * 15 14 13 18 18 C 1.37100 * 119.99817 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99711 * 0.02562 * 18 17 15 20 20 C 1.38942 * 119.99680 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00485 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99929 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47122 * 60.00156 * 22 20 18 24 24 H 1.48496 * 109.47337 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47142 * 300.00081 * 22 20 18 26 26 C 1.53035 * 109.53930 * 298.63474 * 12 11 10 27 27 C 1.46919 * 120.62772 * 354.26425 * 9 7 4 28 28 H 1.09000 * 109.47020 * 299.99590 * 1 2 3 29 29 H 1.09000 * 109.47496 * 59.99814 * 1 2 3 30 30 H 1.09001 * 109.47146 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47020 * 240.00410 * 2 1 3 32 32 H 1.09007 * 109.46904 * 177.34307 * 3 2 1 33 33 H 1.08995 * 109.47354 * 297.34474 * 3 2 1 34 34 H 1.09007 * 109.47244 * 57.34777 * 3 2 1 35 35 H 1.08999 * 109.58141 * 246.45424 * 10 9 7 36 36 H 1.09002 * 109.58759 * 6.87764 * 10 9 7 37 37 H 1.08997 * 109.49517 * 294.67746 * 11 10 9 38 38 H 1.09003 * 109.49444 * 174.58467 * 11 10 9 39 39 H 1.09001 * 109.46083 * 58.65502 * 12 11 10 40 40 H 1.00902 * 110.99869 * 151.11405 * 13 12 11 41 41 H 1.09000 * 109.47305 * 299.99612 * 14 13 12 42 42 H 1.08998 * 109.47276 * 60.00097 * 14 13 12 43 43 H 0.96999 * 119.99760 * 0.02562 * 17 15 14 44 44 H 0.96996 * 120.00450 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.49887 * 301.41010 * 26 12 11 46 46 H 1.09008 * 109.52471 * 181.33189 * 26 12 11 47 47 H 1.08992 * 109.59180 * 353.12136 * 27 9 7 48 48 H 1.09011 * 109.58428 * 113.40797 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6119 -0.2565 2.1373 6 9 3.4351 -0.6318 1.3025 7 6 1.6313 -2.1708 1.1944 8 8 1.7444 -2.7941 0.1601 9 7 1.1401 -2.7746 2.2947 10 6 0.6155 -4.1453 2.2253 11 6 1.3141 -4.9951 3.2915 12 6 1.1495 -4.3275 4.6587 13 7 1.7897 -5.1567 5.6884 14 6 0.8779 -6.2075 6.1601 15 6 1.5682 -7.0362 7.2127 16 8 2.7077 -6.7772 7.5376 17 7 0.9192 -8.0651 7.7931 18 6 1.5470 -8.8186 8.7511 19 1 2.5614 -8.5875 9.0409 20 6 0.8778 -9.8790 9.3497 21 7 -0.3567 -10.1599 8.9974 22 14 1.7328 -10.9053 10.6555 23 1 2.1183 -10.0350 11.7953 24 1 0.8110 -11.9672 11.1326 25 1 2.9492 -11.5299 10.0761 26 6 1.8064 -2.9455 4.6358 27 6 1.1135 -2.0724 3.5849 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1290 1.4429 0.0476 33 1 1.7160 1.9424 -0.9128 34 1 1.6383 1.9699 0.8653 35 1 -0.4584 -4.1353 2.4117 36 1 0.8132 -4.5627 1.2380 37 1 2.3743 -5.0788 3.0527 38 1 0.8665 -5.9887 3.3154 39 1 0.0887 -4.2216 4.8857 40 1 2.1172 -4.5905 6.4567 41 1 -0.0151 -5.7496 6.5856 42 1 0.5954 -6.8460 5.3231 43 1 0.0080 -8.2724 7.5330 44 1 -0.8237 -10.9003 9.4150 45 1 2.8620 -3.0485 4.3845 46 1 1.7097 -2.4799 5.6167 47 1 1.6397 -1.1222 3.4948 48 1 0.0801 -1.8912 3.8811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202047113.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:44 Heat of formation + Delta-G solvation = -127.767867 kcal Electronic energy + Delta-G solvation = -28449.337089 eV Core-core repulsion = 24260.174325 eV Total energy + Delta-G solvation = -4189.162765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -48.25104 -40.53586 -38.60426 -37.79562 -35.91903 -35.22855 -33.88479 -31.73326 -31.46810 -31.09459 -28.27313 -27.50391 -26.80323 -24.71914 -23.74396 -23.22777 -21.60178 -20.46990 -19.53161 -19.16185 -18.23317 -17.88616 -16.86795 -16.64282 -16.19785 -15.77518 -15.40623 -15.19846 -14.86782 -14.80703 -14.63276 -14.50714 -13.99464 -13.80651 -13.77296 -13.42595 -13.31368 -13.19261 -13.07381 -12.66972 -12.55372 -12.47591 -12.23866 -12.03370 -11.63901 -11.62230 -11.57402 -11.46077 -11.43991 -11.06373 -11.00521 -10.82032 -10.67351 -10.45187 -10.22627 -9.97481 -9.51404 -9.05450 -8.47631 -8.11211 -7.97551 -6.42933 -3.83902 2.06530 2.45841 3.19336 3.25119 3.29534 3.77117 3.88514 3.89931 3.98532 4.08868 4.24885 4.32731 4.41419 4.61134 4.71101 4.75741 4.96357 4.98109 5.00671 5.04244 5.07942 5.17869 5.21616 5.23169 5.31718 5.33586 5.37795 5.40009 5.51166 5.59422 5.64743 5.71398 5.77653 5.79197 5.80794 5.93903 5.95188 6.18676 6.19192 6.30682 6.91634 7.19264 7.53834 7.62045 7.66386 8.04736 8.59794 9.16474 9.52682 10.04156 10.74672 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.037470 B = 0.001905 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.092419 B =14690.970015 C =14947.398122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.149 4.149 4 C 0.080 3.920 5 H 0.103 0.897 6 F -0.188 7.188 7 C 0.498 3.502 8 O -0.521 6.521 9 N -0.603 5.603 10 C 0.110 3.890 11 C -0.124 4.124 12 C 0.089 3.911 13 N -0.664 5.664 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.137 4.137 27 C 0.104 3.896 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.351 0.649 41 H 0.043 0.957 42 H 0.085 0.915 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.625 22.220 -15.601 27.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.206 4.206 4 C 0.041 3.959 5 H 0.120 0.880 6 F -0.169 7.169 7 C 0.283 3.717 8 O -0.397 6.397 9 N -0.337 5.337 10 C -0.012 4.012 11 C -0.162 4.162 12 C -0.022 4.022 13 N -0.297 5.297 14 C -0.081 4.081 15 C 0.225 3.775 16 O -0.467 6.467 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.176 4.176 27 C -0.019 4.019 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.171 0.829 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.105 0.895 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.576 21.476 -16.295 27.081 hybrid contribution -0.785 -0.301 1.227 1.488 sum -3.360 21.174 -15.068 26.205 Atomic orbital electron populations 1.21804 0.93517 1.02524 1.02716 1.21607 0.97249 0.97145 0.97320 1.21830 1.01994 0.94267 1.02493 1.21850 0.77760 0.94034 1.02247 0.87954 1.92889 1.29298 1.96905 1.97775 1.20885 0.77903 0.89158 0.83752 1.90722 1.52898 1.65671 1.30371 1.48199 1.61082 1.15789 1.08592 1.21748 0.97549 0.80503 1.01406 1.21943 1.02371 0.98838 0.93090 1.21477 0.96243 0.91488 0.92963 1.60063 1.38304 1.15226 1.16137 1.21718 0.93712 0.94612 0.98088 1.19810 0.87832 0.84133 0.85691 1.90524 1.18518 1.71590 1.66102 1.41861 1.15600 1.27000 1.35542 1.19655 0.99839 1.09122 1.14356 0.87973 1.25262 0.95778 0.97853 0.99036 1.69600 1.10758 1.30472 1.43500 0.85911 0.78764 0.79050 0.80457 1.19923 1.20972 1.19873 1.22104 1.01537 0.95080 0.98870 1.21893 1.01640 0.95642 0.82703 0.92184 0.91346 0.92242 0.88686 0.91690 0.91639 0.92274 0.91150 0.88653 0.90516 0.90263 0.93755 0.82916 0.93893 0.89662 0.77473 0.91813 0.90054 0.90172 0.89548 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.00 37.16 0.33 -0.56 16 2 C -0.11 -0.84 2.59 -90.62 -0.23 -1.07 16 3 C -0.15 -0.84 9.07 37.16 0.34 -0.51 16 4 C 0.08 0.68 2.76 -27.88 -0.08 0.60 16 5 H 0.10 0.57 5.74 -51.93 -0.30 0.28 16 6 F -0.19 -2.02 16.32 2.25 0.04 -1.99 16 7 C 0.50 5.46 6.00 -10.98 -0.07 5.40 16 8 O -0.52 -7.56 15.81 5.55 0.09 -7.47 16 9 N -0.60 -5.71 2.97 -172.77 -0.51 -6.22 16 10 C 0.11 1.09 6.44 -3.71 -0.02 1.06 16 11 C -0.12 -1.41 5.59 -26.61 -0.15 -1.55 16 12 C 0.09 0.99 2.46 -67.68 -0.17 0.83 16 13 N -0.66 -10.22 5.93 -107.96 -0.64 -10.86 16 14 C 0.05 0.87 5.96 -4.98 -0.03 0.85 16 15 C 0.44 10.28 7.82 -10.98 -0.09 10.19 16 16 O -0.58 -15.78 15.78 5.55 0.09 -15.69 16 17 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 18 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 22 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 C -0.14 -1.24 5.36 -26.61 -0.14 -1.38 16 27 C 0.10 0.73 6.17 -3.71 -0.02 0.71 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.44 7.36 -51.93 -0.38 0.06 16 31 H 0.09 0.87 7.75 -51.93 -0.40 0.46 16 32 H 0.06 0.42 7.61 -51.93 -0.40 0.02 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 1.06 7.00 -51.93 -0.36 0.70 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.08 0.92 7.42 -51.93 -0.39 0.53 16 39 H 0.04 0.46 7.80 -51.93 -0.40 0.06 16 40 H 0.35 5.52 8.03 -39.29 -0.32 5.21 16 41 H 0.04 0.65 8.05 -51.93 -0.42 0.24 16 42 H 0.09 1.35 7.41 -51.93 -0.38 0.97 16 43 H 0.39 9.41 7.90 -40.82 -0.32 9.08 16 44 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.08 0.62 8.10 -51.92 -0.42 0.20 16 47 H 0.09 0.47 5.46 -51.93 -0.28 0.18 16 48 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 LS Contribution 386.67 15.07 5.83 5.83 Total: -1.00 -33.46 386.67 -7.71 -41.17 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -7.67 Total: 10.61 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -0.57 Total: 6.57 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.49 Total: -55.02 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: 0.18 Total: -23.16 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.46 -7.71 -41.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202047113.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.602 kcal (2) G-P(sol) polarization free energy of solvation -33.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds