Wall clock time and date at job start Tue Mar 31 2020 05:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46893 * 2 1 4 4 C 1.52997 * 109.47107 * 120.00335 * 2 1 3 5 5 H 1.09002 * 109.46917 * 304.52688 * 4 2 1 6 6 F 1.39904 * 109.47227 * 184.52736 * 4 2 1 7 7 C 1.50704 * 109.47265 * 64.52492 * 4 2 1 8 8 O 1.21285 * 119.99784 * 43.77352 * 7 4 2 9 9 N 1.34779 * 120.00048 * 223.77070 * 7 4 2 10 10 C 1.46927 * 120.62755 * 173.98797 * 9 7 4 11 11 C 1.53196 * 108.77344 * 126.66730 * 10 9 7 12 12 C 1.53036 * 109.31253 * 54.63126 * 11 10 9 13 13 N 1.46900 * 109.45933 * 178.61050 * 12 11 10 14 14 C 1.46894 * 111.00201 * 275.07139 * 13 12 11 15 15 C 1.50702 * 109.47083 * 179.97438 * 14 13 12 16 16 O 1.21288 * 119.99926 * 359.97438 * 15 14 13 17 17 N 1.34784 * 119.99943 * 179.97438 * 15 14 13 18 18 C 1.37100 * 119.99817 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99711 * 0.02562 * 18 17 15 20 20 C 1.38942 * 119.99680 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00485 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99929 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47122 * 60.00156 * 22 20 18 24 24 H 1.48496 * 109.47337 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47142 * 300.00081 * 22 20 18 26 26 C 1.53035 * 109.53930 * 298.63474 * 12 11 10 27 27 C 1.46919 * 120.62772 * 354.26425 * 9 7 4 28 28 H 1.09000 * 109.47020 * 299.99590 * 1 2 3 29 29 H 1.09000 * 109.47496 * 59.99814 * 1 2 3 30 30 H 1.09001 * 109.47146 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47020 * 240.00410 * 2 1 3 32 32 H 1.09007 * 109.46904 * 177.34307 * 3 2 1 33 33 H 1.08995 * 109.47354 * 297.34474 * 3 2 1 34 34 H 1.09007 * 109.47244 * 57.34777 * 3 2 1 35 35 H 1.08999 * 109.58141 * 246.45424 * 10 9 7 36 36 H 1.09002 * 109.58759 * 6.87764 * 10 9 7 37 37 H 1.08997 * 109.49517 * 294.67746 * 11 10 9 38 38 H 1.09003 * 109.49444 * 174.58467 * 11 10 9 39 39 H 1.09001 * 109.46083 * 58.65502 * 12 11 10 40 40 H 1.00902 * 110.99869 * 151.11405 * 13 12 11 41 41 H 1.09000 * 109.47305 * 299.99612 * 14 13 12 42 42 H 1.08998 * 109.47276 * 60.00097 * 14 13 12 43 43 H 0.96999 * 119.99760 * 0.02562 * 17 15 14 44 44 H 0.96996 * 120.00450 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.49887 * 301.41010 * 26 12 11 46 46 H 1.09008 * 109.52471 * 181.33189 * 26 12 11 47 47 H 1.08992 * 109.59180 * 353.12136 * 27 9 7 48 48 H 1.09011 * 109.58428 * 113.40797 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6119 -0.2565 2.1373 6 9 3.4351 -0.6318 1.3025 7 6 1.6313 -2.1708 1.1944 8 8 1.7444 -2.7941 0.1601 9 7 1.1401 -2.7746 2.2947 10 6 0.6155 -4.1453 2.2253 11 6 1.3141 -4.9951 3.2915 12 6 1.1495 -4.3275 4.6587 13 7 1.7897 -5.1567 5.6884 14 6 0.8779 -6.2075 6.1601 15 6 1.5682 -7.0362 7.2127 16 8 2.7077 -6.7772 7.5376 17 7 0.9192 -8.0651 7.7931 18 6 1.5470 -8.8186 8.7511 19 1 2.5614 -8.5875 9.0409 20 6 0.8778 -9.8790 9.3497 21 7 -0.3567 -10.1599 8.9974 22 14 1.7328 -10.9053 10.6555 23 1 2.1183 -10.0350 11.7953 24 1 0.8110 -11.9672 11.1326 25 1 2.9492 -11.5299 10.0761 26 6 1.8064 -2.9455 4.6358 27 6 1.1135 -2.0724 3.5849 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1290 1.4429 0.0476 33 1 1.7160 1.9424 -0.9128 34 1 1.6383 1.9699 0.8653 35 1 -0.4584 -4.1353 2.4117 36 1 0.8132 -4.5627 1.2380 37 1 2.3743 -5.0788 3.0527 38 1 0.8665 -5.9887 3.3154 39 1 0.0887 -4.2216 4.8857 40 1 2.1172 -4.5905 6.4567 41 1 -0.0151 -5.7496 6.5856 42 1 0.5954 -6.8460 5.3231 43 1 0.0080 -8.2724 7.5330 44 1 -0.8237 -10.9003 9.4150 45 1 2.8620 -3.0485 4.3845 46 1 1.7097 -2.4799 5.6167 47 1 1.6397 -1.1222 3.4948 48 1 0.0801 -1.8912 3.8811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202047113.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:42 Heat of formation + Delta-G solvation = -151.844994 kcal Electronic energy + Delta-G solvation = -28450.381152 eV Core-core repulsion = 24260.174325 eV Total energy + Delta-G solvation = -4190.206827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.190 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -49.00688 -41.35633 -40.19659 -38.96867 -36.51400 -36.40083 -35.78947 -33.30311 -32.61449 -32.22646 -29.03686 -28.21234 -27.93512 -26.27518 -24.64783 -24.25412 -22.31844 -21.21848 -21.09721 -20.19325 -19.88265 -18.98389 -17.84805 -17.58327 -17.35288 -16.87252 -16.50240 -16.44320 -16.15029 -15.87184 -15.60274 -15.52627 -15.26334 -15.21740 -14.85576 -14.33834 -14.18329 -14.00808 -13.83404 -13.63799 -13.52053 -13.34826 -13.28115 -13.18958 -13.02989 -12.90055 -12.65354 -12.43643 -12.29733 -12.12852 -12.09230 -12.03192 -11.74895 -11.70015 -11.50599 -11.43599 -10.79464 -10.34478 -10.02091 -9.83847 -9.31992 -8.47011 -5.95823 1.23932 1.39394 1.41544 1.52271 1.73175 2.05104 2.28743 2.87841 3.09812 3.20262 3.32548 3.46093 3.48495 3.70784 3.80830 3.87191 4.02341 4.14953 4.17603 4.29714 4.31715 4.41775 4.43861 4.49514 4.51487 4.58096 4.60721 4.68340 4.75091 4.77436 4.79789 4.87402 4.94368 4.97982 5.14719 5.15486 5.28882 5.30873 5.35378 5.40433 5.41244 5.91118 6.13027 6.16398 6.43873 6.59913 6.86597 7.12219 7.56020 8.11505 8.70003 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.037470 B = 0.001905 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.092419 B =14690.970015 C =14947.398122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C -0.145 4.145 4 C 0.079 3.921 5 H 0.141 0.859 6 F -0.203 7.203 7 C 0.491 3.509 8 O -0.568 6.568 9 N -0.600 5.600 10 C 0.115 3.885 11 C -0.119 4.119 12 C 0.090 3.910 13 N -0.683 5.683 14 C 0.067 3.933 15 C 0.436 3.564 16 O -0.625 6.625 17 N -0.573 5.573 18 C -0.335 4.335 19 H 0.078 0.922 20 C -0.013 4.013 21 N -0.919 5.919 22 Si 0.992 3.008 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.274 1.274 26 C -0.134 4.134 27 C 0.103 3.897 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.348 0.652 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.058 0.942 46 H 0.099 0.901 47 H 0.108 0.892 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.405 24.041 -14.924 28.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 C -0.202 4.202 4 C 0.040 3.960 5 H 0.158 0.842 6 F -0.184 7.184 7 C 0.278 3.722 8 O -0.447 6.447 9 N -0.333 5.333 10 C -0.008 4.008 11 C -0.158 4.158 12 C -0.019 4.019 13 N -0.317 5.317 14 C -0.065 4.065 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.210 5.210 18 C -0.465 4.465 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.560 5.560 22 Si 0.816 3.184 23 H -0.196 1.196 24 H -0.194 1.194 25 H -0.199 1.199 26 C -0.172 4.172 27 C -0.018 4.018 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.167 0.833 41 H 0.089 0.911 42 H 0.118 0.882 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.117 0.883 47 H 0.126 0.874 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.386 23.315 -15.613 28.401 hybrid contribution -0.207 -0.867 0.986 1.329 sum -4.593 22.448 -14.627 27.184 Atomic orbital electron populations 1.21784 0.92211 1.01810 1.04289 1.21607 0.98303 0.97737 0.95684 1.21817 1.01291 0.93189 1.03898 1.22106 0.76922 0.92518 1.04428 0.84221 1.92858 1.30794 1.96837 1.97927 1.21418 0.77256 0.90169 0.83402 1.90699 1.54851 1.66934 1.32187 1.48328 1.60078 1.15596 1.09269 1.21669 0.98751 0.80612 0.99758 1.21877 1.00668 0.99269 0.94025 1.21577 0.97405 0.91878 0.91046 1.60029 1.39053 1.15907 1.16669 1.21560 0.93964 0.94562 0.96397 1.20948 0.87403 0.83532 0.85746 1.90492 1.20597 1.72539 1.67522 1.41933 1.15841 1.27587 1.35658 1.19623 0.99520 1.10950 1.16401 0.90408 1.26027 0.96412 0.98265 1.00535 1.69658 1.11445 1.30819 1.44078 0.84999 0.77863 0.77666 0.77871 1.19594 1.19428 1.19941 1.22078 1.00217 0.94262 1.00650 1.22145 1.03617 0.95554 0.80519 0.89857 0.90564 0.94012 0.91489 0.92824 0.90739 0.90324 0.88509 0.90561 0.93458 0.90644 0.91449 0.83263 0.91058 0.88249 0.76933 0.91274 0.92305 0.88266 0.87402 0.87382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.00 71.98 0.65 -0.78 16 2 C -0.11 -1.55 2.59 -10.80 -0.03 -1.58 16 3 C -0.14 -1.36 9.07 71.98 0.65 -0.71 16 4 C 0.08 1.21 2.76 29.85 0.08 1.29 16 5 H 0.14 1.04 5.74 -2.39 -0.01 1.02 16 6 F -0.20 -4.25 16.32 44.97 0.73 -3.51 16 7 C 0.49 10.48 6.00 87.66 0.53 11.01 16 8 O -0.57 -17.09 15.81 -3.05 -0.05 -17.14 16 9 N -0.60 -10.31 2.97 -818.89 -2.43 -12.74 16 10 C 0.11 2.13 6.44 86.36 0.56 2.68 16 11 C -0.12 -2.64 5.59 30.67 0.17 -2.46 16 12 C 0.09 1.83 2.46 44.94 0.11 1.94 16 13 N -0.68 -20.26 5.93 -495.47 -2.94 -23.20 16 14 C 0.07 2.20 5.96 85.56 0.51 2.71 16 15 C 0.44 20.50 7.82 87.66 0.69 21.19 16 16 O -0.62 -34.59 15.78 -3.05 -0.05 -34.64 16 17 N -0.57 -29.17 5.29 -306.98 -1.62 -30.80 16 18 C -0.34 -19.04 9.68 84.04 0.81 -18.22 16 19 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 20 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 21 N -0.92 -49.27 13.05 21.66 0.28 -48.99 16 22 Si 0.99 42.86 29.55 68.60 2.03 44.89 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 26 C -0.13 -2.08 5.36 30.67 0.16 -1.91 16 27 C 0.10 1.08 6.17 86.36 0.53 1.61 16 28 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.04 0.57 7.36 -2.39 -0.02 0.55 16 31 H 0.07 1.28 7.75 -2.39 -0.02 1.26 16 32 H 0.05 0.63 7.61 -2.38 -0.02 0.61 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 35 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.74 7.00 -2.39 -0.02 1.72 16 37 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.70 7.42 -2.39 -0.02 1.68 16 39 H 0.07 1.12 7.80 -2.39 -0.02 1.10 16 40 H 0.35 10.63 8.03 -89.69 -0.72 9.91 16 41 H 0.07 1.96 8.05 -2.39 -0.02 1.94 16 42 H 0.10 2.99 7.41 -2.39 -0.02 2.97 16 43 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 44 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 45 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.10 1.21 8.10 -2.38 -0.02 1.19 16 47 H 0.11 0.70 5.46 -2.39 -0.01 0.68 16 48 H 0.11 0.56 8.14 -2.38 -0.02 0.55 16 Total: -1.00 -75.87 386.67 1.38 -74.50 By element: Atomic # 1 Polarization: 35.53 SS G_CDS: -0.47 Total: 35.07 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: 5.89 Total: 16.57 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -6.71 Total: -115.73 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -0.10 Total: -51.78 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.73 Total: -3.51 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -75.87 1.38 -74.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202047113.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.346 kcal (2) G-P(sol) polarization free energy of solvation -75.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds