Wall clock time and date at job start Tue Mar 31 2020 04:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00032 * 2 1 4 4 C 1.52998 * 109.46906 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.47204 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99884 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00171 * 179.97438 * 5 4 3 8 8 C 1.46495 * 120.00205 * 179.97438 * 7 5 4 9 9 H 1.09011 * 110.27115 * 35.63579 * 8 7 5 10 10 C 1.53991 * 110.30984 * 273.54907 * 8 7 5 11 11 N 1.47905 * 107.22505 * 242.20865 * 10 8 7 12 12 C 1.46897 * 111.00050 * 214.25344 * 11 10 8 13 13 C 1.50694 * 109.47194 * 169.99666 * 12 11 10 14 14 O 1.21297 * 120.00284 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00402 * 179.97438 * 13 12 11 16 16 C 1.37094 * 120.00292 * 180.02562 * 15 13 12 17 17 H 1.07992 * 119.99974 * 0.02562 * 16 15 13 18 18 C 1.38952 * 119.99684 * 180.02562 * 16 15 13 19 19 N 1.31411 * 120.00312 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99566 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47171 * 60.00435 * 20 18 16 22 22 H 1.48503 * 109.46899 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47565 * 299.99939 * 20 18 16 24 24 C 1.48813 * 105.67450 * 334.90354 * 11 10 8 25 25 C 1.54594 * 110.31120 * 157.82737 * 8 7 5 26 26 H 1.08999 * 110.72080 * 22.51773 * 25 8 7 27 27 O 1.42905 * 110.72510 * 259.23364 * 25 8 7 28 28 C 1.42897 * 113.99820 * 150.00274 * 27 25 8 29 29 H 1.08997 * 109.47405 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47330 * 300.00322 * 1 2 3 31 31 H 1.09003 * 109.46772 * 60.00327 * 1 2 3 32 32 H 1.08994 * 109.47440 * 59.99712 * 3 2 1 33 33 H 1.09001 * 109.46826 * 299.99487 * 3 2 1 34 34 H 1.09001 * 109.47434 * 60.00059 * 4 3 2 35 35 H 1.09001 * 109.47076 * 299.99477 * 4 3 2 36 36 H 0.97003 * 119.99879 * 359.97438 * 7 5 4 37 37 H 1.09002 * 109.91707 * 1.65925 * 10 8 7 38 38 H 1.09002 * 109.91668 * 122.75716 * 10 8 7 39 39 H 1.09000 * 109.47143 * 290.00333 * 12 11 10 40 40 H 1.09011 * 109.46966 * 49.99945 * 12 11 10 41 41 H 0.97004 * 119.99442 * 0.02562 * 15 13 12 42 42 H 0.96997 * 119.99965 * 179.97438 * 19 18 16 43 43 H 1.08998 * 110.51915 * 280.54171 * 24 11 10 44 44 H 1.09004 * 110.69711 * 157.49494 * 24 11 10 45 45 H 1.09001 * 109.47255 * 59.99383 * 28 27 25 46 46 H 1.08998 * 109.47183 * 180.02562 * 28 27 25 47 47 H 1.09010 * 109.47067 * 299.99939 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 6 4.1485 2.5613 0.0000 6 8 3.4356 3.5424 -0.0004 7 7 5.4889 2.7021 0.0009 8 6 6.0848 4.0404 -0.0002 9 1 5.4787 4.7242 0.5942 10 6 6.2217 4.5632 -1.4422 11 7 7.6643 4.7632 -1.7004 12 6 7.8861 5.9153 -2.5843 13 6 9.3572 6.2389 -2.6282 14 8 10.1436 5.5754 -1.9859 15 7 9.7993 7.2656 -3.3812 16 6 11.1377 7.5597 -3.4215 17 1 11.8379 6.9684 -2.8503 18 6 11.5933 8.6186 -4.1974 19 7 10.7412 9.3384 -4.8921 20 14 13.4171 9.0187 -4.2529 21 1 14.1657 7.8458 -4.7716 22 1 13.6412 10.1840 -5.1458 23 1 13.8942 9.3450 -2.8850 24 6 8.2851 4.9820 -0.3657 25 6 7.5291 3.9851 0.5482 26 1 7.9415 2.9811 0.4481 27 8 7.5699 4.4166 1.9099 28 6 8.6051 3.8056 2.6825 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.8574 0.6435 -0.8891 35 1 3.8567 0.6439 0.8909 36 1 6.0590 1.9173 0.0024 37 1 5.8171 3.8322 -2.1422 38 1 5.6912 5.5097 -1.5459 39 1 7.5366 5.6754 -3.5885 40 1 7.3359 6.7762 -2.2042 41 1 9.1703 7.7965 -3.8946 42 1 11.0592 10.0778 -5.4334 43 1 8.1240 6.0073 -0.0328 44 1 9.3494 4.7479 -0.3929 45 1 9.5740 4.0399 2.2416 46 1 8.5687 4.1852 3.7036 47 1 8.4619 2.7250 2.6917 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211743608.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:08 Heat of formation + Delta-G solvation = -146.242209 kcal Electronic energy + Delta-G solvation = -28351.636137 eV Core-core repulsion = 24149.299475 eV Total energy + Delta-G solvation = -4202.336662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -40.43985 -39.23255 -38.15805 -37.92147 -36.54997 -34.55775 -33.83798 -32.25896 -31.34396 -30.34179 -28.22505 -27.18596 -26.80363 -25.94636 -24.39299 -23.61382 -21.58209 -20.96492 -20.31496 -19.27986 -17.96894 -17.71412 -17.13156 -16.62448 -16.54627 -16.04191 -15.97053 -15.44169 -15.22330 -15.13398 -14.80078 -14.67554 -14.45589 -14.15133 -13.80463 -13.69113 -13.53220 -13.26938 -12.92161 -12.51853 -12.27118 -12.20046 -11.87360 -11.78473 -11.68825 -11.56934 -11.54468 -11.51328 -11.32509 -11.01708 -10.69876 -10.45277 -10.24714 -10.16711 -10.04295 -9.71676 -9.50348 -9.25694 -8.43811 -8.06910 -7.95375 -6.44667 -3.85830 2.39373 2.68527 3.17679 3.24075 3.27889 3.48521 3.62409 3.85465 4.08848 4.31922 4.39337 4.50072 4.66176 4.73064 4.81803 4.94407 4.99231 5.01457 5.04555 5.15675 5.18874 5.22261 5.30047 5.32937 5.37355 5.42154 5.43518 5.47244 5.62618 5.69648 5.78148 5.80580 5.88196 6.07686 6.21801 6.28870 6.51825 6.74502 6.93365 7.16215 7.18519 7.27129 7.52025 7.97369 8.01931 8.57498 9.14080 9.49872 10.00973 10.72774 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.020554 B = 0.002167 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.949181 B =12918.915400 C =13921.369251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.076 3.924 4 C -0.140 4.140 5 C 0.519 3.481 6 O -0.540 6.540 7 N -0.716 5.716 8 C 0.138 3.862 9 H 0.105 0.895 10 C 0.027 3.973 11 N -0.491 5.491 12 C 0.036 3.964 13 C 0.442 3.558 14 O -0.583 6.583 15 N -0.559 5.559 16 C -0.301 4.301 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.900 5.900 20 Si 0.932 3.068 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.274 1.274 24 C 0.023 3.977 25 C 0.076 3.924 26 H 0.081 0.919 27 O -0.379 6.379 28 C 0.031 3.969 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.402 0.598 37 H 0.084 0.916 38 H 0.055 0.945 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.393 0.607 42 H 0.273 0.727 43 H 0.050 0.950 44 H 0.124 0.876 45 H 0.048 0.952 46 H 0.085 0.915 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.218 -15.495 10.510 24.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C -0.001 4.001 4 C -0.180 4.180 5 C 0.306 3.694 6 O -0.417 6.417 7 N -0.368 5.368 8 C 0.032 3.968 9 H 0.123 0.877 10 C -0.103 4.103 11 N -0.217 5.217 12 C -0.095 4.095 13 C 0.227 3.773 14 O -0.469 6.469 15 N -0.195 5.195 16 C -0.430 4.430 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.541 5.541 20 Si 0.759 3.241 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.105 4.105 25 C 0.017 3.983 26 H 0.099 0.901 27 O -0.297 6.297 28 C -0.065 4.065 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.237 0.763 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.226 0.774 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.142 0.858 45 H 0.067 0.933 46 H 0.103 0.897 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -14.961 -15.517 10.619 24.028 hybrid contribution 0.408 1.046 -0.214 1.143 sum -14.552 -14.471 10.405 23.009 Atomic orbital electron populations 1.22737 0.80536 1.02749 1.00277 1.87794 1.20123 1.28051 1.95589 1.22162 0.91855 0.84200 1.01892 1.21473 0.95552 0.95143 1.05827 1.20394 0.82293 0.91089 0.75658 1.90731 1.60900 1.40764 1.49320 1.46029 1.06599 1.08920 1.75269 1.21871 0.93902 0.84583 0.96417 0.87658 1.23327 0.90486 1.01178 0.95284 1.64654 1.07690 1.38200 1.11136 1.22127 0.96761 0.91989 0.98647 1.19666 0.89061 0.83767 0.84783 1.90421 1.56836 1.52473 1.47134 1.41842 1.08962 1.27547 1.41171 1.19647 0.83352 1.13364 1.26684 0.87908 1.25279 1.00257 0.96125 0.96213 1.69603 1.34956 1.20002 1.29525 0.85908 0.82068 0.77915 0.78259 1.19869 1.20955 1.19910 1.23907 1.02313 0.97590 0.86655 1.23381 0.94048 0.98738 0.82179 0.90104 1.87897 1.53574 1.67318 1.20940 1.22814 0.90916 0.96839 0.95951 0.89533 0.93939 0.93871 0.92358 0.92251 0.87796 0.87972 0.76266 0.89773 0.92644 0.88931 0.92999 0.77388 0.91745 0.93117 0.85821 0.93286 0.89693 0.94162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.40 -3.63 10.70 -35.23 -0.38 -4.01 16 3 C 0.08 0.68 5.23 37.16 0.19 0.87 16 4 C -0.14 -1.08 6.07 -27.88 -0.17 -1.25 16 5 C 0.52 5.56 7.82 -10.98 -0.09 5.48 16 6 O -0.54 -7.85 15.68 5.56 0.09 -7.77 16 7 N -0.72 -7.09 5.03 -52.49 -0.26 -7.35 16 8 C 0.14 1.73 3.06 -66.58 -0.20 1.53 16 9 H 0.11 1.51 7.58 -51.92 -0.39 1.12 16 10 C 0.03 0.37 6.48 -2.75 -0.02 0.35 16 11 N -0.49 -8.11 5.27 -231.64 -1.22 -9.33 16 12 C 0.04 0.65 5.52 -4.98 -0.03 0.63 16 13 C 0.44 10.22 7.50 -10.99 -0.08 10.14 16 14 O -0.58 -15.00 13.11 5.54 0.07 -14.93 16 15 N -0.56 -14.02 5.29 -10.97 -0.06 -14.07 16 16 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 17 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 18 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 19 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 20 Si 0.93 20.85 29.55 -169.99 -5.02 15.82 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 C 0.02 0.39 5.04 -1.74 -0.01 0.38 16 25 C 0.08 0.99 3.26 -24.87 -0.08 0.91 16 26 H 0.08 0.93 7.43 -51.93 -0.39 0.54 16 27 O -0.38 -5.07 10.44 -35.23 -0.37 -5.44 16 28 C 0.03 0.32 10.85 101.05 1.10 1.42 16 29 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 33 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.40 2.94 8.35 -40.82 -0.34 2.59 16 37 H 0.08 1.11 7.92 -51.93 -0.41 0.70 16 38 H 0.06 0.77 7.57 -51.93 -0.39 0.38 16 39 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.05 0.87 7.81 -51.92 -0.41 0.46 16 41 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 42 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.05 0.91 8.02 -51.93 -0.42 0.49 16 44 H 0.12 2.40 6.00 -51.93 -0.31 2.09 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.04 0.34 8.12 -51.92 -0.42 -0.08 16 LS Contribution 389.94 15.07 5.88 5.88 Total: -1.00 -32.98 389.94 -6.60 -39.58 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -7.54 Total: 11.35 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: 1.49 Total: 13.87 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.82 Total: -54.36 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.59 Total: -32.14 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.98 -6.60 -39.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211743608.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.666 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds