Wall clock time and date at job start Tue Mar 31 2020 04:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42906 * 109.47263 * 2 1 4 4 C 1.42900 * 114.00252 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.46979 * 180.02562 * 4 3 2 6 6 O 1.21280 * 120.00003 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99820 * 180.02562 * 5 4 3 8 8 C 1.46504 * 119.99854 * 179.97438 * 7 5 4 9 9 H 1.08998 * 110.27056 * 32.91321 * 8 7 5 10 10 C 1.53994 * 110.31089 * 270.71390 * 8 7 5 11 11 N 1.47900 * 107.05898 * 242.30936 * 10 8 7 12 12 C 1.46896 * 111.00169 * 214.15491 * 11 10 8 13 13 C 1.50704 * 109.46969 * 300.98708 * 12 11 10 14 14 O 1.21283 * 119.99796 * 354.03429 * 13 12 11 15 15 N 1.34775 * 119.99630 * 174.03814 * 13 12 11 16 16 C 1.37099 * 119.99856 * 179.97438 * 15 13 12 17 17 H 1.08002 * 119.99713 * 0.02562 * 16 15 13 18 18 C 1.38946 * 119.99978 * 179.97438 * 16 15 13 19 19 N 1.31415 * 120.00398 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00061 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46936 * 59.99590 * 20 18 16 22 22 H 1.48497 * 109.47160 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46846 * 300.00261 * 20 18 16 24 24 C 1.48537 * 105.81705 * 334.67158 * 11 10 8 25 25 C 1.54593 * 110.30923 * 154.99592 * 8 7 5 26 26 H 1.09008 * 110.72389 * 22.51886 * 25 8 7 27 27 O 1.42897 * 110.72671 * 259.23523 * 25 8 7 28 28 C 1.42905 * 113.99961 * 149.99662 * 27 25 8 29 29 H 1.09005 * 109.46927 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47343 * 299.99389 * 1 2 3 31 31 H 1.08997 * 109.47246 * 60.00193 * 1 2 3 32 32 H 1.08998 * 109.47655 * 240.00191 * 2 1 3 33 33 H 1.09006 * 109.47682 * 120.00194 * 2 1 3 34 34 H 1.08992 * 109.47798 * 300.00868 * 4 3 2 35 35 H 1.09007 * 109.46681 * 60.00804 * 4 3 2 36 36 H 0.96996 * 120.00134 * 359.97438 * 7 5 4 37 37 H 1.08997 * 109.91331 * 1.66100 * 10 8 7 38 38 H 1.09002 * 109.91348 * 122.95633 * 10 8 7 39 39 H 1.09003 * 109.46620 * 60.98141 * 12 11 10 40 40 H 1.08998 * 109.47301 * 180.98178 * 12 11 10 41 41 H 0.96997 * 119.99998 * 359.97438 * 15 13 12 42 42 H 0.96997 * 119.99773 * 179.97438 * 19 18 16 43 43 H 1.09001 * 110.66651 * 280.76625 * 24 11 10 44 44 H 1.09001 * 110.66495 * 157.64516 * 24 11 10 45 45 H 1.08994 * 109.47397 * 299.99677 * 28 27 25 46 46 H 1.09000 * 109.46874 * 60.00142 * 28 27 25 47 47 H 1.09006 * 109.46667 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8193 2.9162 0.0012 6 8 2.9609 3.7729 0.0016 7 7 5.1209 3.2664 0.0013 8 6 5.4986 4.6819 0.0012 9 1 4.7665 5.2680 0.5568 10 6 5.6191 5.2029 -1.4428 11 7 7.0242 5.6216 -1.6372 12 6 7.1084 6.7830 -2.5327 13 6 6.4986 6.4345 -3.8660 14 8 6.1375 5.2983 -4.0892 15 7 6.3545 7.3853 -4.8103 16 6 5.8002 7.0681 -6.0234 17 1 5.4786 6.0565 -6.2222 18 6 5.6512 8.0485 -6.9967 19 7 6.0411 9.2798 -6.7543 20 14 4.8952 7.6165 -8.6495 21 1 3.5173 7.1022 -8.4442 22 1 4.8481 8.8297 -9.5045 23 1 5.7188 6.5742 -9.3132 24 6 7.5383 5.9544 -0.2839 25 6 6.9064 4.8616 0.6142 26 1 7.4757 3.9341 0.5514 27 8 6.8151 5.3099 1.9679 28 6 7.8962 4.8787 2.7971 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8333 0.9767 0.8906 35 1 3.8339 0.9766 -0.8893 36 1 5.8074 2.5812 0.0013 37 1 5.3675 4.4092 -2.1461 38 1 4.9545 6.0548 -1.5868 39 1 6.5668 7.6206 -2.0932 40 1 8.1536 7.0592 -2.6722 41 1 6.6430 8.2939 -4.6315 42 1 5.9374 9.9640 -7.4340 43 1 7.2028 6.9454 0.0221 44 1 8.6262 5.8910 -0.2594 45 1 7.9242 3.7894 2.8204 46 1 8.8358 5.2579 2.3954 47 1 7.7532 5.2605 3.8081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211801936.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:10 Heat of formation + Delta-G solvation = -143.778866 kcal Electronic energy + Delta-G solvation = -28636.982125 eV Core-core repulsion = 24434.752282 eV Total energy + Delta-G solvation = -4202.229843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.33102 -39.17465 -38.13067 -37.69294 -36.54723 -34.41890 -33.81424 -31.82807 -31.27637 -30.58814 -28.68095 -27.45815 -26.97316 -25.78671 -24.09993 -23.03559 -21.61610 -21.25179 -20.37571 -19.12148 -17.87344 -17.52660 -17.34811 -16.87619 -16.60787 -16.02322 -15.95672 -15.32475 -15.15400 -15.01030 -14.72455 -14.48451 -14.23975 -14.16704 -13.69304 -13.42225 -13.22552 -13.08168 -12.85859 -12.69365 -12.41467 -12.23469 -11.90118 -11.82925 -11.71791 -11.56696 -11.49216 -11.47171 -11.20499 -10.92723 -10.87024 -10.42336 -10.19932 -10.01829 -9.93625 -9.73310 -9.47013 -9.09096 -8.47532 -8.04938 -7.93060 -6.39768 -3.80557 2.57742 2.63499 3.22032 3.27543 3.31666 3.38781 3.78025 3.91837 4.11048 4.32336 4.38443 4.59230 4.67033 4.76063 4.83533 4.84601 4.97957 5.01154 5.02185 5.08404 5.09125 5.15084 5.26049 5.33966 5.40149 5.43972 5.46297 5.62857 5.65847 5.71010 5.81169 5.84088 5.89223 6.02347 6.25380 6.29170 6.57581 6.81490 6.86765 7.10265 7.14928 7.41455 7.56979 8.07303 8.19038 8.63027 9.19606 9.55558 10.07057 10.77933 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.008583 B = 0.003176 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3261.392914 B = 8813.159971 C =11710.907423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.364 6.364 4 C 0.046 3.954 5 C 0.515 3.485 6 O -0.514 6.514 7 N -0.717 5.717 8 C 0.137 3.863 9 H 0.106 0.894 10 C 0.039 3.961 11 N -0.489 5.489 12 C 0.036 3.964 13 C 0.442 3.558 14 O -0.579 6.579 15 N -0.563 5.563 16 C -0.299 4.299 17 H 0.102 0.898 18 C 0.023 3.977 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.274 1.274 24 C 0.015 3.985 25 C 0.080 3.920 26 H 0.083 0.917 27 O -0.377 6.377 28 C 0.031 3.969 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.400 0.600 37 H 0.106 0.894 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.093 0.907 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.058 0.942 44 H 0.087 0.913 45 H 0.041 0.959 46 H 0.044 0.956 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.776 -14.019 18.964 23.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.282 6.282 4 C -0.034 4.034 5 C 0.300 3.700 6 O -0.387 6.387 7 N -0.371 5.371 8 C 0.032 3.968 9 H 0.124 0.876 10 C -0.089 4.089 11 N -0.214 5.214 12 C -0.095 4.095 13 C 0.227 3.773 14 O -0.463 6.463 15 N -0.199 5.199 16 C -0.428 4.428 17 H 0.120 0.880 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.114 4.114 25 C 0.021 3.979 26 H 0.101 0.899 27 O -0.295 6.295 28 C -0.065 4.065 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.234 0.766 37 H 0.124 0.876 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.111 0.889 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.105 0.895 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.881 -14.117 18.507 23.293 hybrid contribution 0.269 0.445 -0.511 0.729 sum 1.150 -13.672 17.997 22.630 Atomic orbital electron populations 1.21731 0.93392 1.02181 1.03581 1.22548 0.96039 0.83368 1.00137 1.88041 1.18414 1.26333 1.95416 1.22164 0.84116 0.94531 1.02572 1.20214 0.82619 0.90624 0.76535 1.90756 1.49198 1.51668 1.47096 1.45826 1.07014 1.07989 1.76276 1.21933 0.95942 0.82174 0.96744 0.87593 1.23275 0.89152 1.02066 0.94439 1.64568 1.17689 1.32157 1.07002 1.22118 1.02066 0.91602 0.93760 1.19670 0.85410 0.86427 0.85782 1.90502 1.54485 1.20589 1.80716 1.41845 1.54508 1.10567 1.13011 1.19644 1.36347 0.97350 0.89491 0.87974 1.25258 0.97752 0.94836 1.00052 1.69604 1.47507 1.01437 1.35785 0.85921 0.79645 0.77625 0.81056 1.19876 1.20974 1.19893 1.23658 1.00729 0.97833 0.89225 1.23242 0.95549 0.97277 0.81802 0.89898 1.87953 1.46300 1.75428 1.19839 1.22812 0.89821 0.98800 0.95115 0.91013 0.91728 0.91526 0.93068 0.93308 0.90436 0.89976 0.76574 0.87572 0.92867 0.93078 0.88900 0.77468 0.91816 0.92371 0.89458 0.94014 0.93744 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.15 0.38 -0.84 16 2 C 0.06 0.49 6.66 37.15 0.25 0.73 16 3 O -0.36 -4.70 9.88 -55.14 -0.54 -5.25 16 4 C 0.05 0.48 6.42 36.00 0.23 0.71 16 5 C 0.52 7.28 7.91 -10.99 -0.09 7.19 16 6 O -0.51 -9.88 16.15 -14.35 -0.23 -10.11 16 7 N -0.72 -8.56 5.01 -52.49 -0.26 -8.82 16 8 C 0.14 1.92 3.11 -66.57 -0.21 1.71 16 9 H 0.11 1.68 7.49 -51.93 -0.39 1.30 16 10 C 0.04 0.69 5.18 -2.75 -0.01 0.67 16 11 N -0.49 -8.05 5.12 -231.89 -1.19 -9.24 16 12 C 0.04 0.65 5.30 -4.98 -0.03 0.63 16 13 C 0.44 10.54 7.39 -10.98 -0.08 10.45 16 14 O -0.58 -15.63 14.10 5.55 0.08 -15.55 16 15 N -0.56 -14.46 5.29 -10.96 -0.06 -14.52 16 16 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 17 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 18 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 19 N -0.90 -24.85 13.05 55.50 0.72 -24.13 16 20 Si 0.93 21.39 29.55 -169.99 -5.02 16.37 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 C 0.01 0.18 6.28 -1.90 -0.01 0.17 16 25 C 0.08 0.92 3.26 -24.88 -0.08 0.84 16 26 H 0.08 0.79 7.44 -51.92 -0.39 0.40 16 27 O -0.38 -4.28 10.44 -35.23 -0.37 -4.65 16 28 C 0.03 0.24 10.85 101.05 1.10 1.33 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.40 3.38 8.38 -40.82 -0.34 3.04 16 37 H 0.11 2.16 6.81 -51.93 -0.35 1.81 16 38 H 0.05 1.03 7.71 -51.93 -0.40 0.63 16 39 H 0.05 0.86 8.00 -51.93 -0.42 0.44 16 40 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 42 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.06 0.74 7.95 -51.93 -0.41 0.33 16 44 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.04 0.26 8.11 -51.93 -0.42 -0.16 16 46 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 392.55 15.07 5.92 5.92 Total: -1.00 -36.11 392.55 -7.35 -43.46 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -7.60 Total: 10.98 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: 1.21 Total: 15.53 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.78 Total: -56.70 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -1.07 Total: -35.56 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.11 -7.35 -43.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211801936.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.319 kcal (2) G-P(sol) polarization free energy of solvation -36.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds