Wall clock time and date at job start Tue Mar 31 2020 04:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00217 * 2 1 4 4 H 1.09001 * 109.46616 * 329.99634 * 3 2 1 5 5 C 1.53002 * 109.47123 * 89.99425 * 3 2 1 6 6 C 1.50694 * 109.47347 * 209.99718 * 3 2 1 7 7 O 1.21287 * 119.99834 * 0.02562 * 6 3 2 8 8 N 1.34775 * 120.00175 * 179.97438 * 6 3 2 9 9 C 1.46502 * 119.99869 * 180.02562 * 8 6 3 10 10 H 1.08993 * 110.28982 * 32.87591 * 9 8 6 11 11 C 1.54383 * 110.32107 * 270.63534 * 9 8 6 12 12 N 1.48561 * 104.59474 * 264.95662 * 11 9 8 13 13 C 1.46902 * 110.99915 * 200.96280 * 12 11 9 14 14 C 1.50699 * 109.47367 * 190.00482 * 13 12 11 15 15 O 1.21288 * 119.99409 * 359.97438 * 14 13 12 16 16 N 1.34770 * 120.00167 * 180.02562 * 14 13 12 17 17 C 1.37100 * 119.99895 * 179.97438 * 16 14 13 18 18 H 1.07994 * 120.00204 * 359.97438 * 17 16 14 19 19 C 1.38954 * 119.99561 * 179.97438 * 17 16 14 20 20 N 1.31404 * 120.00268 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99528 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47111 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.46873 * 120.00167 * 21 19 17 24 24 H 1.48500 * 109.47010 * 240.00213 * 21 19 17 25 25 C 1.48560 * 104.22423 * 320.51973 * 12 11 9 26 26 C 1.54263 * 110.32178 * 155.00153 * 9 8 6 27 27 H 1.09000 * 110.32220 * 359.90227 * 26 9 8 28 28 O 1.42899 * 110.32264 * 237.79013 * 26 9 8 29 29 C 1.42903 * 113.99629 * 150.00189 * 28 26 9 30 30 H 1.09007 * 109.46809 * 60.00438 * 1 2 3 31 31 H 1.08995 * 109.46992 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47575 * 300.00553 * 1 2 3 33 33 H 1.09002 * 109.47290 * 300.00323 * 5 3 2 34 34 H 1.09001 * 109.46863 * 60.00145 * 5 3 2 35 35 H 1.09001 * 109.46766 * 179.97438 * 5 3 2 36 36 H 0.96996 * 119.99959 * 0.02562 * 8 6 3 37 37 H 1.08991 * 110.41319 * 23.74266 * 11 9 8 38 38 H 1.09009 * 110.40596 * 146.06186 * 11 9 8 39 39 H 1.09005 * 109.46888 * 310.00551 * 13 12 11 40 40 H 1.08998 * 109.46828 * 69.99868 * 13 12 11 41 41 H 0.97003 * 120.00118 * 359.97438 * 16 14 13 42 42 H 0.97004 * 119.99782 * 179.97438 * 20 19 17 43 43 H 1.08997 * 110.40885 * 280.70417 * 25 12 11 44 44 H 1.08998 * 110.40874 * 158.26114 * 25 12 11 45 45 H 1.09002 * 109.47382 * 59.99956 * 29 28 26 46 46 H 1.09001 * 109.46938 * 299.99942 * 29 28 26 47 47 H 1.09004 * 109.46926 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2176 1.7714 1.4425 6 6 3.3387 1.2639 -0.7103 7 8 3.7473 0.2192 -1.1716 8 7 4.0723 2.3877 -0.8339 9 6 5.3635 2.3473 -1.5249 10 1 5.3401 1.6093 -2.3266 11 6 6.4958 2.0227 -0.5270 12 7 7.0334 3.3485 -0.1267 13 6 8.3951 3.2241 0.4103 14 6 8.8131 4.5334 1.0282 15 8 8.0517 5.4775 1.0215 16 7 10.0332 4.6556 1.5874 17 6 10.4136 5.8470 2.1491 18 1 9.7358 6.6877 2.1431 19 6 11.6714 5.9728 2.7261 20 7 12.4964 4.9500 2.7329 21 14 12.1900 7.5963 3.4908 22 1 11.0882 8.5824 3.3535 23 1 12.4936 7.3910 4.9298 24 1 13.4003 8.1059 2.7973 25 6 7.0273 4.1397 -1.3841 26 6 5.7131 3.7400 -2.0888 27 1 4.9233 4.4531 -1.8528 28 8 5.9099 3.6681 -3.5023 29 6 5.5711 4.8694 -4.1981 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.2568 1.8015 1.9563 34 1 2.8829 1.0775 1.9564 35 1 2.6614 2.7670 1.4424 36 1 3.7454 3.2232 -0.4653 37 1 6.0985 1.4959 0.3405 38 1 7.2698 1.4269 -1.0110 39 1 8.4165 2.4412 1.1685 40 1 9.0817 2.9673 -0.3964 41 1 10.6423 3.9006 1.5925 42 1 13.3747 5.0380 3.1354 43 1 7.8854 3.8770 -2.0027 44 1 7.0302 5.2067 -1.1618 45 1 6.1873 5.6892 -3.8289 46 1 4.5193 5.1017 -4.0312 47 1 5.7479 4.7334 -5.2651 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211957753.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:42 Heat of formation + Delta-G solvation = -142.793395 kcal Electronic energy + Delta-G solvation = -28902.330433 eV Core-core repulsion = 24700.143323 eV Total energy + Delta-G solvation = -4202.187110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.51333 -39.33882 -38.09183 -37.68610 -36.55634 -34.51043 -33.82082 -32.09632 -31.24984 -30.18875 -28.24381 -27.13165 -27.09364 -26.07002 -24.53229 -23.87981 -21.61382 -21.05661 -20.29892 -19.20306 -17.97394 -17.72043 -17.45315 -16.81010 -16.18484 -15.98155 -15.63886 -15.59170 -15.19238 -14.86674 -14.68055 -14.54679 -14.32031 -14.04323 -13.75494 -13.54432 -13.52147 -13.06121 -12.83598 -12.74416 -12.34761 -12.19170 -12.07438 -12.04152 -11.81902 -11.55320 -11.51733 -11.46995 -11.28436 -11.05854 -10.76023 -10.35412 -10.30322 -10.23198 -9.90643 -9.63630 -9.50946 -9.21734 -8.55789 -8.06834 -7.95824 -6.41896 -3.82743 2.42700 2.58767 3.15527 3.25991 3.32661 3.47504 3.74493 3.90524 4.06996 4.28369 4.34588 4.50704 4.53165 4.62241 4.69896 4.89120 4.95022 5.01923 5.09041 5.13641 5.23304 5.25146 5.26797 5.34692 5.37144 5.38880 5.42767 5.54071 5.65503 5.68538 5.80455 5.81587 5.85216 5.93934 6.19364 6.25577 6.30761 6.69156 6.83706 7.10444 7.12860 7.33150 7.54805 8.05871 8.06329 8.61530 9.17897 9.54581 10.06127 10.75976 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.014971 B = 0.002576 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.806915 B =10867.464496 C =11924.259532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.071 3.929 4 H 0.087 0.913 5 C -0.172 4.172 6 C 0.516 3.484 7 O -0.519 6.519 8 N -0.713 5.713 9 C 0.146 3.854 10 H 0.109 0.891 11 C 0.022 3.978 12 N -0.479 5.479 13 C 0.034 3.966 14 C 0.447 3.553 15 O -0.579 6.579 16 N -0.566 5.566 17 C -0.297 4.297 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.901 5.901 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.019 3.981 26 C 0.079 3.921 27 H 0.079 0.921 28 O -0.380 6.380 29 C 0.031 3.969 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.403 0.597 37 H 0.088 0.912 38 H 0.056 0.944 39 H 0.091 0.909 40 H 0.054 0.946 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.054 0.946 44 H 0.102 0.898 45 H 0.047 0.953 46 H 0.041 0.959 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.063 -5.464 -8.719 22.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.009 3.991 4 H 0.104 0.896 5 C -0.230 4.230 6 C 0.301 3.699 7 O -0.393 6.393 8 N -0.367 5.367 9 C 0.041 3.959 10 H 0.127 0.873 11 C -0.107 4.107 12 N -0.204 5.204 13 C -0.098 4.098 14 C 0.232 3.768 15 O -0.463 6.463 16 N -0.202 5.202 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.756 3.244 22 H -0.193 1.193 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.110 4.110 26 C 0.020 3.980 27 H 0.097 0.903 28 O -0.298 6.298 29 C -0.066 4.066 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.238 0.762 37 H 0.106 0.894 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.072 0.928 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.120 0.880 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.227 -5.697 -8.660 22.728 hybrid contribution 0.893 0.831 0.165 1.231 sum -19.334 -4.866 -8.495 21.671 Atomic orbital electron populations 1.22879 0.80634 1.03251 1.00003 1.88055 1.19632 1.25161 1.94931 1.21930 0.93363 0.86847 0.96932 0.89574 1.22258 1.03482 1.02501 0.94755 1.20372 0.85875 0.83889 0.79766 1.90733 1.71462 1.30035 1.47094 1.45897 1.20403 1.11544 1.58832 1.21639 0.82375 0.97427 0.94453 0.87290 1.23562 0.96288 0.92229 0.98609 1.65152 1.20807 1.09736 1.24661 1.22085 0.89276 0.98639 0.99812 1.19665 0.83334 0.89272 0.84536 1.90490 1.52779 1.40558 1.62474 1.41874 1.13304 1.14060 1.51010 1.19725 0.99454 0.90799 1.32718 0.87906 1.25265 0.95872 0.98982 0.97917 1.69619 1.08696 1.30493 1.45479 0.85809 0.78571 0.81491 0.78517 1.19261 1.20755 1.20790 1.23631 0.95990 1.01350 0.89982 1.23118 0.97756 0.96014 0.81122 0.90316 1.87917 1.87571 1.36192 1.18127 1.22824 0.99081 0.87313 0.97351 0.93885 0.89149 0.93781 0.91244 0.90826 0.90492 0.76181 0.89366 0.92571 0.89128 0.92839 0.77490 0.91926 0.92764 0.88023 0.93459 0.94044 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.82 101.05 1.09 1.29 16 2 O -0.36 -4.04 9.88 -55.14 -0.54 -4.59 16 3 C 0.07 0.66 3.14 -27.88 -0.09 0.57 16 4 H 0.09 0.56 7.79 -51.93 -0.40 0.16 16 5 C -0.17 -1.35 9.42 37.16 0.35 -1.00 16 6 C 0.52 6.34 7.23 -10.99 -0.08 6.26 16 7 O -0.52 -8.63 16.15 -14.36 -0.23 -8.87 16 8 N -0.71 -7.62 4.96 -52.46 -0.26 -7.88 16 9 C 0.15 1.83 3.22 -66.54 -0.21 1.62 16 10 H 0.11 1.51 7.40 -51.93 -0.38 1.13 16 11 C 0.02 0.31 6.17 -2.18 -0.01 0.29 16 12 N -0.48 -7.74 4.98 -231.40 -1.15 -8.89 16 13 C 0.03 0.60 5.32 -4.98 -0.03 0.57 16 14 C 0.45 10.39 7.63 -10.99 -0.08 10.30 16 15 O -0.58 -15.19 14.80 5.55 0.08 -15.11 16 16 N -0.57 -14.25 5.29 -10.97 -0.06 -14.30 16 17 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 18 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 19 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 20 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 21 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 C 0.02 0.29 5.66 -2.18 -0.01 0.28 16 26 C 0.08 0.97 3.31 -25.35 -0.08 0.89 16 27 H 0.08 0.85 7.34 -51.93 -0.38 0.47 16 28 O -0.38 -4.72 10.31 -35.23 -0.36 -5.09 16 29 C 0.03 0.29 10.85 101.05 1.10 1.38 16 30 H 0.04 0.25 8.09 -51.93 -0.42 -0.17 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.23 7.87 -51.93 -0.41 -0.18 16 33 H 0.07 0.43 7.87 -51.93 -0.41 0.02 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.52 7.56 -51.93 -0.39 0.13 16 36 H 0.40 3.42 7.78 -40.82 -0.32 3.10 16 37 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 38 H 0.06 0.75 8.00 -51.92 -0.42 0.34 16 39 H 0.09 1.48 8.08 -51.93 -0.42 1.06 16 40 H 0.05 0.88 7.77 -51.93 -0.40 0.48 16 41 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 42 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.05 0.84 7.69 -51.93 -0.40 0.45 16 44 H 0.10 1.76 7.24 -51.93 -0.38 1.39 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.04 0.32 8.10 -51.93 -0.42 -0.10 16 47 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 390.78 15.07 5.89 5.89 Total: -1.00 -34.63 390.78 -6.73 -41.36 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -7.49 Total: 10.80 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: 1.70 Total: 14.56 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.75 Total: -54.87 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -1.06 Total: -33.65 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.63 -6.73 -41.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211957753.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.432 kcal (2) G-P(sol) polarization free energy of solvation -34.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds