Wall clock time and date at job start Tue Mar 31 2020 04:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00217 * 2 1 4 4 H 1.09001 * 109.46616 * 329.99634 * 3 2 1 5 5 C 1.53002 * 109.47123 * 89.99425 * 3 2 1 6 6 C 1.50694 * 109.47347 * 209.99718 * 3 2 1 7 7 O 1.21287 * 119.99834 * 0.02562 * 6 3 2 8 8 N 1.34775 * 120.00175 * 179.97438 * 6 3 2 9 9 C 1.46502 * 119.99869 * 180.02562 * 8 6 3 10 10 H 1.08993 * 110.28982 * 32.87591 * 9 8 6 11 11 C 1.54383 * 110.32107 * 270.63534 * 9 8 6 12 12 N 1.48561 * 104.59474 * 264.95662 * 11 9 8 13 13 C 1.46902 * 110.99915 * 200.96280 * 12 11 9 14 14 C 1.50699 * 109.47367 * 190.00482 * 13 12 11 15 15 O 1.21288 * 119.99409 * 359.97438 * 14 13 12 16 16 N 1.34770 * 120.00167 * 180.02562 * 14 13 12 17 17 C 1.37100 * 119.99895 * 179.97438 * 16 14 13 18 18 H 1.07994 * 120.00204 * 359.97438 * 17 16 14 19 19 C 1.38954 * 119.99561 * 179.97438 * 17 16 14 20 20 N 1.31404 * 120.00268 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99528 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47111 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.46873 * 120.00167 * 21 19 17 24 24 H 1.48500 * 109.47010 * 240.00213 * 21 19 17 25 25 C 1.48560 * 104.22423 * 320.51973 * 12 11 9 26 26 C 1.54263 * 110.32178 * 155.00153 * 9 8 6 27 27 H 1.09000 * 110.32220 * 359.90227 * 26 9 8 28 28 O 1.42899 * 110.32264 * 237.79013 * 26 9 8 29 29 C 1.42903 * 113.99629 * 150.00189 * 28 26 9 30 30 H 1.09007 * 109.46809 * 60.00438 * 1 2 3 31 31 H 1.08995 * 109.46992 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47575 * 300.00553 * 1 2 3 33 33 H 1.09002 * 109.47290 * 300.00323 * 5 3 2 34 34 H 1.09001 * 109.46863 * 60.00145 * 5 3 2 35 35 H 1.09001 * 109.46766 * 179.97438 * 5 3 2 36 36 H 0.96996 * 119.99959 * 0.02562 * 8 6 3 37 37 H 1.08991 * 110.41319 * 23.74266 * 11 9 8 38 38 H 1.09009 * 110.40596 * 146.06186 * 11 9 8 39 39 H 1.09005 * 109.46888 * 310.00551 * 13 12 11 40 40 H 1.08998 * 109.46828 * 69.99868 * 13 12 11 41 41 H 0.97003 * 120.00118 * 359.97438 * 16 14 13 42 42 H 0.97004 * 119.99782 * 179.97438 * 20 19 17 43 43 H 1.08997 * 110.40885 * 280.70417 * 25 12 11 44 44 H 1.08998 * 110.40874 * 158.26114 * 25 12 11 45 45 H 1.09002 * 109.47382 * 59.99956 * 29 28 26 46 46 H 1.09001 * 109.46938 * 299.99942 * 29 28 26 47 47 H 1.09004 * 109.46926 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2176 1.7714 1.4425 6 6 3.3387 1.2639 -0.7103 7 8 3.7473 0.2192 -1.1716 8 7 4.0723 2.3877 -0.8339 9 6 5.3635 2.3473 -1.5249 10 1 5.3401 1.6093 -2.3266 11 6 6.4958 2.0227 -0.5270 12 7 7.0334 3.3485 -0.1267 13 6 8.3951 3.2241 0.4103 14 6 8.8131 4.5334 1.0282 15 8 8.0517 5.4775 1.0215 16 7 10.0332 4.6556 1.5874 17 6 10.4136 5.8470 2.1491 18 1 9.7358 6.6877 2.1431 19 6 11.6714 5.9728 2.7261 20 7 12.4964 4.9500 2.7329 21 14 12.1900 7.5963 3.4908 22 1 11.0882 8.5824 3.3535 23 1 12.4936 7.3910 4.9298 24 1 13.4003 8.1059 2.7973 25 6 7.0273 4.1397 -1.3841 26 6 5.7131 3.7400 -2.0888 27 1 4.9233 4.4531 -1.8528 28 8 5.9099 3.6681 -3.5023 29 6 5.5711 4.8694 -4.1981 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.2568 1.8015 1.9563 34 1 2.8829 1.0775 1.9564 35 1 2.6614 2.7670 1.4424 36 1 3.7454 3.2232 -0.4653 37 1 6.0985 1.4959 0.3405 38 1 7.2698 1.4269 -1.0110 39 1 8.4165 2.4412 1.1685 40 1 9.0817 2.9673 -0.3964 41 1 10.6423 3.9006 1.5925 42 1 13.3747 5.0380 3.1354 43 1 7.8854 3.8770 -2.0027 44 1 7.0302 5.2067 -1.1618 45 1 6.1873 5.6892 -3.8289 46 1 4.5193 5.1017 -4.0312 47 1 5.7479 4.7334 -5.2651 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211957753.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:41 Heat of formation + Delta-G solvation = -171.391597 kcal Electronic energy + Delta-G solvation = -28903.570544 eV Core-core repulsion = 24700.143323 eV Total energy + Delta-G solvation = -4203.427221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.53566 -40.49824 -39.67680 -38.49886 -37.71739 -35.98176 -35.44247 -33.30036 -32.88008 -31.30269 -29.36392 -28.35906 -27.67215 -27.21769 -26.04145 -24.88161 -22.81233 -22.06264 -21.32312 -20.96033 -19.88141 -18.69449 -18.35466 -17.83423 -17.61424 -17.04903 -16.67832 -16.60504 -16.47679 -16.12145 -15.88938 -15.77381 -15.56627 -15.27695 -15.08053 -14.96758 -14.42544 -14.16876 -13.85603 -13.77409 -13.53749 -13.34529 -13.31065 -13.17374 -12.94072 -12.78917 -12.74523 -12.61964 -12.39676 -12.38549 -12.10964 -12.09581 -11.86736 -11.47998 -11.07934 -10.81605 -10.50718 -10.40373 -10.14108 -9.99939 -9.49744 -8.45560 -5.94108 1.37126 1.42216 1.50332 1.56327 1.73284 2.06054 2.27666 2.54127 2.88047 3.06090 3.20362 3.30571 3.46194 3.55850 3.71859 3.88218 3.93439 4.04773 4.20904 4.24784 4.31300 4.37020 4.47610 4.47900 4.51382 4.54385 4.57039 4.62056 4.64711 4.69944 4.77082 4.82164 4.85115 4.88259 4.92781 5.22660 5.33140 5.42058 5.66745 5.73906 6.04373 6.06917 6.16200 6.48985 6.61046 7.13847 7.16199 7.57402 8.12357 8.72236 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.014971 B = 0.002576 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.806915 B =10867.464496 C =11924.259532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.397 6.397 3 C 0.073 3.927 4 H 0.120 0.880 5 C -0.168 4.168 6 C 0.513 3.487 7 O -0.569 6.569 8 N -0.700 5.700 9 C 0.153 3.847 10 H 0.098 0.902 11 C 0.027 3.973 12 N -0.489 5.489 13 C 0.044 3.956 14 C 0.447 3.553 15 O -0.611 6.611 16 N -0.577 5.577 17 C -0.328 4.328 18 H 0.081 0.919 19 C -0.016 4.016 20 N -0.923 5.923 21 Si 0.993 3.007 22 H -0.271 1.271 23 H -0.272 1.272 24 H -0.272 1.272 25 C 0.021 3.979 26 C 0.093 3.907 27 H 0.098 0.902 28 O -0.396 6.396 29 C 0.023 3.977 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.416 0.584 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.395 0.605 42 H 0.277 0.723 43 H 0.048 0.952 44 H 0.077 0.923 45 H 0.043 0.957 46 H 0.059 0.941 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.381 -4.915 -8.791 23.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C 0.013 3.987 4 H 0.137 0.863 5 C -0.225 4.225 6 C 0.300 3.700 7 O -0.447 6.447 8 N -0.354 5.354 9 C 0.047 3.953 10 H 0.116 0.884 11 C -0.102 4.102 12 N -0.214 5.214 13 C -0.088 4.088 14 C 0.234 3.766 15 O -0.496 6.496 16 N -0.214 5.214 17 C -0.458 4.458 18 H 0.099 0.901 19 C -0.215 4.215 20 N -0.564 5.564 21 Si 0.817 3.183 22 H -0.196 1.196 23 H -0.197 1.197 24 H -0.197 1.197 25 C -0.108 4.108 26 C 0.033 3.967 27 H 0.116 0.884 28 O -0.314 6.314 29 C -0.072 4.072 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.254 0.746 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.126 0.874 40 H 0.088 0.912 41 H 0.228 0.772 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.096 0.904 45 H 0.062 0.938 46 H 0.078 0.922 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -21.562 -5.136 -8.733 23.824 hybrid contribution 1.249 0.649 0.135 1.414 sum -20.313 -4.487 -8.598 22.510 Atomic orbital electron populations 1.23088 0.78613 1.04154 1.01488 1.88009 1.21968 1.26411 1.95158 1.22033 0.92029 0.87086 0.97595 0.86268 1.22247 1.04222 1.02360 0.93690 1.21038 0.86796 0.83194 0.78953 1.90707 1.72799 1.31826 1.49338 1.45785 1.19540 1.11968 1.58122 1.21445 0.82772 0.97222 0.93893 0.88401 1.23549 0.96799 0.90969 0.98878 1.65082 1.19686 1.11229 1.25438 1.21954 0.90639 0.95608 1.00570 1.20571 0.82221 0.90721 0.83102 1.90463 1.53488 1.42370 1.63325 1.41951 1.14175 1.13601 1.51706 1.19687 1.00006 0.91366 1.34702 0.90104 1.26057 0.95377 1.02313 0.97792 1.69685 1.09038 1.31975 1.45682 0.84865 0.78099 0.77358 0.77989 1.19581 1.19742 1.19746 1.23550 0.97613 0.99821 0.89820 1.22934 0.96494 0.96031 0.81202 0.88414 1.87903 1.87848 1.37737 1.17895 1.23042 1.00158 0.86133 0.97905 0.92644 0.88728 0.91944 0.89229 0.92967 0.89311 0.74616 0.89591 0.92046 0.87353 0.91188 0.77156 0.91393 0.93383 0.90442 0.93789 0.92220 0.88017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.82 113.37 1.23 1.49 16 2 O -0.40 -8.45 9.88 -129.94 -1.28 -9.73 16 3 C 0.07 1.23 3.14 29.85 0.09 1.32 16 4 H 0.12 1.17 7.79 -2.39 -0.02 1.16 16 5 C -0.17 -2.28 9.42 71.98 0.68 -1.60 16 6 C 0.51 12.12 7.23 87.66 0.63 12.75 16 7 O -0.57 -19.01 16.15 15.98 0.26 -18.75 16 8 N -0.70 -13.95 4.96 -438.29 -2.17 -16.12 16 9 C 0.15 3.67 3.22 45.89 0.15 3.82 16 10 H 0.10 2.67 7.40 -2.39 -0.02 2.65 16 11 C 0.03 0.72 6.17 86.45 0.53 1.25 16 12 N -0.49 -15.52 4.98 -886.03 -4.41 -19.93 16 13 C 0.04 1.54 5.32 85.56 0.46 2.00 16 14 C 0.45 21.02 7.63 87.66 0.67 21.68 16 15 O -0.61 -32.66 14.80 -3.05 -0.05 -32.70 16 16 N -0.58 -29.54 5.29 -307.00 -1.62 -31.16 16 17 C -0.33 -18.47 9.68 84.04 0.81 -17.66 16 18 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 19 C -0.02 -0.85 5.50 84.93 0.47 -0.39 16 20 N -0.92 -50.00 13.05 21.66 0.28 -49.72 16 21 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 25 C 0.02 0.62 5.66 86.45 0.49 1.11 16 26 C 0.09 2.16 3.31 31.49 0.10 2.27 16 27 H 0.10 1.90 7.34 -2.39 -0.02 1.88 16 28 O -0.40 -9.31 10.31 -148.98 -1.54 -10.85 16 29 C 0.02 0.40 10.85 113.37 1.23 1.63 16 30 H 0.05 0.50 8.09 -2.38 -0.02 0.48 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 0.49 7.87 -2.39 -0.02 0.47 16 33 H 0.09 0.87 7.87 -2.39 -0.02 0.85 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.09 0.98 7.56 -2.39 -0.02 0.96 16 36 H 0.42 6.12 7.78 -92.71 -0.72 5.40 16 37 H 0.09 2.36 8.05 -2.39 -0.02 2.34 16 38 H 0.06 1.59 8.00 -2.38 -0.02 1.57 16 39 H 0.11 3.43 8.08 -2.38 -0.02 3.41 16 40 H 0.07 2.25 7.77 -2.39 -0.02 2.23 16 41 H 0.39 19.40 7.90 -92.71 -0.73 18.67 16 42 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 43 H 0.05 1.49 7.69 -2.39 -0.02 1.47 16 44 H 0.08 2.72 7.24 -2.39 -0.02 2.71 16 45 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 47 H 0.10 1.38 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -76.10 390.78 -1.42 -77.52 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: -0.46 Total: 37.02 kcal Atomic # 6 Polarization: 22.14 SS G_CDS: 7.54 Total: 29.68 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -7.92 Total: -116.93 kcal Atomic # 8 Polarization: -69.43 SS G_CDS: -2.61 Total: -72.04 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -76.10 -1.42 -77.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211957753.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.869 kcal (2) G-P(sol) polarization free energy of solvation -76.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds