Wall clock time and date at job start Tue Mar 31 2020 04:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47025 * 2 1 4 4 C 1.42900 * 113.99791 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47237 * 330.00029 * 4 3 2 6 6 C 1.52992 * 109.47155 * 90.00355 * 4 3 2 7 7 C 1.50704 * 109.46865 * 210.00172 * 4 3 2 8 8 O 1.21279 * 120.00093 * 0.02562 * 7 4 3 9 9 N 1.34776 * 119.99847 * 179.97438 * 7 4 3 10 10 C 1.46504 * 119.99860 * 179.97438 * 9 7 4 11 11 H 1.09002 * 110.27292 * 34.30345 * 10 9 7 12 12 C 1.54000 * 110.31047 * 272.21219 * 10 9 7 13 13 N 1.47897 * 107.05672 * 239.76105 * 12 10 9 14 14 C 1.46906 * 110.99555 * 145.84575 * 13 12 10 15 15 C 1.50703 * 109.46769 * 169.99928 * 14 13 12 16 16 O 1.21288 * 120.00122 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99901 * 180.02562 * 15 14 13 18 18 C 1.37092 * 120.00286 * 179.97438 * 17 15 14 19 19 H 1.08005 * 120.00058 * 359.97438 * 18 17 15 20 20 C 1.38955 * 120.00352 * 179.97438 * 18 17 15 21 21 N 1.31406 * 119.99779 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46858 * 90.00100 * 22 20 18 24 24 H 1.48501 * 109.47012 * 209.99841 * 22 20 18 25 25 H 1.48495 * 109.47369 * 330.00261 * 22 20 18 26 26 C 1.48533 * 105.82381 * 25.32929 * 13 12 10 27 27 C 1.54598 * 110.30819 * 156.39529 * 10 9 7 28 28 H 1.09003 * 110.72246 * 215.41878 * 27 10 9 29 29 O 1.42904 * 110.72020 * 338.69450 * 27 10 9 30 30 H 1.08993 * 109.47104 * 59.99945 * 1 2 3 31 31 H 1.09003 * 109.46781 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47214 * 299.99394 * 1 2 3 33 33 H 1.09005 * 109.47027 * 240.00379 * 2 1 3 34 34 H 1.09003 * 109.46954 * 120.00593 * 2 1 3 35 35 H 1.09007 * 109.47220 * 179.97438 * 6 4 3 36 36 H 1.09000 * 109.47205 * 299.99657 * 6 4 3 37 37 H 1.09000 * 109.47249 * 60.00240 * 6 4 3 38 38 H 0.96996 * 120.00436 * 0.02562 * 9 7 4 39 39 H 1.09000 * 109.91521 * 359.11391 * 12 10 9 40 40 H 1.09002 * 109.91162 * 120.21071 * 12 10 9 41 41 H 1.08995 * 109.46892 * 289.99567 * 14 13 12 42 42 H 1.09001 * 109.47127 * 50.00138 * 14 13 12 43 43 H 0.96999 * 120.00175 * 359.97438 * 17 15 14 44 44 H 0.96998 * 120.00131 * 180.02562 * 21 20 18 45 45 H 1.09003 * 110.66452 * 79.22844 * 26 13 12 46 46 H 1.08995 * 110.66642 * 202.18742 * 26 13 12 47 47 H 0.96701 * 113.99338 * 179.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8635 0.6015 0.5129 6 6 3.9386 1.5006 -1.4432 7 6 3.8347 2.7263 0.7099 8 8 2.9862 3.4595 1.1717 9 7 5.1389 3.0432 0.8330 10 6 5.5315 4.2744 1.5232 11 1 4.8423 4.4852 2.3409 12 6 5.5644 5.4544 0.5342 13 7 6.9446 5.9857 0.5385 14 6 7.3238 6.4766 -0.7932 15 6 8.6272 7.2272 -0.6994 16 8 9.1851 7.3422 0.3713 17 7 9.1725 7.7714 -1.8053 18 6 10.3579 8.4546 -1.7200 19 1 10.8548 8.5572 -0.7665 20 6 10.9204 9.0153 -2.8603 21 7 10.3156 8.8910 -4.0203 22 14 12.5353 9.9469 -2.7438 23 1 13.6654 9.0060 -2.9506 24 1 12.5736 11.0034 -3.7867 25 1 12.6507 10.5717 -1.4017 26 6 7.8125 4.8550 0.9561 27 6 6.9770 4.1523 2.0577 28 1 7.0811 4.6715 3.0105 29 8 7.3551 2.7800 2.1841 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 5.0252 1.5871 -1.4437 36 1 3.6465 0.5848 -1.9571 37 1 3.5060 2.3593 -1.9567 38 1 5.8175 2.4566 0.4640 39 1 5.3028 5.1082 -0.4657 40 1 4.8650 6.2267 0.8544 41 1 7.4389 5.6320 -1.4725 42 1 6.5473 7.1425 -1.1696 43 1 8.7261 7.6797 -2.6616 44 1 10.7084 9.2821 -4.8163 45 1 7.9914 4.1784 0.1204 46 1 8.7556 5.2228 1.3602 47 1 8.2540 2.6487 2.5155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219242563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:37 Heat of formation + Delta-G solvation = -153.166906 kcal Electronic energy + Delta-G solvation = -28686.213773 eV Core-core repulsion = 24483.576834 eV Total energy + Delta-G solvation = -4202.636939 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.52037 -39.28026 -38.10105 -37.59115 -35.88313 -34.38727 -33.83769 -32.74253 -31.30056 -30.73948 -29.83123 -28.11782 -26.53507 -24.81140 -24.13270 -23.04589 -21.49968 -21.09858 -20.38269 -19.23474 -17.95114 -17.77796 -17.54807 -17.18149 -16.21881 -16.10288 -15.67211 -15.45210 -15.24654 -14.84875 -14.70907 -14.31525 -14.09099 -13.71186 -13.57250 -13.50611 -13.40019 -13.02810 -12.85043 -12.84511 -12.59206 -12.31455 -12.18927 -12.07770 -11.71987 -11.65204 -11.48192 -11.40447 -11.32992 -11.07914 -10.89922 -10.40961 -10.23886 -10.22612 -10.08293 -9.66629 -9.51505 -9.25297 -8.55004 -8.05268 -7.96962 -6.43406 -3.84309 2.44913 2.59610 3.16035 3.24986 3.30759 3.49591 3.79256 3.88312 4.10032 4.30353 4.40504 4.50561 4.55627 4.59585 4.63229 4.74818 4.87260 4.98709 5.05268 5.10413 5.13112 5.21123 5.24788 5.32649 5.36848 5.39437 5.55572 5.61151 5.73403 5.74971 5.79488 5.80102 5.87559 5.94668 6.16523 6.22472 6.31327 6.75633 6.98183 7.08941 7.36178 7.41980 7.53336 8.04016 8.09336 8.59717 9.16260 9.52453 10.04089 10.74352 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.021518 B = 0.002235 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.909496 B =12525.376899 C =13209.241412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.358 6.358 4 C 0.073 3.927 5 H 0.087 0.913 6 C -0.171 4.171 7 C 0.514 3.486 8 O -0.521 6.521 9 N -0.707 5.707 10 C 0.147 3.853 11 H 0.103 0.897 12 C 0.024 3.976 13 N -0.485 5.485 14 C 0.038 3.962 15 C 0.445 3.555 16 O -0.578 6.578 17 N -0.565 5.565 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.010 3.990 27 C 0.093 3.907 28 H 0.087 0.913 29 O -0.563 6.563 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.406 0.594 39 H 0.053 0.947 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.090 0.910 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.047 0.953 46 H 0.103 0.897 47 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.875 -19.517 5.713 24.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.011 3.989 5 H 0.104 0.896 6 C -0.229 4.229 7 C 0.299 3.701 8 O -0.396 6.396 9 N -0.362 5.362 10 C 0.041 3.959 11 H 0.121 0.879 12 C -0.105 4.105 13 N -0.210 5.210 14 C -0.094 4.094 15 C 0.230 3.770 16 O -0.462 6.462 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.118 4.118 27 C 0.033 3.967 28 H 0.104 0.896 29 O -0.368 6.368 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.242 0.758 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.109 0.891 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.122 0.878 47 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -13.757 -18.315 6.716 23.871 hybrid contribution 1.557 -0.594 -1.317 2.124 sum -12.200 -18.909 5.399 23.141 Atomic orbital electron populations 1.21727 0.93384 1.02204 1.03491 1.22594 0.96013 0.83537 1.00061 1.88060 1.18318 1.26312 1.94924 1.21849 0.83786 0.96534 0.96704 0.89560 1.22249 1.01731 1.03886 0.95050 1.20380 0.82633 0.87178 0.79913 1.90726 1.50125 1.51376 1.47336 1.45735 1.06919 1.24854 1.58658 1.21836 0.95013 0.83965 0.95080 0.87899 1.23418 0.92377 0.96198 0.98550 1.64448 1.00696 1.30195 1.25659 1.22083 0.98439 0.99315 0.89531 1.19667 0.87086 0.85007 0.85216 1.90497 1.64007 1.63562 1.28127 1.41859 1.21728 1.47963 1.08598 1.19688 0.97935 1.29011 0.96173 0.87918 1.25267 0.99819 0.98189 0.94726 1.69609 1.39873 1.45785 0.99043 0.85854 0.81278 0.78979 0.78156 1.20462 1.20919 1.19406 1.24002 0.98677 0.91742 0.97395 1.23058 0.92877 0.82161 0.98618 0.89557 1.86338 1.36850 1.24393 1.89257 0.91707 0.91033 0.91621 0.93196 0.93258 0.90884 0.91187 0.90929 0.75834 0.92873 0.89066 0.93173 0.89133 0.77518 0.91868 0.93433 0.87849 0.76601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.65 16 2 C 0.05 0.42 6.47 37.16 0.24 0.66 16 3 O -0.36 -4.08 9.52 -55.14 -0.52 -4.60 16 4 C 0.07 0.70 3.14 -27.88 -0.09 0.61 16 5 H 0.09 0.62 7.79 -51.93 -0.40 0.22 16 6 C -0.17 -1.31 9.42 37.15 0.35 -0.96 16 7 C 0.51 6.43 7.23 -10.98 -0.08 6.35 16 8 O -0.52 -8.72 16.17 -14.35 -0.23 -8.96 16 9 N -0.71 -7.68 4.53 -52.48 -0.24 -7.92 16 10 C 0.15 1.79 3.27 -66.57 -0.22 1.57 16 11 H 0.10 1.34 7.60 -51.93 -0.39 0.95 16 12 C 0.02 0.32 6.46 -2.75 -0.02 0.31 16 13 N -0.48 -7.82 4.91 -231.78 -1.14 -8.96 16 14 C 0.04 0.67 5.19 -4.97 -0.03 0.64 16 15 C 0.45 10.32 7.61 -10.98 -0.08 10.23 16 16 O -0.58 -15.22 14.64 5.55 0.08 -15.13 16 17 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 18 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 19 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 22 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 C 0.01 0.14 5.67 -1.81 -0.01 0.13 16 27 C 0.09 1.05 4.36 -24.79 -0.11 0.94 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 29 O -0.56 -5.20 12.08 -35.23 -0.43 -5.63 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.30 7.87 -51.93 -0.41 -0.11 16 34 H 0.05 0.33 8.09 -51.93 -0.42 -0.09 16 35 H 0.07 0.47 7.57 -51.93 -0.39 0.07 16 36 H 0.07 0.43 7.87 -51.93 -0.41 0.02 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.41 3.74 7.23 -40.82 -0.30 3.44 16 39 H 0.05 0.71 7.56 -51.93 -0.39 0.32 16 40 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.05 0.80 7.83 -51.93 -0.41 0.39 16 42 H 0.09 1.48 8.08 -51.93 -0.42 1.06 16 43 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 44 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.05 0.66 7.81 -51.93 -0.41 0.25 16 46 H 0.10 1.72 7.10 -51.93 -0.37 1.36 16 47 H 0.39 2.22 9.12 45.56 0.42 2.63 16 LS Contribution 389.06 15.07 5.86 5.86 Total: -1.00 -34.66 389.06 -7.54 -42.20 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -6.67 Total: 13.18 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 0.10 Total: 11.95 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.71 Total: -54.72 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -1.10 Total: -34.32 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.66 -7.54 -42.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219242563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.967 kcal (2) G-P(sol) polarization free energy of solvation -34.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds