Wall clock time and date at job start Tue Mar 31 2020 04:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47025 * 2 1 4 4 C 1.42900 * 113.99791 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47237 * 330.00029 * 4 3 2 6 6 C 1.52992 * 109.47155 * 90.00355 * 4 3 2 7 7 C 1.50704 * 109.46865 * 210.00172 * 4 3 2 8 8 O 1.21279 * 120.00093 * 0.02562 * 7 4 3 9 9 N 1.34776 * 119.99847 * 179.97438 * 7 4 3 10 10 C 1.46504 * 119.99860 * 179.97438 * 9 7 4 11 11 H 1.09002 * 110.27292 * 34.30345 * 10 9 7 12 12 C 1.54000 * 110.31047 * 272.21219 * 10 9 7 13 13 N 1.47897 * 107.05672 * 239.76105 * 12 10 9 14 14 C 1.46906 * 110.99555 * 145.84575 * 13 12 10 15 15 C 1.50703 * 109.46769 * 169.99928 * 14 13 12 16 16 O 1.21288 * 120.00122 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99901 * 180.02562 * 15 14 13 18 18 C 1.37092 * 120.00286 * 179.97438 * 17 15 14 19 19 H 1.08005 * 120.00058 * 359.97438 * 18 17 15 20 20 C 1.38955 * 120.00352 * 179.97438 * 18 17 15 21 21 N 1.31406 * 119.99779 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46858 * 90.00100 * 22 20 18 24 24 H 1.48501 * 109.47012 * 209.99841 * 22 20 18 25 25 H 1.48495 * 109.47369 * 330.00261 * 22 20 18 26 26 C 1.48533 * 105.82381 * 25.32929 * 13 12 10 27 27 C 1.54598 * 110.30819 * 156.39529 * 10 9 7 28 28 H 1.09003 * 110.72246 * 215.41878 * 27 10 9 29 29 O 1.42904 * 110.72020 * 338.69450 * 27 10 9 30 30 H 1.08993 * 109.47104 * 59.99945 * 1 2 3 31 31 H 1.09003 * 109.46781 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47214 * 299.99394 * 1 2 3 33 33 H 1.09005 * 109.47027 * 240.00379 * 2 1 3 34 34 H 1.09003 * 109.46954 * 120.00593 * 2 1 3 35 35 H 1.09007 * 109.47220 * 179.97438 * 6 4 3 36 36 H 1.09000 * 109.47205 * 299.99657 * 6 4 3 37 37 H 1.09000 * 109.47249 * 60.00240 * 6 4 3 38 38 H 0.96996 * 120.00436 * 0.02562 * 9 7 4 39 39 H 1.09000 * 109.91521 * 359.11391 * 12 10 9 40 40 H 1.09002 * 109.91162 * 120.21071 * 12 10 9 41 41 H 1.08995 * 109.46892 * 289.99567 * 14 13 12 42 42 H 1.09001 * 109.47127 * 50.00138 * 14 13 12 43 43 H 0.96999 * 120.00175 * 359.97438 * 17 15 14 44 44 H 0.96998 * 120.00131 * 180.02562 * 21 20 18 45 45 H 1.09003 * 110.66452 * 79.22844 * 26 13 12 46 46 H 1.08995 * 110.66642 * 202.18742 * 26 13 12 47 47 H 0.96701 * 113.99338 * 179.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8635 0.6015 0.5129 6 6 3.9386 1.5006 -1.4432 7 6 3.8347 2.7263 0.7099 8 8 2.9862 3.4595 1.1717 9 7 5.1389 3.0432 0.8330 10 6 5.5315 4.2744 1.5232 11 1 4.8423 4.4852 2.3409 12 6 5.5644 5.4544 0.5342 13 7 6.9446 5.9857 0.5385 14 6 7.3238 6.4766 -0.7932 15 6 8.6272 7.2272 -0.6994 16 8 9.1851 7.3422 0.3713 17 7 9.1725 7.7714 -1.8053 18 6 10.3579 8.4546 -1.7200 19 1 10.8548 8.5572 -0.7665 20 6 10.9204 9.0153 -2.8603 21 7 10.3156 8.8910 -4.0203 22 14 12.5353 9.9469 -2.7438 23 1 13.6654 9.0060 -2.9506 24 1 12.5736 11.0034 -3.7867 25 1 12.6507 10.5717 -1.4017 26 6 7.8125 4.8550 0.9561 27 6 6.9770 4.1523 2.0577 28 1 7.0811 4.6715 3.0105 29 8 7.3551 2.7800 2.1841 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 5.0252 1.5871 -1.4437 36 1 3.6465 0.5848 -1.9571 37 1 3.5060 2.3593 -1.9567 38 1 5.8175 2.4566 0.4640 39 1 5.3028 5.1082 -0.4657 40 1 4.8650 6.2267 0.8544 41 1 7.4389 5.6320 -1.4725 42 1 6.5473 7.1425 -1.1696 43 1 8.7261 7.6797 -2.6616 44 1 10.7084 9.2821 -4.8163 45 1 7.9914 4.1784 0.1204 46 1 8.7556 5.2228 1.3602 47 1 8.2540 2.6487 2.5155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219242563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:34 Heat of formation + Delta-G solvation = -182.796306 kcal Electronic energy + Delta-G solvation = -28687.498600 eV Core-core repulsion = 24483.576834 eV Total energy + Delta-G solvation = -4203.921766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -41.52475 -40.47358 -39.55176 -38.55451 -36.90840 -35.92372 -35.31524 -33.46201 -33.25256 -31.65180 -30.75464 -29.18644 -28.04425 -26.13732 -25.32096 -23.63025 -22.71563 -22.00558 -21.37097 -21.01379 -19.88859 -18.66982 -18.47536 -17.93595 -17.79434 -16.88608 -16.72040 -16.61082 -16.47329 -16.27654 -16.01262 -15.77409 -15.40730 -14.93607 -14.89723 -14.40611 -14.25816 -14.09360 -14.02386 -13.74390 -13.45575 -13.42549 -13.28106 -13.17191 -12.96102 -12.89092 -12.68977 -12.53463 -12.40871 -12.30012 -12.12790 -12.06717 -11.95853 -11.47853 -11.04069 -10.97967 -10.48699 -10.34085 -10.25264 -10.00528 -9.38658 -8.46089 -5.94642 1.38118 1.42150 1.51512 1.54820 1.76165 2.05146 2.27886 2.60381 2.94019 3.10438 3.20188 3.34984 3.49126 3.64768 3.71486 3.90779 4.00943 4.07713 4.16339 4.20066 4.27956 4.32844 4.33788 4.40187 4.48987 4.49085 4.58257 4.64608 4.76028 4.82881 4.85062 4.89116 4.98450 5.02152 5.18201 5.27268 5.32996 5.41536 5.75278 5.82992 6.04365 6.11973 6.52330 6.60576 6.76719 7.13325 7.19132 7.56585 8.11943 8.71343 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.021518 B = 0.002235 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.909496 B =12525.376899 C =13209.241412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.392 6.392 4 C 0.074 3.926 5 H 0.115 0.885 6 C -0.166 4.166 7 C 0.510 3.490 8 O -0.571 6.571 9 N -0.694 5.694 10 C 0.149 3.851 11 H 0.094 0.906 12 C 0.030 3.970 13 N -0.506 5.506 14 C 0.050 3.950 15 C 0.444 3.556 16 O -0.613 6.613 17 N -0.575 5.575 18 C -0.330 4.330 19 H 0.080 0.920 20 C -0.015 4.015 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.270 1.270 24 H -0.273 1.273 25 H -0.273 1.273 26 C 0.013 3.987 27 C 0.113 3.887 28 H 0.090 0.910 29 O -0.559 6.559 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.417 0.583 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.105 0.895 43 H 0.395 0.605 44 H 0.277 0.723 45 H 0.055 0.945 46 H 0.075 0.925 47 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.663 -21.422 5.183 25.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.311 6.311 4 C 0.013 3.987 5 H 0.132 0.868 6 C -0.224 4.224 7 C 0.297 3.703 8 O -0.449 6.449 9 N -0.348 5.348 10 C 0.043 3.957 11 H 0.113 0.887 12 C -0.098 4.098 13 N -0.231 5.231 14 C -0.081 4.081 15 C 0.231 3.769 16 O -0.498 6.498 17 N -0.212 5.212 18 C -0.460 4.460 19 H 0.098 0.902 20 C -0.214 4.214 21 N -0.562 5.562 22 Si 0.817 3.183 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.198 1.198 26 C -0.116 4.116 27 C 0.052 3.948 28 H 0.108 0.892 29 O -0.367 6.367 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.072 0.928 38 H 0.255 0.745 39 H 0.077 0.923 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.123 0.877 43 H 0.229 0.771 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.093 0.907 47 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -13.525 -20.264 6.170 25.132 hybrid contribution 1.466 -0.055 -1.105 1.837 sum -12.059 -20.319 5.066 24.164 Atomic orbital electron populations 1.21768 0.93231 1.03447 1.02394 1.22829 0.96270 0.82259 1.01514 1.88028 1.19337 1.28618 1.95154 1.21960 0.83463 0.95575 0.97669 0.86790 1.22239 1.02471 1.04069 0.93605 1.21046 0.82380 0.87734 0.79162 1.90702 1.51440 1.53195 1.49563 1.45628 1.06890 1.24339 1.57916 1.21692 0.95360 0.84095 0.94602 0.88748 1.23353 0.90633 0.96604 0.99259 1.64346 1.02234 1.31749 1.24779 1.21929 0.95410 0.99705 0.91090 1.20624 0.88254 0.83920 0.84064 1.90473 1.65458 1.64572 1.29339 1.41927 1.21506 1.48489 1.09317 1.19652 0.99485 1.31059 0.95803 0.90187 1.26043 1.02785 0.98457 0.94133 1.69672 1.41035 1.46054 0.99467 0.84924 0.77449 0.77934 0.78016 1.19529 1.19737 1.19813 1.23933 0.97701 0.91419 0.98501 1.22741 0.91464 0.82977 0.97580 0.89243 1.86308 1.38452 1.22644 1.89315 0.92423 0.88606 0.93093 0.91178 0.92206 0.89363 0.89251 0.92779 0.74518 0.92316 0.89569 0.90928 0.87715 0.77113 0.91354 0.92681 0.90652 0.74529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 71.98 0.74 -1.15 16 2 C 0.05 0.63 6.47 71.98 0.47 1.10 16 3 O -0.39 -8.52 9.52 -129.94 -1.24 -9.75 16 4 C 0.07 1.27 3.14 29.85 0.09 1.37 16 5 H 0.11 1.29 7.79 -2.39 -0.02 1.27 16 6 C -0.17 -2.13 9.42 71.98 0.68 -1.46 16 7 C 0.51 12.20 7.23 87.66 0.63 12.84 16 8 O -0.57 -19.21 16.17 16.01 0.26 -18.95 16 9 N -0.69 -13.82 4.53 -438.35 -1.98 -15.80 16 10 C 0.15 3.45 3.27 45.87 0.15 3.60 16 11 H 0.09 2.42 7.60 -2.39 -0.02 2.40 16 12 C 0.03 0.80 6.46 86.45 0.56 1.35 16 13 N -0.51 -15.98 4.91 -887.23 -4.35 -20.33 16 14 C 0.05 1.73 5.19 85.56 0.44 2.17 16 15 C 0.44 20.81 7.61 87.66 0.67 21.47 16 16 O -0.61 -33.00 14.64 -3.06 -0.04 -33.05 16 17 N -0.57 -29.19 5.29 -306.98 -1.62 -30.82 16 18 C -0.33 -18.55 9.68 84.04 0.81 -17.74 16 19 H 0.08 4.78 7.16 -2.91 -0.02 4.75 16 20 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 21 N -0.92 -49.45 13.05 21.66 0.28 -49.17 16 22 Si 0.99 42.59 29.55 68.60 2.03 44.61 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 C 0.01 0.35 5.67 86.70 0.49 0.84 16 27 C 0.11 2.38 4.36 31.85 0.14 2.52 16 28 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 29 O -0.56 -8.91 12.08 -148.98 -1.80 -10.71 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.64 7.87 -2.38 -0.02 0.62 16 34 H 0.06 0.66 8.09 -2.39 -0.02 0.64 16 35 H 0.09 0.85 7.57 -2.38 -0.02 0.83 16 36 H 0.09 0.81 7.87 -2.39 -0.02 0.79 16 37 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.42 6.51 7.23 -92.71 -0.67 5.84 16 39 H 0.06 1.48 7.56 -2.39 -0.02 1.46 16 40 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.07 2.19 7.83 -2.39 -0.02 2.17 16 42 H 0.10 3.31 8.08 -2.39 -0.02 3.30 16 43 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 44 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 45 H 0.05 1.42 7.81 -2.39 -0.02 1.41 16 46 H 0.08 2.53 7.10 -2.39 -0.02 2.52 16 47 H 0.40 3.57 9.12 -74.06 -0.68 2.90 16 Total: -1.00 -76.38 389.06 -3.20 -79.58 By element: Atomic # 1 Polarization: 38.85 SS G_CDS: -1.07 Total: 37.78 kcal Atomic # 6 Polarization: 20.27 SS G_CDS: 6.34 Total: 26.61 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -7.68 Total: -116.12 kcal Atomic # 8 Polarization: -69.64 SS G_CDS: -2.82 Total: -72.46 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -76.38 -3.20 -79.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219242563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.219 kcal (2) G-P(sol) polarization free energy of solvation -76.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds