Wall clock time and date at job start Tue Mar 31 2020 04:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42897 * 109.47119 * 2 1 4 4 C 1.42896 * 114.00099 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.46893 * 30.00194 * 4 3 2 6 6 C 1.53001 * 109.47621 * 270.00332 * 4 3 2 7 7 C 1.50702 * 109.47090 * 150.00258 * 4 3 2 8 8 O 1.21277 * 120.00102 * 5.00321 * 7 4 3 9 9 N 1.34783 * 119.99916 * 185.00201 * 7 4 3 10 10 C 1.46497 * 119.99900 * 179.97438 * 9 7 4 11 11 H 1.09003 * 110.36482 * 32.82704 * 10 9 7 12 12 C 1.54372 * 110.32794 * 270.64085 * 10 9 7 13 13 N 1.48568 * 104.59509 * 217.25287 * 12 10 9 14 14 C 1.46904 * 111.00069 * 159.03619 * 13 12 10 15 15 C 1.50693 * 109.47108 * 174.70753 * 14 13 12 16 16 O 1.21291 * 119.99991 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00196 * 180.02562 * 15 14 13 18 18 C 1.37092 * 120.00030 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00407 * 0.02562 * 18 17 15 20 20 C 1.38952 * 119.99923 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99844 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00188 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.47043 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.47321 * 120.00294 * 22 20 18 25 25 H 1.48503 * 109.47275 * 240.00588 * 22 20 18 26 26 C 1.48565 * 104.21993 * 39.48157 * 13 12 10 27 27 C 1.54267 * 110.32210 * 155.00015 * 10 9 7 28 28 H 1.08998 * 110.41212 * 237.83873 * 27 10 9 29 29 O 1.42905 * 110.32242 * 0.02562 * 27 10 9 30 30 H 1.09001 * 109.46969 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46898 * 299.99778 * 1 2 3 32 32 H 1.09005 * 109.46746 * 59.99307 * 1 2 3 33 33 H 1.08999 * 109.46898 * 240.00222 * 2 1 3 34 34 H 1.08996 * 109.47186 * 120.00327 * 2 1 3 35 35 H 1.09000 * 109.47648 * 179.97438 * 6 4 3 36 36 H 1.08994 * 109.47175 * 299.99937 * 6 4 3 37 37 H 1.09002 * 109.46932 * 59.99797 * 6 4 3 38 38 H 0.97001 * 120.00032 * 0.02562 * 9 7 4 39 39 H 1.08995 * 110.41612 * 98.47030 * 12 10 9 40 40 H 1.08996 * 110.41104 * 336.02539 * 12 10 9 41 41 H 1.08997 * 109.47183 * 294.70919 * 14 13 12 42 42 H 1.09004 * 109.46794 * 54.70327 * 14 13 12 43 43 H 0.97001 * 119.99823 * 359.97438 * 17 15 14 44 44 H 0.97001 * 119.99762 * 179.97438 * 21 20 18 45 45 H 1.08994 * 110.41037 * 201.73974 * 26 13 12 46 46 H 1.08996 * 110.51223 * 79.35031 * 26 13 12 47 47 H 0.96696 * 114.00036 * 177.08890 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8636 0.6015 -0.5130 6 6 3.9388 1.5005 1.4433 7 6 3.8348 2.7263 -0.7098 8 8 2.9865 3.5047 -1.0911 9 7 5.1387 2.9938 -0.9213 10 6 5.5313 4.2244 -1.6124 11 1 4.8310 5.0278 -1.3837 12 6 5.5956 3.9866 -3.1363 13 7 6.7577 4.7921 -3.5922 14 6 7.2591 4.3078 -4.8853 15 6 8.3493 5.2248 -5.3767 16 8 8.6767 6.1869 -4.7146 17 7 8.9605 4.9759 -6.5518 18 6 9.9519 5.8105 -6.9991 19 1 10.2435 6.6671 -6.4096 20 6 10.5825 5.5536 -8.2104 21 7 10.2280 4.5110 -8.9274 22 14 11.9339 6.6903 -8.8195 23 1 12.1436 7.7820 -7.8348 24 1 13.1934 5.9203 -8.9800 25 1 11.5392 7.2721 -10.1276 26 6 7.7729 4.6053 -2.5238 27 6 6.9637 4.6316 -1.2094 28 1 6.9679 5.6343 -0.7822 29 8 7.5026 3.6927 -0.2765 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5140 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 5.0254 1.5862 1.4437 36 1 3.5062 2.3590 1.9568 37 1 3.6467 0.5847 1.9571 38 1 5.8172 2.3711 -0.6166 39 1 4.6803 4.3352 -3.6145 40 1 5.7583 2.9301 -3.3496 41 1 7.6579 3.3004 -4.7662 42 1 6.4437 4.2925 -5.6085 43 1 8.6989 4.2063 -7.0812 44 1 10.6679 4.3319 -9.7732 45 1 8.4969 5.4199 -2.5408 46 1 8.2780 3.6465 -2.6403 47 1 8.4177 3.8730 -0.0212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219242564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:42 Heat of formation + Delta-G solvation = -153.043034 kcal Electronic energy + Delta-G solvation = -28510.804725 eV Core-core repulsion = 24308.173158 eV Total energy + Delta-G solvation = -4202.631568 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.48225 -39.30902 -38.11856 -37.61235 -35.83395 -34.40786 -33.84960 -32.75138 -31.31082 -30.73154 -29.86970 -28.02562 -26.56038 -24.81273 -24.11911 -23.03743 -21.55074 -20.99271 -20.48081 -19.22406 -17.94124 -17.82168 -17.51696 -17.12400 -16.16418 -16.11347 -15.69130 -15.58532 -14.94218 -14.91941 -14.67278 -14.53819 -14.08777 -13.76410 -13.64045 -13.48557 -13.30236 -13.06096 -12.89724 -12.80802 -12.57639 -12.31941 -12.13434 -12.06635 -11.72594 -11.56006 -11.47587 -11.39881 -11.34322 -11.11974 -10.89153 -10.36287 -10.25232 -10.22660 -10.12733 -9.66970 -9.52981 -9.18534 -8.59000 -8.10080 -7.97938 -6.44077 -3.84957 2.46004 2.56877 3.14447 3.25248 3.32133 3.48004 3.86703 3.89969 4.09481 4.28211 4.43239 4.51855 4.57197 4.58907 4.64417 4.74739 4.87112 4.98802 5.05006 5.11225 5.12908 5.21816 5.24993 5.31513 5.39177 5.40489 5.55480 5.62483 5.72922 5.73841 5.79839 5.81270 5.91304 5.96030 6.18769 6.21812 6.28955 6.75197 6.94423 7.07212 7.37080 7.44120 7.53112 8.03560 8.11406 8.58859 9.15635 9.51639 10.03054 10.73724 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.024422 B = 0.002103 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.237885 B =13311.010684 C =13963.905249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.073 3.927 5 H 0.085 0.915 6 C -0.169 4.169 7 C 0.513 3.487 8 O -0.520 6.520 9 N -0.707 5.707 10 C 0.153 3.847 11 H 0.107 0.893 12 C 0.019 3.981 13 N -0.478 5.478 14 C 0.036 3.964 15 C 0.445 3.555 16 O -0.579 6.579 17 N -0.564 5.564 18 C -0.298 4.298 19 H 0.104 0.896 20 C 0.021 3.979 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.005 3.995 27 C 0.094 3.906 28 H 0.080 0.920 29 O -0.568 6.568 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.409 0.591 39 H 0.091 0.909 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.092 0.908 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.106 0.894 46 H 0.050 0.950 47 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.388 -12.177 18.966 25.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.011 3.989 5 H 0.103 0.897 6 C -0.227 4.227 7 C 0.297 3.703 8 O -0.394 6.394 9 N -0.362 5.362 10 C 0.047 3.953 11 H 0.125 0.875 12 C -0.110 4.110 13 N -0.202 5.202 14 C -0.096 4.096 15 C 0.230 3.770 16 O -0.463 6.463 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.123 4.123 27 C 0.034 3.966 28 H 0.098 0.902 29 O -0.374 6.374 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.246 0.754 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.110 0.890 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.124 0.876 46 H 0.068 0.932 47 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -12.570 -10.556 18.813 24.967 hybrid contribution 1.853 -1.212 -0.656 2.309 sum -10.717 -11.768 18.157 24.146 Atomic orbital electron populations 1.21731 0.93373 1.02221 1.03487 1.22598 0.96030 0.83528 1.00077 1.88063 1.18325 1.26307 1.94936 1.21851 0.83787 0.96465 0.96793 0.89736 1.22225 1.01940 1.03636 0.94916 1.20404 0.82702 0.87726 0.79445 1.90733 1.50136 1.48600 1.49976 1.45689 1.06947 1.24040 1.59573 1.21740 0.94650 0.87703 0.91188 0.87496 1.23623 0.96359 0.96712 0.94338 1.65119 1.04756 1.49326 1.01030 1.22075 0.98661 0.96677 0.92193 1.19652 0.85604 0.88067 0.83668 1.90497 1.67088 1.31206 1.57470 1.41864 1.33393 1.26722 1.18109 1.19743 1.11678 1.07805 1.03542 0.87837 1.25274 0.99200 0.97304 0.96245 1.69621 1.42872 1.27411 1.14384 0.85795 0.79999 0.79821 0.78693 1.19216 1.20798 1.20722 1.23933 0.95862 1.02335 0.90197 1.22873 0.92151 0.92586 0.88962 0.90233 1.86232 1.33397 1.54130 1.63680 0.91017 0.91749 0.91579 0.93202 0.93228 0.90617 0.91068 0.91348 0.75434 0.89088 0.93328 0.93141 0.89000 0.77497 0.91911 0.87601 0.93205 0.76474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.05 0.41 6.47 37.16 0.24 0.65 16 3 O -0.36 -4.03 9.53 -55.09 -0.52 -4.55 16 4 C 0.07 0.68 3.13 -27.88 -0.09 0.59 16 5 H 0.08 0.59 7.79 -51.93 -0.40 0.19 16 6 C -0.17 -1.20 9.48 37.16 0.35 -0.85 16 7 C 0.51 6.36 7.18 -10.98 -0.08 6.29 16 8 O -0.52 -8.76 16.16 -14.30 -0.23 -8.99 16 9 N -0.71 -7.61 4.81 -52.47 -0.25 -7.86 16 10 C 0.15 1.91 3.41 -66.55 -0.23 1.68 16 11 H 0.11 1.47 7.56 -51.93 -0.39 1.08 16 12 C 0.02 0.26 6.20 -2.18 -0.01 0.25 16 13 N -0.48 -7.85 5.06 -231.41 -1.17 -9.02 16 14 C 0.04 0.63 5.30 -4.98 -0.03 0.61 16 15 C 0.44 10.35 7.58 -10.99 -0.08 10.27 16 16 O -0.58 -15.26 14.42 5.55 0.08 -15.18 16 17 N -0.56 -14.16 5.29 -10.97 -0.06 -14.21 16 18 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 19 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 22 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 C 0.01 0.08 5.53 -2.18 -0.01 0.06 16 27 C 0.09 1.08 4.43 -25.35 -0.11 0.97 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 29 O -0.57 -5.07 11.53 -35.23 -0.41 -5.48 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.34 8.09 -51.93 -0.42 -0.08 16 34 H 0.05 0.29 7.87 -51.93 -0.41 -0.12 16 35 H 0.07 0.44 7.93 -51.93 -0.41 0.03 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.38 7.87 -51.93 -0.41 -0.03 16 38 H 0.41 3.66 7.05 -40.82 -0.29 3.37 16 39 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.05 0.63 7.91 -51.93 -0.41 0.22 16 41 H 0.05 0.81 7.88 -51.93 -0.41 0.40 16 42 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 43 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 44 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 45 H 0.11 1.81 6.91 -51.93 -0.36 1.45 16 46 H 0.05 0.71 7.76 -51.93 -0.40 0.30 16 47 H 0.39 2.16 9.11 45.56 0.41 2.57 16 LS Contribution 388.95 15.07 5.86 5.86 Total: -1.00 -34.61 388.95 -7.60 -42.21 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -6.69 Total: 13.06 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: 0.09 Total: 11.96 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.76 Total: -54.76 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -1.08 Total: -34.20 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.61 -7.60 -42.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219242564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.834 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds