Wall clock time and date at job start Tue Mar 31 2020 04:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42897 * 109.47119 * 2 1 4 4 C 1.42896 * 114.00099 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.46893 * 30.00194 * 4 3 2 6 6 C 1.53001 * 109.47621 * 270.00332 * 4 3 2 7 7 C 1.50702 * 109.47090 * 150.00258 * 4 3 2 8 8 O 1.21277 * 120.00102 * 5.00321 * 7 4 3 9 9 N 1.34783 * 119.99916 * 185.00201 * 7 4 3 10 10 C 1.46497 * 119.99900 * 179.97438 * 9 7 4 11 11 H 1.09003 * 110.36482 * 32.82704 * 10 9 7 12 12 C 1.54372 * 110.32794 * 270.64085 * 10 9 7 13 13 N 1.48568 * 104.59509 * 217.25287 * 12 10 9 14 14 C 1.46904 * 111.00069 * 159.03619 * 13 12 10 15 15 C 1.50693 * 109.47108 * 174.70753 * 14 13 12 16 16 O 1.21291 * 119.99991 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00196 * 180.02562 * 15 14 13 18 18 C 1.37092 * 120.00030 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00407 * 0.02562 * 18 17 15 20 20 C 1.38952 * 119.99923 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99844 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00188 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.47043 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.47321 * 120.00294 * 22 20 18 25 25 H 1.48503 * 109.47275 * 240.00588 * 22 20 18 26 26 C 1.48565 * 104.21993 * 39.48157 * 13 12 10 27 27 C 1.54267 * 110.32210 * 155.00015 * 10 9 7 28 28 H 1.08998 * 110.41212 * 237.83873 * 27 10 9 29 29 O 1.42905 * 110.32242 * 0.02562 * 27 10 9 30 30 H 1.09001 * 109.46969 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46898 * 299.99778 * 1 2 3 32 32 H 1.09005 * 109.46746 * 59.99307 * 1 2 3 33 33 H 1.08999 * 109.46898 * 240.00222 * 2 1 3 34 34 H 1.08996 * 109.47186 * 120.00327 * 2 1 3 35 35 H 1.09000 * 109.47648 * 179.97438 * 6 4 3 36 36 H 1.08994 * 109.47175 * 299.99937 * 6 4 3 37 37 H 1.09002 * 109.46932 * 59.99797 * 6 4 3 38 38 H 0.97001 * 120.00032 * 0.02562 * 9 7 4 39 39 H 1.08995 * 110.41612 * 98.47030 * 12 10 9 40 40 H 1.08996 * 110.41104 * 336.02539 * 12 10 9 41 41 H 1.08997 * 109.47183 * 294.70919 * 14 13 12 42 42 H 1.09004 * 109.46794 * 54.70327 * 14 13 12 43 43 H 0.97001 * 119.99823 * 359.97438 * 17 15 14 44 44 H 0.97001 * 119.99762 * 179.97438 * 21 20 18 45 45 H 1.08994 * 110.41037 * 201.73974 * 26 13 12 46 46 H 1.08996 * 110.51223 * 79.35031 * 26 13 12 47 47 H 0.96696 * 114.00036 * 177.08890 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8636 0.6015 -0.5130 6 6 3.9388 1.5005 1.4433 7 6 3.8348 2.7263 -0.7098 8 8 2.9865 3.5047 -1.0911 9 7 5.1387 2.9938 -0.9213 10 6 5.5313 4.2244 -1.6124 11 1 4.8310 5.0278 -1.3837 12 6 5.5956 3.9866 -3.1363 13 7 6.7577 4.7921 -3.5922 14 6 7.2591 4.3078 -4.8853 15 6 8.3493 5.2248 -5.3767 16 8 8.6767 6.1869 -4.7146 17 7 8.9605 4.9759 -6.5518 18 6 9.9519 5.8105 -6.9991 19 1 10.2435 6.6671 -6.4096 20 6 10.5825 5.5536 -8.2104 21 7 10.2280 4.5110 -8.9274 22 14 11.9339 6.6903 -8.8195 23 1 12.1436 7.7820 -7.8348 24 1 13.1934 5.9203 -8.9800 25 1 11.5392 7.2721 -10.1276 26 6 7.7729 4.6053 -2.5238 27 6 6.9637 4.6316 -1.2094 28 1 6.9679 5.6343 -0.7822 29 8 7.5026 3.6927 -0.2765 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5140 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 5.0254 1.5862 1.4437 36 1 3.5062 2.3590 1.9568 37 1 3.6467 0.5847 1.9571 38 1 5.8172 2.3711 -0.6166 39 1 4.6803 4.3352 -3.6145 40 1 5.7583 2.9301 -3.3496 41 1 7.6579 3.3004 -4.7662 42 1 6.4437 4.2925 -5.6085 43 1 8.6989 4.2063 -7.0812 44 1 10.6679 4.3319 -9.7732 45 1 8.4969 5.4199 -2.5408 46 1 8.2780 3.6465 -2.6403 47 1 8.4177 3.8730 -0.0212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219242564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:40 Heat of formation + Delta-G solvation = -182.874627 kcal Electronic energy + Delta-G solvation = -28512.098320 eV Core-core repulsion = 24308.173158 eV Total energy + Delta-G solvation = -4203.925163 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.48924 -40.50825 -39.56827 -38.56505 -36.88047 -35.92434 -35.34389 -33.45254 -33.26655 -31.65191 -30.78107 -29.10372 -28.06138 -26.18035 -25.25874 -23.62129 -22.78502 -21.91892 -21.46471 -21.00599 -19.89351 -18.70499 -18.42904 -17.86902 -17.78168 -16.92752 -16.79820 -16.62431 -16.39189 -16.28736 -15.83426 -15.74616 -15.56980 -15.08359 -14.91060 -14.35673 -14.19933 -14.16751 -14.03869 -13.73137 -13.45686 -13.39244 -13.26533 -13.14124 -12.97384 -12.86782 -12.59554 -12.54205 -12.40523 -12.28132 -12.12447 -12.07648 -11.98446 -11.49392 -11.05417 -10.99612 -10.49037 -10.37943 -10.15394 -10.01658 -9.48381 -8.47197 -5.95754 1.36240 1.41809 1.52742 1.55796 1.72924 2.03573 2.27757 2.64023 2.97275 3.13615 3.19163 3.30784 3.46660 3.67987 3.76051 3.92465 4.02840 4.04058 4.17178 4.20951 4.25374 4.33553 4.34327 4.40662 4.48819 4.49822 4.62251 4.62679 4.77556 4.83658 4.88528 4.90581 4.98408 5.02782 5.20806 5.27609 5.30984 5.40958 5.73035 5.78118 6.03084 6.13317 6.56019 6.59364 6.76433 7.12281 7.22650 7.55176 8.10445 8.70473 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.024422 B = 0.002103 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.237885 B =13311.010684 C =13963.905249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.393 6.393 4 C 0.073 3.927 5 H 0.114 0.886 6 C -0.163 4.163 7 C 0.508 3.492 8 O -0.572 6.572 9 N -0.691 5.691 10 C 0.154 3.846 11 H 0.091 0.909 12 C 0.026 3.974 13 N -0.501 5.501 14 C 0.048 3.952 15 C 0.444 3.556 16 O -0.613 6.613 17 N -0.574 5.574 18 C -0.330 4.330 19 H 0.080 0.920 20 C -0.015 4.015 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.273 1.273 26 C 0.008 3.992 27 C 0.114 3.886 28 H 0.083 0.917 29 O -0.561 6.561 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.088 0.912 38 H 0.421 0.579 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.076 0.924 46 H 0.057 0.943 47 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.917 -14.196 19.926 26.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.312 6.312 4 C 0.012 3.988 5 H 0.131 0.869 6 C -0.220 4.220 7 C 0.295 3.705 8 O -0.451 6.451 9 N -0.347 5.347 10 C 0.048 3.952 11 H 0.109 0.891 12 C -0.102 4.102 13 N -0.226 5.226 14 C -0.084 4.084 15 C 0.231 3.769 16 O -0.499 6.499 17 N -0.212 5.212 18 C -0.460 4.460 19 H 0.098 0.902 20 C -0.214 4.214 21 N -0.562 5.562 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.198 1.198 26 C -0.120 4.120 27 C 0.054 3.946 28 H 0.101 0.899 29 O -0.370 6.370 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.260 0.740 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.125 0.875 43 H 0.229 0.771 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.075 0.925 47 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -12.072 -12.624 19.797 26.401 hybrid contribution 1.682 -0.606 -0.906 2.004 sum -10.391 -13.231 18.891 25.296 Atomic orbital electron populations 1.21773 0.93296 1.03423 1.02381 1.22828 0.96230 0.82271 1.01546 1.88031 1.19417 1.28584 1.95179 1.21984 0.83431 0.95384 0.97951 0.86868 1.22208 1.02697 1.03907 0.93237 1.21118 0.82418 0.88298 0.78671 1.90710 1.51535 1.50548 1.52272 1.45557 1.06944 1.23483 1.58674 1.21555 0.94937 0.88099 0.90631 0.89092 1.23555 0.94746 0.96930 0.95018 1.65021 1.06022 1.50621 1.00980 1.21924 0.97105 0.96057 0.93278 1.20608 0.85728 0.88038 0.82540 1.90474 1.68249 1.32963 1.58227 1.41926 1.33551 1.26752 1.18930 1.19692 1.13569 1.08296 1.04424 0.90189 1.26050 1.00912 0.98630 0.95825 1.69681 1.43614 1.28230 1.14692 0.84862 0.77535 0.77864 0.78020 1.19730 1.19551 1.19802 1.23860 0.95418 1.01392 0.91340 1.22521 0.90905 0.93270 0.87954 0.89930 1.86197 1.34947 1.53258 1.62572 0.88645 0.92306 0.93233 0.92318 0.91002 0.89034 0.92875 0.89275 0.73974 0.89998 0.91963 0.90811 0.87547 0.77073 0.91333 0.90603 0.92485 0.74383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 71.98 0.74 -1.15 16 2 C 0.05 0.62 6.47 71.98 0.47 1.09 16 3 O -0.39 -8.42 9.53 -129.99 -1.24 -9.66 16 4 C 0.07 1.22 3.13 29.85 0.09 1.31 16 5 H 0.11 1.20 7.79 -2.38 -0.02 1.18 16 6 C -0.16 -1.89 9.48 71.98 0.68 -1.21 16 7 C 0.51 12.12 7.18 87.66 0.63 12.75 16 8 O -0.57 -19.56 16.16 15.97 0.26 -19.30 16 9 N -0.69 -13.62 4.81 -438.29 -2.11 -15.73 16 10 C 0.15 3.70 3.41 45.89 0.16 3.85 16 11 H 0.09 2.53 7.56 -2.39 -0.02 2.51 16 12 C 0.03 0.70 6.20 86.45 0.54 1.24 16 13 N -0.50 -16.22 5.06 -886.06 -4.49 -20.70 16 14 C 0.05 1.66 5.30 85.55 0.45 2.12 16 15 C 0.44 20.91 7.58 87.65 0.66 21.57 16 16 O -0.61 -33.23 14.42 -3.06 -0.04 -33.28 16 17 N -0.57 -29.26 5.29 -307.00 -1.62 -30.89 16 18 C -0.33 -18.61 9.68 84.04 0.81 -17.79 16 19 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 20 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 21 N -0.92 -49.50 13.05 21.66 0.28 -49.22 16 22 Si 0.99 42.70 29.55 68.60 2.03 44.72 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 26 C 0.01 0.24 5.53 86.45 0.48 0.72 16 27 C 0.11 2.45 4.43 31.49 0.14 2.59 16 28 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 29 O -0.56 -8.46 11.53 -148.98 -1.72 -10.18 16 30 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.06 0.65 8.09 -2.39 -0.02 0.64 16 34 H 0.07 0.62 7.87 -2.39 -0.02 0.60 16 35 H 0.09 0.76 7.93 -2.39 -0.02 0.74 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.09 0.68 7.87 -2.39 -0.02 0.66 16 38 H 0.42 6.27 7.05 -92.71 -0.65 5.61 16 39 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.06 1.48 7.91 -2.39 -0.02 1.46 16 41 H 0.07 2.23 7.88 -2.39 -0.02 2.21 16 42 H 0.11 3.39 8.13 -2.38 -0.02 3.37 16 43 H 0.40 19.21 7.90 -92.71 -0.73 18.47 16 44 H 0.28 13.92 8.31 -92.71 -0.77 13.14 16 45 H 0.08 2.64 6.91 -2.39 -0.02 2.62 16 46 H 0.06 1.52 7.76 -2.39 -0.02 1.50 16 47 H 0.40 3.33 9.11 -74.06 -0.67 2.66 16 Total: -1.00 -76.96 388.95 -3.38 -80.34 By element: Atomic # 1 Polarization: 38.18 SS G_CDS: -1.05 Total: 37.13 kcal Atomic # 6 Polarization: 20.45 SS G_CDS: 6.32 Total: 26.77 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -7.93 Total: -116.54 kcal Atomic # 8 Polarization: -69.68 SS G_CDS: -2.74 Total: -72.42 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -76.96 -3.38 -80.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219242564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.535 kcal (2) G-P(sol) polarization free energy of solvation -76.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds