Wall clock time and date at job start Tue Mar 31 2020 04:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42888 * 114.00198 * 2 1 4 4 C 1.52999 * 109.47421 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47566 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47359 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99517 * 359.97438 * 6 5 4 8 8 N 1.34768 * 120.00081 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99994 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.36594 * 32.81358 * 9 8 6 11 11 C 1.54375 * 110.32194 * 270.63528 * 9 8 6 12 12 N 1.48558 * 104.59633 * 217.25049 * 11 9 8 13 13 C 1.46895 * 111.00243 * 159.04364 * 12 11 9 14 14 C 1.50698 * 109.47171 * 174.70750 * 13 12 11 15 15 O 1.21287 * 120.00220 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00168 * 179.97438 * 14 13 12 17 17 C 1.37094 * 120.00160 * 179.97438 * 16 14 13 18 18 H 1.07998 * 120.00194 * 0.02562 * 17 16 14 19 19 C 1.38959 * 120.00092 * 180.02562 * 17 16 14 20 20 N 1.31404 * 120.00024 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99690 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46714 * 90.00492 * 21 19 17 23 23 H 1.48499 * 109.46985 * 210.00290 * 21 19 17 24 24 H 1.48502 * 109.47453 * 330.00296 * 21 19 17 25 25 C 1.48557 * 104.22152 * 39.48309 * 12 11 9 26 26 C 1.54261 * 110.32382 * 154.99611 * 9 8 6 27 27 H 1.08998 * 110.32297 * 237.78970 * 26 9 8 28 28 O 1.42897 * 110.32321 * 0.02562 * 26 9 8 29 29 H 1.08999 * 109.46831 * 300.00259 * 1 2 3 30 30 H 1.09002 * 109.46988 * 59.99967 * 1 2 3 31 31 H 1.08997 * 109.47327 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47371 * 59.99841 * 3 2 1 33 33 H 1.08996 * 109.47522 * 299.99740 * 3 2 1 34 34 H 1.09003 * 109.46869 * 59.99667 * 4 3 2 35 35 H 1.09004 * 109.47277 * 300.00301 * 4 3 2 36 36 H 1.09003 * 109.47369 * 59.99887 * 5 4 3 37 37 H 1.09001 * 109.46944 * 299.99847 * 5 4 3 38 38 H 0.97004 * 120.00524 * 359.97438 * 8 6 5 39 39 H 1.09006 * 110.41277 * 98.47259 * 11 9 8 40 40 H 1.09001 * 110.51350 * 336.07882 * 11 9 8 41 41 H 1.09004 * 109.46964 * 294.70412 * 13 12 11 42 42 H 1.08998 * 109.47693 * 54.70245 * 13 12 11 43 43 H 0.97005 * 120.00121 * 0.02562 * 16 14 13 44 44 H 0.97003 * 120.00209 * 179.97438 * 20 19 17 45 45 H 1.09001 * 110.41191 * 201.73984 * 25 12 11 46 46 H 1.09000 * 110.41358 * 79.29561 * 25 12 11 47 47 H 0.96703 * 113.99916 * 177.09361 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1579 2.5822 0.0013 6 6 5.6602 2.4632 0.0026 7 8 6.1817 1.3682 0.0034 8 7 6.4241 3.5734 0.0038 9 6 7.8846 3.4577 0.0045 10 1 8.1952 2.5721 -0.5498 11 6 8.4171 3.3982 1.4523 12 7 9.6852 4.1711 1.4169 13 6 10.0596 4.6305 2.7610 14 6 11.4107 5.2957 2.7064 15 8 12.0033 5.3793 1.6514 16 7 11.9602 5.7986 3.8296 17 6 13.1895 6.4033 3.7800 18 1 13.7176 6.4770 2.8408 19 6 13.7563 6.9213 4.9382 20 7 14.9344 7.5013 4.8906 21 14 12.8426 6.7944 6.5626 22 1 13.2163 5.5284 7.2429 23 1 13.2060 7.9465 7.4262 24 1 11.3793 6.8074 6.3098 25 6 9.3869 5.3212 0.5250 26 6 8.5226 4.7228 -0.6056 27 1 9.1464 4.4580 -1.4593 28 8 7.5086 5.6499 -0.9983 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6888 1.8463 -0.8899 34 1 3.8575 0.6434 -0.8891 35 1 3.8568 0.6437 0.8909 36 1 3.8359 3.1230 0.8913 37 1 3.8367 3.1233 -0.8887 38 1 6.0071 4.4492 0.0035 39 1 8.6092 2.3658 1.7446 40 1 7.7087 3.8614 2.1391 41 1 9.3178 5.3436 3.1209 42 1 10.1017 3.7773 3.4380 43 1 11.4861 5.7321 4.6733 44 1 15.3299 7.8633 5.6990 45 1 10.3092 5.7367 0.1191 46 1 8.8295 6.0865 1.0651 47 1 7.8520 6.4835 -1.3481 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219256129.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:12 Heat of formation + Delta-G solvation = -152.396644 kcal Electronic energy + Delta-G solvation = -27914.461376 eV Core-core repulsion = 23711.857838 eV Total energy + Delta-G solvation = -4202.603538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.42654 -39.18568 -38.31624 -37.98727 -35.90718 -34.43706 -33.96538 -33.87553 -31.72192 -30.54738 -28.62558 -27.83683 -26.72836 -25.82329 -24.10318 -22.46078 -21.55055 -20.80447 -20.50140 -19.39023 -18.34485 -17.87482 -17.37442 -16.75065 -16.57798 -16.19979 -16.01032 -15.65009 -15.30106 -15.09599 -15.06166 -14.93559 -14.31323 -14.10355 -13.76781 -13.70781 -13.15753 -13.12672 -12.97378 -12.59590 -12.47696 -12.41527 -12.18519 -12.07076 -11.96277 -11.55479 -11.47366 -11.43024 -11.28334 -11.20411 -10.96271 -10.62335 -10.18306 -10.09581 -10.04273 -10.00357 -9.58643 -9.22515 -8.71143 -8.23553 -8.17647 -6.33760 -3.85265 2.45677 2.77354 2.99877 3.05033 3.13097 3.37769 3.69570 3.82529 4.07034 4.10712 4.44876 4.45138 4.48597 4.56215 4.68388 4.86170 4.87736 4.89443 4.99343 5.00141 5.00932 5.07415 5.17226 5.18924 5.20136 5.26377 5.36211 5.50696 5.58886 5.69579 5.73830 5.84643 5.86610 5.90565 5.91150 6.13542 6.25751 6.73581 6.85283 6.94689 7.34192 7.39989 7.55044 8.08256 8.11105 8.57053 8.92235 9.39435 9.79759 10.79276 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.021102 B = 0.001965 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.591057 B =14243.570612 C =15071.099745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.061 3.939 4 C -0.104 4.104 5 C -0.137 4.137 6 C 0.512 3.488 7 O -0.540 6.540 8 N -0.711 5.711 9 C 0.151 3.849 10 H 0.107 0.893 11 C 0.020 3.980 12 N -0.478 5.478 13 C 0.033 3.967 14 C 0.454 3.546 15 O -0.560 6.560 16 N -0.590 5.590 17 C -0.305 4.305 18 H 0.120 0.880 19 C 0.042 3.958 20 N -0.881 5.881 21 Si 0.879 3.121 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.270 1.270 25 C 0.004 3.996 26 C 0.094 3.906 27 H 0.080 0.920 28 O -0.568 6.568 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.410 0.590 39 H 0.091 0.909 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.093 0.907 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.107 0.893 46 H 0.050 0.950 47 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.035 -6.605 -8.374 29.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.016 4.016 4 C -0.142 4.142 5 C -0.177 4.177 6 C 0.298 3.702 7 O -0.416 6.416 8 N -0.364 5.364 9 C 0.045 3.955 10 H 0.125 0.875 11 C -0.110 4.110 12 N -0.203 5.203 13 C -0.099 4.099 14 C 0.239 3.761 15 O -0.442 6.442 16 N -0.230 5.230 17 C -0.434 4.434 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.521 5.521 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 C -0.124 4.124 26 C 0.034 3.966 27 H 0.098 0.902 28 O -0.374 6.374 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.246 0.754 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.111 0.889 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.125 0.875 46 H 0.068 0.932 47 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -26.888 -8.175 -8.977 29.502 hybrid contribution -1.209 1.728 1.743 2.736 sum -28.096 -6.447 -7.234 29.720 Atomic orbital electron populations 1.22750 0.80961 1.02861 0.99948 1.87896 1.19727 1.27985 1.95407 1.22553 0.94120 0.84748 1.00164 1.21222 0.92081 0.95829 1.05112 1.21526 0.92098 0.99386 1.04660 1.20616 0.89468 0.84305 0.75809 1.90733 1.75035 1.26571 1.49308 1.45797 1.06187 1.09505 1.74897 1.21731 0.79666 0.98003 0.96104 0.87520 1.23619 0.90979 1.00442 0.95925 1.65097 1.27559 1.18429 1.09198 1.22106 0.96785 0.99887 0.91113 1.19551 0.87537 0.84122 0.84894 1.90538 1.63579 1.60645 1.29419 1.42200 1.19208 1.53418 1.08180 1.19423 0.92765 1.32715 0.98488 0.86254 1.25032 0.96008 0.97024 0.98026 1.69616 1.15490 1.37657 1.29291 0.86678 0.79611 0.78949 0.84176 1.19551 1.20172 1.19595 1.23957 1.00741 0.93274 0.94443 1.22866 0.88353 0.88726 0.96690 0.90217 1.86234 1.35233 1.30486 1.85463 0.94052 0.94072 0.89565 0.93240 0.93238 0.90206 0.90188 0.88726 0.88645 0.75384 0.89094 0.93338 0.93038 0.88870 0.79729 0.91592 0.87501 0.93170 0.76429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.54 10.70 -35.23 -0.38 -3.92 16 3 C 0.06 0.42 5.94 37.16 0.22 0.64 16 4 C -0.10 -0.86 4.87 -26.73 -0.13 -0.99 16 5 C -0.14 -0.92 5.70 -27.88 -0.16 -1.08 16 6 C 0.51 5.42 7.83 -10.99 -0.09 5.33 16 7 O -0.54 -7.91 15.63 5.55 0.09 -7.82 16 8 N -0.71 -6.96 4.85 -52.47 -0.25 -7.22 16 9 C 0.15 1.77 3.41 -66.55 -0.23 1.54 16 10 H 0.11 1.39 7.56 -51.93 -0.39 1.00 16 11 C 0.02 0.25 6.20 -2.19 -0.01 0.24 16 12 N -0.48 -7.48 5.06 -231.41 -1.17 -8.65 16 13 C 0.03 0.55 5.30 -4.98 -0.03 0.52 16 14 C 0.45 10.11 7.59 -10.99 -0.08 10.03 16 15 O -0.56 -14.58 14.42 5.55 0.08 -14.50 16 16 N -0.59 -13.89 5.09 -10.96 -0.06 -13.94 16 17 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 18 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 19 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 20 N -0.88 -25.51 13.96 55.50 0.77 -24.73 16 21 Si 0.88 19.20 27.74 -169.99 -4.71 14.49 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 25 C 0.00 0.06 5.53 -2.18 -0.01 0.05 16 26 C 0.09 1.03 4.43 -25.34 -0.11 0.92 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 28 O -0.57 -4.92 11.53 -35.23 -0.41 -5.33 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.78 8.10 -51.93 -0.42 0.35 16 35 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.41 3.37 7.26 -40.82 -0.30 3.07 16 39 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 0.58 7.91 -51.93 -0.41 0.17 16 41 H 0.05 0.75 7.88 -51.93 -0.41 0.34 16 42 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 43 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 44 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.11 1.78 6.91 -51.93 -0.36 1.42 16 46 H 0.05 0.68 7.76 -51.93 -0.40 0.27 16 47 H 0.39 2.09 9.11 45.56 0.41 2.50 16 LS Contribution 386.63 15.07 5.83 5.83 Total: -1.00 -35.51 386.63 -6.69 -42.20 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -6.71 Total: 12.76 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 0.24 Total: 10.85 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.71 Total: -54.55 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -0.62 Total: -31.57 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.51 -6.69 -42.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219256129.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.200 kcal (2) G-P(sol) polarization free energy of solvation -35.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds