Wall clock time and date at job start Tue Mar 31 2020 04:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42897 * 114.00352 * 2 1 4 4 C 1.53006 * 109.47296 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47078 * 55.00229 * 4 3 2 6 6 C 1.52995 * 109.46955 * 294.99689 * 4 3 2 7 7 C 1.50705 * 109.46691 * 174.99877 * 4 3 2 8 8 O 1.21273 * 120.00344 * 0.02562 * 7 4 3 9 9 N 1.34781 * 119.99464 * 179.97438 * 7 4 3 10 10 C 1.46493 * 119.99809 * 179.97438 * 9 7 4 11 11 H 1.09002 * 110.36904 * 35.73116 * 10 9 7 12 12 C 1.54385 * 110.32510 * 273.54523 * 10 9 7 13 13 N 1.48562 * 104.59406 * 217.25093 * 12 10 9 14 14 C 1.46901 * 110.99567 * 159.04212 * 13 12 10 15 15 C 1.50701 * 109.46921 * 169.99894 * 14 13 12 16 16 O 1.21294 * 119.99849 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99795 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99707 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99704 * 359.97438 * 18 17 15 20 20 C 1.38941 * 119.99927 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00180 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00273 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47268 * 89.99721 * 22 20 18 24 24 H 1.48498 * 109.47211 * 209.99980 * 22 20 18 25 25 H 1.48505 * 109.46734 * 329.99774 * 22 20 18 26 26 C 1.48554 * 104.22366 * 39.48381 * 13 12 10 27 27 C 1.54258 * 110.32488 * 157.91229 * 10 9 7 28 28 H 1.09008 * 110.32273 * 237.79075 * 27 10 9 29 29 O 1.42905 * 110.32306 * 359.89208 * 27 10 9 30 30 H 1.09001 * 109.47473 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47427 * 300.00601 * 1 2 3 32 32 H 1.09010 * 109.46975 * 60.00011 * 1 2 3 33 33 H 1.08995 * 109.47366 * 59.99450 * 3 2 1 34 34 H 1.09009 * 109.47104 * 299.99823 * 3 2 1 35 35 H 1.09002 * 109.47525 * 299.99969 * 6 4 3 36 36 H 1.09004 * 109.47230 * 60.00235 * 6 4 3 37 37 H 1.08998 * 109.47237 * 180.02562 * 6 4 3 38 38 H 0.96998 * 119.99957 * 359.97438 * 9 7 4 39 39 H 1.09005 * 110.40729 * 98.47143 * 12 10 9 40 40 H 1.08997 * 110.41172 * 336.03293 * 12 10 9 41 41 H 1.09002 * 109.47401 * 49.99922 * 14 13 12 42 42 H 1.09001 * 109.46874 * 289.99935 * 14 13 12 43 43 H 0.96995 * 120.00011 * 0.02562 * 17 15 14 44 44 H 0.97000 * 119.99884 * 180.02562 * 21 20 18 45 45 H 1.09002 * 110.41148 * 79.29006 * 26 13 12 46 46 H 1.08997 * 110.41369 * 201.73410 * 26 13 12 47 47 H 0.96700 * 114.00160 * 179.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8514 0.5682 -0.8409 6 6 3.9952 0.5369 1.3083 7 6 4.1480 2.5559 -0.1232 8 8 3.4350 3.5336 -0.2036 9 7 5.4884 2.6958 -0.1437 10 6 6.0839 4.0288 -0.2646 11 1 5.4838 4.7627 0.2735 12 6 6.2114 4.4263 -1.7510 13 7 7.4966 5.1671 -1.8314 14 6 8.0090 5.1841 -3.2081 15 6 9.1702 6.1403 -3.3000 16 8 9.5352 6.7475 -2.3155 17 7 9.8036 6.3200 -4.4760 18 6 10.8603 7.1896 -4.5596 19 1 11.1848 7.7308 -3.6831 20 6 11.5130 7.3752 -5.7720 21 7 11.1179 6.7170 -6.8386 22 14 12.9532 8.5594 -5.8857 23 1 14.2160 7.8319 -5.6009 24 1 13.0123 9.1372 -7.2524 25 1 12.7762 9.6507 -4.8942 26 6 8.4089 4.4139 -0.9330 27 6 7.5296 4.0206 0.2734 28 1 7.6391 4.7505 1.0756 29 8 7.8782 2.7156 0.7400 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8901 35 1 3.6792 1.1533 2.1499 36 1 3.5521 -0.4550 1.3979 37 1 5.0818 0.4512 1.3090 38 1 6.0587 1.9139 -0.0783 39 1 5.3823 5.0702 -2.0447 40 1 6.2449 3.5373 -2.3807 41 1 7.2186 5.5061 -3.8861 42 1 8.3398 4.1831 -3.4849 43 1 9.5119 5.8342 -5.2632 44 1 11.5738 6.8464 -7.6849 45 1 8.7864 3.5228 -1.4347 46 1 9.2346 5.0484 -0.6109 47 1 8.7773 2.6501 1.0898 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219353967.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:37 Heat of formation + Delta-G solvation = -185.782060 kcal Electronic energy + Delta-G solvation = -28444.566463 eV Core-core repulsion = 24240.515224 eV Total energy + Delta-G solvation = -4204.051238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.51119 -40.47897 -39.52473 -38.67938 -36.88807 -35.91828 -35.36951 -34.58354 -33.28594 -31.43550 -29.18338 -28.33085 -27.97397 -26.68433 -26.06624 -24.17152 -22.75284 -21.66670 -21.12243 -20.99656 -19.89047 -18.75450 -18.30860 -17.79622 -17.37584 -17.02653 -16.84596 -16.58726 -16.43918 -16.29469 -16.02552 -15.81185 -15.67018 -15.09794 -15.06984 -14.88500 -14.23731 -14.20321 -14.08104 -13.73670 -13.49601 -13.43154 -13.20324 -13.14901 -12.96479 -12.61410 -12.52298 -12.43046 -12.41332 -12.28919 -12.12974 -12.04732 -11.84617 -11.48650 -11.04986 -10.87919 -10.66936 -10.38453 -10.14683 -10.01254 -9.47954 -8.46661 -5.95427 1.37779 1.41718 1.54185 1.54991 1.85176 2.04374 2.28276 2.65789 2.98448 3.15213 3.19471 3.32636 3.46619 3.62353 3.75131 3.88639 4.02697 4.04444 4.17253 4.25762 4.32025 4.32944 4.42960 4.47951 4.48705 4.51242 4.62245 4.65077 4.67674 4.82967 4.85927 4.87972 4.92156 4.95893 5.00415 5.30114 5.33935 5.40833 5.73089 5.78385 6.03315 6.14121 6.53023 6.59920 6.76249 7.12601 7.21303 7.55740 8.11203 8.70764 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.026055 B = 0.002051 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.398640 B =13651.657742 C =14242.759344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.082 3.918 4 C -0.103 4.103 5 H 0.120 0.880 6 C -0.134 4.134 7 C 0.520 3.480 8 O -0.581 6.581 9 N -0.694 5.694 10 C 0.154 3.846 11 H 0.094 0.906 12 C 0.026 3.974 13 N -0.501 5.501 14 C 0.048 3.952 15 C 0.444 3.556 16 O -0.614 6.614 17 N -0.575 5.575 18 C -0.331 4.331 19 H 0.080 0.920 20 C -0.014 4.014 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.273 1.273 26 C 0.008 3.992 27 C 0.114 3.886 28 H 0.084 0.916 29 O -0.562 6.562 30 H 0.103 0.897 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.421 0.579 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.106 0.894 42 H 0.074 0.926 43 H 0.395 0.605 44 H 0.277 0.723 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.980 -17.184 13.684 26.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C 0.005 3.995 4 C -0.124 4.124 5 H 0.138 0.862 6 C -0.191 4.191 7 C 0.307 3.693 8 O -0.461 6.461 9 N -0.347 5.347 10 C 0.048 3.952 11 H 0.112 0.888 12 C -0.103 4.103 13 N -0.226 5.226 14 C -0.083 4.083 15 C 0.231 3.769 16 O -0.499 6.499 17 N -0.212 5.212 18 C -0.461 4.461 19 H 0.098 0.902 20 C -0.214 4.214 21 N -0.562 5.562 22 Si 0.817 3.183 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.198 1.198 26 C -0.120 4.120 27 C 0.053 3.947 28 H 0.102 0.898 29 O -0.371 6.371 30 H 0.122 0.878 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.260 0.740 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.124 0.876 42 H 0.092 0.908 43 H 0.229 0.771 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.092 0.908 47 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -15.691 -15.840 14.071 26.365 hybrid contribution 1.312 -0.043 -1.014 1.659 sum -14.379 -15.883 13.057 25.090 Atomic orbital electron populations 1.22933 0.79390 1.04027 1.00686 1.87766 1.21399 1.27583 1.95591 1.22147 0.92069 0.84309 1.00951 1.21148 0.94701 0.93171 1.03387 0.86193 1.21700 1.02351 1.01429 0.93650 1.20857 0.82375 0.91294 0.74726 1.90707 1.61821 1.42083 1.51464 1.45638 1.06134 1.09615 1.73307 1.21568 0.92776 0.85859 0.95032 0.88831 1.23562 0.92546 0.97447 0.96695 1.64982 1.03119 1.47869 1.06663 1.21914 0.96374 0.98210 0.91848 1.20635 0.86323 0.86594 0.83353 1.90477 1.69220 1.52819 1.37410 1.41927 1.29507 1.39777 1.10012 1.19657 1.09009 1.20762 0.96669 0.90214 1.26044 1.01508 0.99640 0.94183 1.69677 1.42773 1.42830 1.00940 0.84920 0.77691 0.77948 0.77732 1.19524 1.19673 1.19825 1.23856 0.96699 0.96784 0.94696 1.22509 0.91795 0.85752 0.94634 0.89766 1.86194 1.38638 1.28812 1.83407 0.87833 0.93383 0.93669 0.93055 0.93377 0.92810 0.90115 0.90493 0.74018 0.89913 0.92178 0.87583 0.90827 0.77089 0.91336 0.92454 0.90820 0.74335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.40 -6.93 10.24 -148.98 -1.53 -8.46 16 3 C 0.08 1.49 4.67 71.98 0.34 1.83 16 4 C -0.10 -1.64 2.96 -11.54 -0.03 -1.68 16 5 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 6 C -0.13 -1.67 8.99 71.98 0.65 -1.02 16 7 C 0.52 11.17 7.15 87.66 0.63 11.80 16 8 O -0.58 -17.06 15.62 -3.01 -0.05 -17.11 16 9 N -0.69 -13.19 4.79 -438.30 -2.10 -15.29 16 10 C 0.15 3.54 3.36 45.89 0.15 3.70 16 11 H 0.09 2.43 7.65 -2.39 -0.02 2.41 16 12 C 0.03 0.69 6.17 86.45 0.53 1.22 16 13 N -0.50 -16.12 4.98 -886.04 -4.41 -20.53 16 14 C 0.05 1.68 5.32 85.56 0.46 2.13 16 15 C 0.44 21.04 7.63 87.66 0.67 21.71 16 16 O -0.61 -33.52 14.80 -3.07 -0.05 -33.57 16 17 N -0.57 -29.44 5.29 -306.98 -1.62 -31.07 16 18 C -0.33 -18.75 9.68 84.04 0.81 -17.94 16 19 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 20 C -0.01 -0.75 5.50 84.92 0.47 -0.29 16 21 N -0.92 -49.68 13.05 21.66 0.28 -49.39 16 22 Si 0.99 42.81 29.55 68.60 2.03 44.84 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 26 C 0.01 0.23 5.67 86.45 0.49 0.72 16 27 C 0.11 2.37 4.42 31.49 0.14 2.51 16 28 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 29 O -0.56 -8.36 11.50 -148.98 -1.71 -10.07 16 30 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.04 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.05 0.97 7.96 -2.38 -0.02 0.95 16 35 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 0.95 7.82 -2.38 -0.02 0.93 16 37 H 0.08 0.77 7.56 -2.39 -0.02 0.75 16 38 H 0.42 6.48 6.59 -92.71 -0.61 5.87 16 39 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 40 H 0.06 1.44 7.91 -2.39 -0.02 1.42 16 41 H 0.11 3.37 8.08 -2.39 -0.02 3.35 16 42 H 0.07 2.25 7.77 -2.39 -0.02 2.23 16 43 H 0.40 19.30 7.90 -92.71 -0.73 18.56 16 44 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 45 H 0.06 1.51 7.69 -2.39 -0.02 1.49 16 46 H 0.07 2.50 7.24 -2.39 -0.02 2.48 16 47 H 0.40 3.20 9.12 -74.06 -0.68 2.52 16 Total: -1.00 -72.91 387.53 -3.62 -76.53 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: -1.01 Total: 37.88 kcal Atomic # 6 Polarization: 19.69 SS G_CDS: 6.54 Total: 26.23 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -7.85 Total: -116.28 kcal Atomic # 8 Polarization: -65.87 SS G_CDS: -3.33 Total: -69.20 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -72.91 -3.62 -76.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219353967.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.251 kcal (2) G-P(sol) polarization free energy of solvation -72.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds