Wall clock time and date at job start Tue Mar 31 2020 04:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00141 * 2 1 4 4 C 1.53000 * 109.46953 * 293.95589 * 3 2 1 5 5 C 1.53002 * 109.46965 * 179.97438 * 4 3 2 6 6 N 1.46504 * 109.46951 * 179.97438 * 5 4 3 7 7 C 1.34781 * 119.99548 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00312 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99698 * 179.97438 * 7 6 5 10 10 H 1.09002 * 109.52246 * 54.87346 * 9 7 6 11 11 C 1.53144 * 109.52500 * 294.67482 * 9 7 6 12 12 O 1.43071 * 109.14949 * 184.78144 * 11 9 7 13 13 C 1.43078 * 113.59221 * 57.95681 * 12 11 9 14 14 C 1.53149 * 109.14994 * 302.04678 * 13 12 11 15 15 O 1.43069 * 109.52444 * 175.00367 * 9 7 6 16 16 C 1.46896 * 110.99947 * 123.95301 * 2 1 3 17 17 C 1.50700 * 109.46942 * 66.04504 * 16 2 1 18 18 O 1.21293 * 120.00282 * 359.97438 * 17 16 2 19 19 N 1.34777 * 120.00075 * 179.97438 * 17 16 2 20 20 C 1.37104 * 120.00173 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99666 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00001 * 180.27893 * 20 19 17 23 23 N 1.31414 * 119.99893 * 359.72318 * 22 20 19 24 24 Si 1.86801 * 119.99957 * 179.72309 * 22 20 19 25 25 H 1.48494 * 109.47230 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.46780 * 119.99924 * 24 22 20 27 27 H 1.48495 * 109.46909 * 239.99525 * 24 22 20 28 28 H 1.08999 * 109.47291 * 296.04597 * 1 2 3 29 29 H 1.09003 * 109.47182 * 56.04541 * 1 2 3 30 30 H 1.08998 * 109.47624 * 176.04616 * 1 2 3 31 31 H 1.08998 * 109.47091 * 53.95093 * 3 2 1 32 32 H 1.08996 * 109.47059 * 173.95504 * 3 2 1 33 33 H 1.09001 * 109.47532 * 299.99767 * 4 3 2 34 34 H 1.08996 * 109.47308 * 60.00067 * 4 3 2 35 35 H 1.09003 * 109.47404 * 300.00032 * 5 4 3 36 36 H 1.08996 * 109.46895 * 60.00008 * 5 4 3 37 37 H 0.96996 * 119.99975 * 0.02562 * 6 5 4 38 38 H 1.08997 * 109.52400 * 304.69017 * 11 9 7 39 39 H 1.09000 * 109.52175 * 64.88734 * 11 9 7 40 40 H 1.08998 * 109.52723 * 182.14138 * 13 12 11 41 41 H 1.08999 * 109.57461 * 61.97697 * 13 12 11 42 42 H 1.08997 * 109.52078 * 295.40556 * 14 13 12 43 43 H 1.08995 * 109.52140 * 175.21378 * 14 13 12 44 44 H 1.08994 * 109.47346 * 306.04810 * 16 2 1 45 45 H 1.08998 * 109.47279 * 186.04482 * 16 2 1 46 46 H 0.97000 * 120.00140 * 0.02562 * 19 17 16 47 47 H 0.97004 * 119.99542 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 -1.3182 5 6 2.1792 3.4860 -1.3180 6 7 1.8312 4.1427 -2.5805 7 6 2.2120 5.4159 -2.8052 8 8 2.8431 6.0178 -1.9624 9 6 1.8544 6.0912 -4.1041 10 1 0.7767 6.0372 -4.2582 11 6 2.5739 5.3905 -5.2603 12 8 2.3186 6.1045 -6.4735 13 6 2.7271 7.4750 -6.4282 14 6 2.0076 8.1757 -5.2720 15 8 2.2629 7.4616 -4.0588 16 6 1.9954 -0.7659 1.1376 17 6 1.6369 -2.2204 0.9728 18 8 1.0045 -2.5831 0.0034 19 7 2.0188 -3.1181 1.9027 20 6 1.6930 -4.4414 1.7526 21 1 1.1300 -4.7643 0.8894 22 6 2.0818 -5.3660 2.7141 23 7 2.7664 -4.9729 3.7648 24 14 1.6312 -7.1677 2.5135 25 1 0.8641 -7.3489 1.2550 26 1 2.8702 -7.9847 2.4606 27 1 0.8010 -7.6016 3.6657 28 1 -0.3634 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 1.5611 1.9273 0.8309 32 1 3.0797 1.3443 0.1082 33 1 2.0657 1.5015 -2.1492 34 1 0.5472 2.0845 -1.4265 35 1 1.7446 4.0417 -0.4871 36 1 3.2635 3.4593 -1.2096 37 1 1.3261 3.6614 -3.2544 38 1 3.6463 5.3745 -5.0657 39 1 2.2043 4.3694 -5.3539 40 1 2.4685 7.9635 -7.3677 41 1 3.8046 7.5300 -6.2736 42 1 0.9353 8.1918 -5.4666 43 1 2.3772 9.1968 -5.1785 44 1 1.5611 -0.3873 2.0627 45 1 3.0797 -0.6611 1.1756 46 1 2.5241 -2.8280 2.6782 47 1 3.0381 -5.6185 4.4358 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234225666.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:43 Heat of formation + Delta-G solvation = -150.795972 kcal Electronic energy + Delta-G solvation = -27394.371108 eV Core-core repulsion = 23191.836980 eV Total energy + Delta-G solvation = -4202.534128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.94136 -39.38729 -38.66691 -37.00413 -36.52883 -35.28135 -33.87269 -32.72239 -31.39239 -31.17905 -28.80104 -27.84099 -26.52310 -25.48920 -24.66839 -22.96795 -22.21497 -21.25706 -20.49623 -19.16154 -18.10751 -17.82352 -17.55356 -17.07404 -16.57442 -16.31572 -16.04941 -15.84304 -15.63917 -15.26988 -15.03867 -14.69783 -14.55613 -14.26153 -13.96103 -13.73895 -13.52005 -13.37863 -13.33870 -12.87205 -12.39028 -12.16697 -12.13615 -11.91889 -11.74873 -11.49390 -11.40097 -11.27694 -11.26527 -11.15795 -10.93793 -10.75389 -10.34463 -10.22840 -10.15762 -9.76356 -9.49066 -9.45271 -8.46916 -7.98246 -7.85788 -6.41867 -3.82670 2.14588 2.31452 3.08875 3.16094 3.26697 3.33660 3.39899 3.90132 3.91687 3.96713 4.19662 4.23781 4.30918 4.38868 4.51950 4.62983 4.77173 4.84805 4.88950 4.99036 5.00942 5.07369 5.15593 5.18816 5.25096 5.36887 5.45926 5.55758 5.67873 5.72994 5.89330 5.92640 5.96944 6.02735 6.08596 6.28248 6.31943 6.34395 6.55113 7.05086 7.24759 7.37448 7.55304 7.78815 8.06652 8.61868 9.18228 9.54644 10.06412 10.75950 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.036323 B = 0.001537 C = 0.001509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.671332 B =18209.806063 C =18555.132198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.519 5.519 3 C 0.057 3.943 4 C -0.128 4.128 5 C 0.121 3.879 6 N -0.725 5.725 7 C 0.521 3.479 8 O -0.514 6.514 9 C 0.037 3.963 10 H 0.095 0.905 11 C 0.037 3.963 12 O -0.372 6.372 13 C 0.020 3.980 14 C 0.023 3.977 15 O -0.351 6.351 16 C 0.046 3.954 17 C 0.444 3.556 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.014 0.986 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.403 0.597 38 H 0.070 0.930 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.112 0.888 44 H 0.048 0.952 45 H 0.088 0.912 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.377 24.568 -15.690 29.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.243 5.243 3 C -0.072 4.072 4 C -0.166 4.166 5 C -0.002 4.002 6 N -0.379 5.379 7 C 0.304 3.696 8 O -0.388 6.388 9 C -0.024 4.024 10 H 0.113 0.887 11 C -0.040 4.040 12 O -0.291 6.291 13 C -0.057 4.057 14 C -0.054 4.054 15 O -0.269 6.269 16 C -0.086 4.086 17 C 0.230 3.770 18 O -0.462 6.462 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.033 0.967 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.237 0.763 38 H 0.088 0.912 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.130 0.870 44 H 0.066 0.934 45 H 0.106 0.894 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.100 24.421 -15.978 29.204 hybrid contribution -0.374 -0.486 0.954 1.134 sum -1.475 23.935 -15.024 28.298 Atomic orbital electron populations 1.22594 0.86867 1.04633 0.98754 1.61552 1.08676 1.11174 1.42858 1.21996 1.00517 0.89020 0.95619 1.21791 1.01835 0.93262 0.99714 1.21394 1.00940 0.92748 0.85159 1.45916 1.58113 1.13187 1.20645 1.19897 0.79972 0.81847 0.87845 1.90757 1.38161 1.63921 1.45937 1.22590 1.00523 0.85042 0.94293 0.88689 1.23157 1.00658 0.96402 0.83833 1.88138 1.84018 1.22588 1.34328 1.23340 0.99513 0.82721 1.00142 1.23367 1.00510 0.96840 0.84658 1.88238 1.83784 1.19917 1.34938 1.21871 1.00711 0.94153 0.91825 1.19737 0.85421 0.86648 0.85225 1.90475 1.43933 1.80166 1.31666 1.41880 1.49431 1.07371 1.21473 1.19750 1.32943 0.82308 1.07799 0.87854 1.25261 0.96858 1.00570 0.95285 1.69624 1.38164 1.35676 1.10852 0.85801 0.78209 0.81940 0.78396 1.19232 1.20756 1.20806 0.96746 0.92147 0.88548 0.94850 0.90530 0.90020 0.90984 0.91245 0.90973 0.76293 0.91196 0.86905 0.87284 0.91673 0.91733 0.87041 0.93439 0.89358 0.77494 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.01 60.06 0.54 0.84 16 2 N -0.52 -8.23 4.50 -244.38 -1.10 -9.33 16 3 C 0.06 0.67 4.96 -3.82 -0.02 0.65 16 4 C -0.13 -1.17 5.26 -26.73 -0.14 -1.31 16 5 C 0.12 1.06 5.67 -4.04 -0.02 1.04 16 6 N -0.72 -5.51 5.52 -60.29 -0.33 -5.85 16 7 C 0.52 5.27 7.18 -10.98 -0.08 5.19 16 8 O -0.51 -7.61 16.51 -14.26 -0.24 -7.84 16 9 C 0.04 0.29 3.25 -27.81 -0.09 0.20 16 10 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 11 C 0.04 0.25 6.29 37.23 0.23 0.48 16 12 O -0.37 -2.79 10.85 -48.80 -0.53 -3.31 16 13 C 0.02 0.11 7.05 37.23 0.26 0.37 16 14 C 0.02 0.13 7.05 37.23 0.26 0.40 16 15 O -0.35 -3.44 10.03 -62.50 -0.63 -4.07 16 16 C 0.05 0.80 5.45 -4.98 -0.03 0.77 16 17 C 0.44 10.34 7.51 -10.98 -0.08 10.26 16 18 O -0.58 -15.30 13.88 5.55 0.08 -15.22 16 19 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 20 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 24 Si 0.93 20.93 29.55 -169.99 -5.02 15.90 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.78 6.30 -51.93 -0.33 0.45 16 30 H 0.10 1.85 5.88 -51.93 -0.31 1.54 16 31 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 32 H 0.08 0.84 7.93 -51.93 -0.41 0.43 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.63 6.47 -51.93 -0.34 0.30 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.40 1.93 8.41 -40.82 -0.34 1.58 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.11 0.49 8.08 -51.93 -0.42 0.07 16 40 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 45 H 0.09 1.40 7.93 -51.93 -0.41 0.99 16 46 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 47 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 386.41 15.07 5.82 5.82 Total: -1.00 -35.48 386.41 -8.14 -43.62 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.46 Total: 7.28 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 0.60 Total: 10.97 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.77 Total: -53.15 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -1.31 Total: -30.45 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.48 -8.14 -43.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234225666.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.172 kcal (2) G-P(sol) polarization free energy of solvation -35.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds