Wall clock time and date at job start Tue Mar 31 2020 04:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00141 * 2 1 4 4 C 1.53000 * 109.46953 * 293.95589 * 3 2 1 5 5 C 1.53002 * 109.46965 * 179.97438 * 4 3 2 6 6 N 1.46504 * 109.46951 * 179.97438 * 5 4 3 7 7 C 1.34781 * 119.99548 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00312 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99698 * 179.97438 * 7 6 5 10 10 H 1.09002 * 109.52246 * 54.87346 * 9 7 6 11 11 C 1.53144 * 109.52500 * 294.67482 * 9 7 6 12 12 O 1.43071 * 109.14949 * 184.78144 * 11 9 7 13 13 C 1.43078 * 113.59221 * 57.95681 * 12 11 9 14 14 C 1.53149 * 109.14994 * 302.04678 * 13 12 11 15 15 O 1.43069 * 109.52444 * 175.00367 * 9 7 6 16 16 C 1.46896 * 110.99947 * 123.95301 * 2 1 3 17 17 C 1.50700 * 109.46942 * 66.04504 * 16 2 1 18 18 O 1.21293 * 120.00282 * 359.97438 * 17 16 2 19 19 N 1.34777 * 120.00075 * 179.97438 * 17 16 2 20 20 C 1.37104 * 120.00173 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99666 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00001 * 180.27893 * 20 19 17 23 23 N 1.31414 * 119.99893 * 359.72318 * 22 20 19 24 24 Si 1.86801 * 119.99957 * 179.72309 * 22 20 19 25 25 H 1.48494 * 109.47230 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.46780 * 119.99924 * 24 22 20 27 27 H 1.48495 * 109.46909 * 239.99525 * 24 22 20 28 28 H 1.08999 * 109.47291 * 296.04597 * 1 2 3 29 29 H 1.09003 * 109.47182 * 56.04541 * 1 2 3 30 30 H 1.08998 * 109.47624 * 176.04616 * 1 2 3 31 31 H 1.08998 * 109.47091 * 53.95093 * 3 2 1 32 32 H 1.08996 * 109.47059 * 173.95504 * 3 2 1 33 33 H 1.09001 * 109.47532 * 299.99767 * 4 3 2 34 34 H 1.08996 * 109.47308 * 60.00067 * 4 3 2 35 35 H 1.09003 * 109.47404 * 300.00032 * 5 4 3 36 36 H 1.08996 * 109.46895 * 60.00008 * 5 4 3 37 37 H 0.96996 * 119.99975 * 0.02562 * 6 5 4 38 38 H 1.08997 * 109.52400 * 304.69017 * 11 9 7 39 39 H 1.09000 * 109.52175 * 64.88734 * 11 9 7 40 40 H 1.08998 * 109.52723 * 182.14138 * 13 12 11 41 41 H 1.08999 * 109.57461 * 61.97697 * 13 12 11 42 42 H 1.08997 * 109.52078 * 295.40556 * 14 13 12 43 43 H 1.08995 * 109.52140 * 175.21378 * 14 13 12 44 44 H 1.08994 * 109.47346 * 306.04810 * 16 2 1 45 45 H 1.08998 * 109.47279 * 186.04482 * 16 2 1 46 46 H 0.97000 * 120.00140 * 0.02562 * 19 17 16 47 47 H 0.97004 * 119.99542 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 -1.3182 5 6 2.1792 3.4860 -1.3180 6 7 1.8312 4.1427 -2.5805 7 6 2.2120 5.4159 -2.8052 8 8 2.8431 6.0178 -1.9624 9 6 1.8544 6.0912 -4.1041 10 1 0.7767 6.0372 -4.2582 11 6 2.5739 5.3905 -5.2603 12 8 2.3186 6.1045 -6.4735 13 6 2.7271 7.4750 -6.4282 14 6 2.0076 8.1757 -5.2720 15 8 2.2629 7.4616 -4.0588 16 6 1.9954 -0.7659 1.1376 17 6 1.6369 -2.2204 0.9728 18 8 1.0045 -2.5831 0.0034 19 7 2.0188 -3.1181 1.9027 20 6 1.6930 -4.4414 1.7526 21 1 1.1300 -4.7643 0.8894 22 6 2.0818 -5.3660 2.7141 23 7 2.7664 -4.9729 3.7648 24 14 1.6312 -7.1677 2.5135 25 1 0.8641 -7.3489 1.2550 26 1 2.8702 -7.9847 2.4606 27 1 0.8010 -7.6016 3.6657 28 1 -0.3634 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 1.5611 1.9273 0.8309 32 1 3.0797 1.3443 0.1082 33 1 2.0657 1.5015 -2.1492 34 1 0.5472 2.0845 -1.4265 35 1 1.7446 4.0417 -0.4871 36 1 3.2635 3.4593 -1.2096 37 1 1.3261 3.6614 -3.2544 38 1 3.6463 5.3745 -5.0657 39 1 2.2043 4.3694 -5.3539 40 1 2.4685 7.9635 -7.3677 41 1 3.8046 7.5300 -6.2736 42 1 0.9353 8.1918 -5.4666 43 1 2.3772 9.1968 -5.1785 44 1 1.5611 -0.3873 2.0627 45 1 3.0797 -0.6611 1.1756 46 1 2.5241 -2.8280 2.6782 47 1 3.0381 -5.6185 4.4358 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234225666.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:42 Heat of formation + Delta-G solvation = -179.758557 kcal Electronic energy + Delta-G solvation = -27395.627019 eV Core-core repulsion = 23191.836980 eV Total energy + Delta-G solvation = -4203.790040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.57277 -40.38463 -40.02531 -38.26596 -37.13653 -36.27123 -35.77978 -33.44447 -33.23965 -32.07506 -29.54820 -29.12070 -27.52229 -26.61685 -25.89809 -24.00494 -22.80549 -22.11219 -21.32152 -20.95810 -19.83847 -18.74260 -18.18309 -17.80004 -17.62868 -17.10153 -16.87016 -16.72505 -16.56108 -16.43035 -16.27206 -16.05782 -15.72811 -15.40045 -15.16737 -14.96110 -14.70912 -14.48600 -14.12798 -13.72681 -13.47720 -13.43655 -13.21876 -13.01386 -12.82815 -12.70853 -12.64939 -12.49596 -12.37172 -12.30907 -12.10172 -11.94057 -11.66153 -11.62161 -11.44779 -10.92107 -10.33130 -10.26209 -10.17255 -9.98127 -9.17677 -8.45090 -5.93568 1.37608 1.39093 1.42761 1.56831 1.67634 2.07839 2.29735 2.62625 2.75347 2.92841 3.22011 3.40604 3.45113 3.60945 3.82472 3.94119 3.98386 4.04105 4.11805 4.15543 4.23367 4.33461 4.42309 4.46482 4.50421 4.52984 4.56909 4.62772 4.66058 4.76817 4.77157 4.79093 4.81836 5.09622 5.21217 5.27509 5.37465 5.43219 5.83105 5.86506 5.90498 6.09343 6.25303 6.42869 6.62800 7.09162 7.15150 7.58996 8.14836 8.72562 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.036323 B = 0.001537 C = 0.001509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.671332 B =18209.806063 C =18555.132198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.536 5.536 3 C 0.056 3.944 4 C -0.114 4.114 5 C 0.127 3.873 6 N -0.709 5.709 7 C 0.520 3.480 8 O -0.568 6.568 9 C 0.040 3.960 10 H 0.117 0.883 11 C 0.040 3.960 12 O -0.385 6.385 13 C 0.016 3.984 14 C 0.019 3.981 15 O -0.386 6.386 16 C 0.056 3.944 17 C 0.442 3.558 18 O -0.613 6.613 19 N -0.576 5.576 20 C -0.331 4.331 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.272 1.272 27 H -0.272 1.272 28 H 0.025 0.975 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.419 0.581 38 H 0.058 0.942 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.126 0.874 44 H 0.066 0.934 45 H 0.109 0.891 46 H 0.395 0.605 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.754 25.268 -16.539 30.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.261 5.261 3 C -0.072 4.072 4 C -0.152 4.152 5 C 0.003 3.997 6 N -0.363 5.363 7 C 0.305 3.695 8 O -0.446 6.446 9 C -0.021 4.021 10 H 0.135 0.865 11 C -0.038 4.038 12 O -0.303 6.303 13 C -0.060 4.060 14 C -0.057 4.057 15 O -0.305 6.305 16 C -0.075 4.075 17 C 0.229 3.771 18 O -0.499 6.499 19 N -0.214 5.214 20 C -0.461 4.461 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.563 5.563 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.197 1.197 27 H -0.197 1.197 28 H 0.043 0.957 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.256 0.744 38 H 0.077 0.923 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.144 0.856 44 H 0.083 0.917 45 H 0.127 0.873 46 H 0.229 0.771 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.490 25.122 -16.847 30.285 hybrid contribution -0.272 -0.628 1.168 1.353 sum -1.762 24.495 -15.680 29.137 Atomic orbital electron populations 1.22486 0.86906 1.02465 1.00573 1.61512 1.08868 1.13522 1.42168 1.22091 1.00913 0.86811 0.97342 1.21638 1.02305 0.92894 0.98362 1.21247 1.00476 0.92450 0.85484 1.45780 1.57316 1.12539 1.20632 1.20351 0.78972 0.82083 0.88079 1.90730 1.40781 1.65289 1.47805 1.22656 1.01778 0.84486 0.93205 0.86509 1.23206 0.99980 0.97355 0.83219 1.88120 1.84122 1.23559 1.34525 1.23504 0.99286 0.82034 1.01169 1.23588 1.01390 0.97210 0.83498 1.88189 1.84331 1.20899 1.37060 1.21750 1.02113 0.90208 0.93402 1.20797 0.83645 0.88789 0.83860 1.90455 1.45071 1.81465 1.32937 1.41959 1.50142 1.07070 1.22223 1.19703 1.34356 0.84095 1.07923 0.90250 1.26028 0.96341 1.04301 0.94670 1.69685 1.38323 1.37090 1.11198 0.84869 0.78209 0.77001 0.78243 1.19739 1.19702 1.19717 0.95666 0.89422 0.92792 0.93729 0.89809 0.90033 0.90110 0.91783 0.91666 0.74358 0.92345 0.84556 0.84876 0.92109 0.90607 0.85626 0.91660 0.87294 0.77094 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 9.01 127.69 1.15 1.85 16 2 N -0.54 -16.12 4.50 -927.08 -4.17 -20.29 16 3 C 0.06 1.17 4.96 86.30 0.43 1.60 16 4 C -0.11 -1.79 5.26 30.59 0.16 -1.63 16 5 C 0.13 2.00 5.67 86.38 0.49 2.49 16 6 N -0.71 -9.48 5.52 -463.04 -2.56 -12.03 16 7 C 0.52 10.08 7.18 87.66 0.63 10.71 16 8 O -0.57 -16.97 16.51 15.91 0.26 -16.70 16 9 C 0.04 0.58 3.25 29.90 0.10 0.68 16 10 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 11 C 0.04 0.47 6.29 72.03 0.45 0.92 16 12 O -0.38 -5.07 10.85 -136.00 -1.48 -6.55 16 13 C 0.02 0.15 7.05 72.03 0.51 0.66 16 14 C 0.02 0.20 7.05 72.03 0.51 0.71 16 15 O -0.39 -7.33 10.03 -122.90 -1.23 -8.57 16 16 C 0.06 1.91 5.45 85.56 0.47 2.38 16 17 C 0.44 20.78 7.51 87.66 0.66 21.44 16 18 O -0.61 -33.26 13.88 -3.07 -0.04 -33.30 16 19 N -0.58 -29.48 5.29 -306.98 -1.62 -31.10 16 20 C -0.33 -18.75 9.68 84.04 0.81 -17.94 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.74 5.50 84.92 0.47 -0.28 16 23 N -0.92 -49.76 13.05 21.66 0.28 -49.48 16 24 Si 0.99 42.86 29.55 68.60 2.03 44.89 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 28 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.09 2.06 6.30 -2.39 -0.02 2.04 16 30 H 0.05 2.08 5.88 -2.39 -0.01 2.07 16 31 H 0.04 0.85 8.12 -2.39 -0.02 0.84 16 32 H 0.08 1.64 7.93 -2.39 -0.02 1.62 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 1.16 6.47 -2.39 -0.02 1.14 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.42 2.88 8.41 -92.71 -0.78 2.10 16 38 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.14 0.85 8.08 -2.39 -0.02 0.83 16 40 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.07 2.00 8.12 -2.39 -0.02 1.98 16 45 H 0.11 3.24 7.93 -2.39 -0.02 3.22 16 46 H 0.40 19.25 7.90 -92.71 -0.73 18.52 16 47 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -78.67 386.41 -2.22 -80.88 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: -0.52 Total: 28.67 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: 6.83 Total: 23.58 kcal Atomic # 7 Polarization: -104.83 SS G_CDS: -8.07 Total: -112.90 kcal Atomic # 8 Polarization: -62.63 SS G_CDS: -2.49 Total: -65.12 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -78.67 -2.22 -80.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234225666.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.876 kcal (2) G-P(sol) polarization free energy of solvation -78.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds