Wall clock time and date at job start Tue Mar 31 2020 05:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99795 * 2 1 4 4 H 1.48504 * 109.47152 * 269.99907 * 3 2 1 5 5 H 1.48496 * 109.47228 * 30.00071 * 3 2 1 6 6 H 1.48502 * 109.47203 * 150.00337 * 3 2 1 7 7 C 1.37876 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00106 * 187.85507 * 7 2 1 9 9 C 1.50699 * 119.99622 * 7.86288 * 7 2 1 10 10 H 1.09003 * 109.46944 * 185.27145 * 9 7 2 11 11 O 1.42898 * 109.47016 * 305.26511 * 9 7 2 12 12 C 1.35303 * 117.00035 * 270.00600 * 11 9 7 13 13 C 1.37745 * 119.18186 * 270.27255 * 12 11 9 14 14 O 1.35296 * 119.18428 * 359.97438 * 13 12 11 15 15 C 1.46794 * 121.62863 * 180.26552 * 13 12 11 16 16 O 1.21459 * 120.04437 * 179.70415 * 15 13 12 17 17 C 1.49149 * 119.89668 * 359.72702 * 15 13 12 18 18 O 1.20830 * 120.75950 * 180.02562 * 17 15 13 19 19 C 1.49512 * 118.47521 * 359.97438 * 17 15 13 20 20 O 1.20817 * 120.76994 * 180.02562 * 19 17 15 21 21 C 1.46789 * 119.18457 * 90.00301 * 12 11 9 22 22 O 1.21450 * 120.04969 * 0.02562 * 21 12 11 23 23 C 1.50699 * 109.47550 * 65.27155 * 9 7 2 24 24 C 1.38236 * 119.99413 * 269.46579 * 23 9 7 25 25 C 1.38233 * 119.99440 * 179.78665 * 24 23 9 26 26 C 1.38233 * 120.00367 * 0.44203 * 25 24 23 27 27 C 1.38231 * 119.99761 * 359.81503 * 26 25 24 28 28 C 1.38229 * 120.00027 * 89.74049 * 23 9 7 29 29 H 0.97002 * 120.00380 * 359.97438 * 1 2 3 30 30 H 0.96701 * 114.00238 * 270.26628 * 14 13 12 31 31 H 1.08002 * 120.00391 * 0.02562 * 24 23 9 32 32 H 1.08005 * 120.00087 * 180.27772 * 25 24 23 33 33 H 1.08004 * 120.00128 * 179.83153 * 26 25 24 34 34 H 1.08003 * 120.00013 * 180.02562 * 27 26 25 35 35 H 1.07991 * 120.00511 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0769 -1.1983 0.1284 9 6 1.2616 -2.4930 -0.1774 10 1 1.9534 -3.3267 -0.0566 11 8 0.2260 -2.5876 0.8027 12 6 0.5469 -3.1699 1.9811 13 6 0.3908 -4.5312 2.1220 14 8 -0.0799 -5.2528 1.0788 15 6 0.7168 -5.2175 3.3781 16 8 0.5631 -6.4186 3.4724 17 6 1.2364 -4.4374 4.5383 18 8 1.5100 -4.9864 5.5793 19 6 1.4120 -2.9608 4.3832 20 8 1.8303 -2.2888 5.2959 21 6 1.0582 -2.3362 3.0757 22 8 1.1886 -1.1390 2.9185 23 6 0.6545 -2.5399 -1.5559 24 6 -0.6247 -2.0592 -1.7644 25 6 -1.1799 -2.0981 -3.0297 26 6 -0.4594 -2.6260 -4.0848 27 6 0.8177 -3.1115 -3.8752 28 6 1.3747 -3.0686 -2.6107 29 1 -0.4851 0.8400 0.0004 30 1 -1.0432 -5.3348 1.0601 31 1 -1.1889 -1.6498 -0.9394 32 1 -2.1777 -1.7185 -3.1935 33 1 -0.8943 -2.6589 -5.0728 34 1 1.3808 -3.5235 -4.6996 35 1 2.3725 -3.4478 -2.4471 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234379423.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:06 Heat of formation + Delta-G solvation = -137.186322 kcal Electronic energy + Delta-G solvation = -28250.557945 eV Core-core repulsion = 23954.245294 eV Total energy + Delta-G solvation = -4296.312652 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.071 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.86324 -41.22395 -40.89501 -39.87160 -39.16425 -38.84387 -37.69924 -35.01974 -33.72151 -32.28709 -31.34382 -29.00483 -28.38164 -27.68013 -25.09917 -23.56165 -23.43526 -22.89101 -21.88837 -20.12505 -19.71442 -19.42820 -18.34248 -18.12364 -17.70861 -17.47871 -17.33344 -17.01236 -16.67672 -16.62804 -16.21984 -16.08018 -15.65162 -15.19016 -15.01143 -14.91325 -14.62844 -14.44337 -14.25389 -13.88711 -13.65279 -13.53471 -13.30373 -13.06566 -12.83050 -12.52617 -12.26878 -12.05483 -11.69583 -11.60575 -11.34916 -10.86601 -10.67460 -9.99104 -9.89978 -9.43174 -9.18395 -8.11161 -6.29578 -1.58125 -1.46231 0.45560 0.82315 0.93261 0.95824 1.10157 1.38099 1.42823 1.46464 1.84896 1.94782 2.31986 2.39176 3.03000 3.24044 3.30936 3.32306 3.53020 4.03112 4.33179 4.40135 4.42802 4.55558 4.62412 4.62832 4.79666 5.06027 5.15794 5.21372 5.43342 5.59444 5.63663 5.66119 5.88104 5.90329 5.95757 6.04400 6.25207 6.47027 6.54664 6.70024 7.01236 7.41076 8.82622 Molecular weight = 330.07amu Principal moments of inertia in cm(-1) A = 0.012078 B = 0.005579 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.793456 B = 5017.590254 C = 6816.948664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.073 3.927 3 Si 0.923 3.077 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.557 4.557 8 H 0.055 0.945 9 C 0.256 3.744 10 H 0.032 0.968 11 O -0.298 6.298 12 C 0.091 3.909 13 C 0.019 3.981 14 O -0.464 6.464 15 C 0.370 3.630 16 O -0.390 6.390 17 C 0.325 3.675 18 O -0.342 6.342 19 C 0.321 3.679 20 O -0.349 6.349 21 C 0.327 3.673 22 O -0.347 6.347 23 C -0.056 4.056 24 C -0.084 4.084 25 C -0.147 4.147 26 C -0.141 4.141 27 C -0.134 4.134 28 C -0.137 4.137 29 H 0.263 0.737 30 H 0.414 0.586 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.797 -7.665 -0.789 8.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.137 4.137 3 Si 0.750 3.250 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.592 4.592 8 H 0.073 0.927 9 C 0.205 3.795 10 H 0.050 0.950 11 O -0.214 6.214 12 C 0.040 3.960 13 C -0.031 4.031 14 O -0.277 6.277 15 C 0.243 3.757 16 O -0.262 6.262 17 C 0.191 3.809 18 O -0.208 6.208 19 C 0.187 3.813 20 O -0.215 6.215 21 C 0.197 3.803 22 O -0.215 6.215 23 C -0.056 4.056 24 C -0.102 4.102 25 C -0.165 4.165 26 C -0.159 4.159 27 C -0.152 4.152 28 C -0.155 4.155 29 H 0.073 0.927 30 H 0.276 0.724 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.181 -7.428 0.037 7.741 hybrid contribution 0.217 1.389 0.240 1.426 sum -1.963 -6.039 0.277 6.356 Atomic orbital electron populations 1.69997 1.06280 1.26988 1.43025 1.25226 0.95191 1.00572 0.92672 0.86118 0.79429 0.81520 0.77960 1.20172 1.21091 1.20126 1.21563 0.93663 0.91854 1.52104 0.92669 1.18997 0.83686 0.94504 0.82327 0.95034 1.86057 1.37629 1.77819 1.19906 1.22422 0.94320 0.89360 0.89864 1.21187 1.05690 0.87389 0.88833 1.84629 1.29142 1.71575 1.42364 1.22701 0.76904 0.88941 0.87126 1.90679 1.37818 1.15479 1.82248 1.25195 0.76634 0.90110 0.88946 1.90518 1.29872 1.72208 1.28169 1.25455 0.76314 0.90691 0.88843 1.90502 1.25267 1.65156 1.40601 1.23394 0.78545 0.89999 0.88410 1.90780 1.33553 1.16726 1.80471 1.19903 0.94348 0.96439 0.94957 1.21288 0.95415 0.96008 0.97515 1.21371 1.00518 1.01273 0.93337 1.21266 0.95171 1.00259 0.99187 1.21183 0.96150 1.01400 0.96490 1.20979 0.99833 1.01380 0.93278 0.92733 0.72444 0.85623 0.85819 0.84424 0.84311 0.86487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.02 9.50 21.45 0.20 -40.81 16 2 C 0.07 3.59 4.87 84.66 0.41 4.00 16 3 Si 0.92 41.15 29.54 68.60 2.03 43.18 16 4 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.56 -27.00 7.94 25.60 0.20 -26.80 16 8 H 0.06 2.73 7.83 -2.91 -0.02 2.71 16 9 C 0.26 11.09 2.62 29.10 0.08 11.17 16 10 H 0.03 1.32 7.85 -2.39 -0.02 1.30 16 11 O -0.30 -12.20 7.01 -60.40 -0.42 -12.62 16 12 C 0.09 3.05 5.74 24.39 0.14 3.19 16 13 C 0.02 0.51 6.90 24.39 0.17 0.67 16 14 O -0.46 -12.06 12.94 -60.32 -0.78 -12.84 16 15 C 0.37 9.22 7.19 27.44 0.20 9.42 16 16 O -0.39 -11.04 17.53 21.56 0.38 -10.67 16 17 C 0.33 8.18 7.30 28.25 0.21 8.39 16 18 O -0.34 -9.66 17.59 23.63 0.42 -9.24 16 19 C 0.32 9.13 7.30 28.25 0.21 9.34 16 20 O -0.35 -11.38 17.59 23.67 0.42 -10.96 16 21 C 0.33 11.18 7.19 27.45 0.20 11.38 16 22 O -0.35 -14.92 16.24 21.59 0.35 -14.57 16 23 C -0.06 -2.32 4.82 -19.87 -0.10 -2.42 16 24 C -0.08 -3.42 8.04 22.27 0.18 -3.24 16 25 C -0.15 -5.06 10.05 22.27 0.22 -4.84 16 26 C -0.14 -4.28 10.05 22.27 0.22 -4.06 16 27 C -0.13 -4.18 10.05 22.27 0.22 -3.95 16 28 C -0.14 -4.98 9.70 22.27 0.22 -4.77 16 29 H 0.26 12.73 8.31 -92.71 -0.77 11.96 16 30 H 0.41 7.05 9.06 -74.06 -0.67 6.38 16 31 H 0.13 5.66 5.97 -2.91 -0.02 5.65 16 32 H 0.12 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 34 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 35 H 0.12 3.95 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -59.97 330.26 5.89 -54.08 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 0.53 Total: 6.97 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 2.78 Total: 7.49 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.20 Total: -40.81 kcal Atomic # 8 Polarization: -71.26 SS G_CDS: 0.36 Total: -70.90 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -59.97 5.89 -54.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234379423.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.110 kcal (2) G-P(sol) polarization free energy of solvation -59.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds