Wall clock time and date at job start Tue Mar 31 2020 04:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00222 * 2 1 4 4 C 1.52999 * 109.46866 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47085 * 65.00619 * 4 3 2 6 6 C 1.34780 * 119.99619 * 269.99706 * 5 4 3 7 7 O 1.21587 * 120.00153 * 5.33497 * 6 5 4 8 8 N 1.34779 * 119.99706 * 185.32970 * 6 5 4 9 9 C 1.46500 * 119.99859 * 185.30427 * 8 6 5 10 10 C 1.50698 * 109.46935 * 180.02562 * 9 8 6 11 11 O 1.21290 * 120.00364 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99774 * 180.02562 * 10 9 8 13 13 C 1.37099 * 119.99736 * 179.97438 * 12 10 9 14 14 H 1.07997 * 120.00293 * 0.02562 * 13 12 10 15 15 C 1.38951 * 119.99668 * 179.97438 * 13 12 10 16 16 N 1.31409 * 120.00227 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99650 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47211 * 60.00351 * 17 15 13 19 19 H 1.48504 * 109.46593 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47076 * 299.99910 * 17 15 13 21 21 C 1.46496 * 120.00162 * 89.99386 * 5 4 3 22 22 C 1.53182 * 109.54696 * 295.87949 * 21 5 4 23 23 C 1.53094 * 109.16444 * 176.84772 * 22 21 5 24 24 O 1.42898 * 109.41398 * 302.39074 * 23 22 21 25 25 C 1.42911 * 114.09773 * 61.16042 * 24 23 22 26 26 C 1.53087 * 109.41220 * 298.84027 * 25 24 23 27 27 H 1.09004 * 109.46996 * 300.00241 * 1 2 3 28 28 H 1.09000 * 109.46809 * 59.99563 * 1 2 3 29 29 H 1.08996 * 109.47431 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46913 * 60.00119 * 3 2 1 31 31 H 1.08994 * 109.47299 * 300.00039 * 3 2 1 32 32 H 1.08995 * 109.47580 * 305.00367 * 4 3 2 33 33 H 1.09006 * 109.47107 * 185.00088 * 4 3 2 34 34 H 0.97003 * 120.00144 * 5.31770 * 8 6 5 35 35 H 1.09008 * 109.47120 * 300.00186 * 9 8 6 36 36 H 1.08996 * 109.47040 * 60.00363 * 9 8 6 37 37 H 0.96994 * 120.00230 * 359.97438 * 12 10 9 38 38 H 0.97004 * 120.00232 * 179.97438 * 16 15 13 39 39 H 1.09006 * 109.61482 * 175.65664 * 21 5 4 40 40 H 1.08994 * 109.52149 * 296.75521 * 22 21 5 41 41 H 1.09005 * 109.51708 * 56.94351 * 22 21 5 42 42 H 1.08994 * 109.47774 * 182.41220 * 23 22 21 43 43 H 1.08997 * 109.47668 * 62.37651 * 23 22 21 44 44 H 1.09000 * 109.47820 * 178.85814 * 25 24 23 45 45 H 1.09000 * 109.48805 * 58.82540 * 25 24 23 46 46 H 1.08999 * 109.52438 * 297.70105 * 26 25 24 47 47 H 1.09006 * 109.52206 * 177.51272 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0958 -0.7761 -1.3332 7 8 3.7454 -1.4759 -0.4027 8 7 4.6033 -1.3404 -2.4471 9 6 4.6256 -2.7987 -2.5844 10 6 5.2391 -3.1690 -3.9102 11 8 5.6197 -2.3002 -4.6661 12 7 5.3638 -4.4656 -4.2563 13 6 5.9214 -4.8025 -5.4626 14 1 6.2611 -4.0289 -6.1353 15 6 6.0505 -6.1393 -5.8192 16 7 5.6377 -7.0805 -5.0004 17 14 6.8097 -6.5982 -7.4632 18 1 8.1970 -6.0731 -7.5316 19 1 6.8319 -8.0765 -7.6025 20 1 6.0028 -6.0100 -8.5624 21 6 4.2882 1.3997 -2.4130 22 6 3.0205 2.1222 -2.8794 23 6 3.3717 3.0525 -4.0434 24 8 4.3798 3.9754 -3.6264 25 6 5.6048 3.3590 -3.2241 26 6 5.3433 2.4410 -2.0272 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8463 -0.8899 32 1 3.8508 0.5683 0.8426 33 1 3.9786 2.1764 0.0902 34 1 4.9539 -0.7808 -3.1577 35 1 5.2174 -3.2307 -1.7773 36 1 3.6072 -3.1840 -2.5347 37 1 5.0591 -5.1604 -3.6520 38 1 5.7275 -8.0137 -5.2495 39 1 4.6703 0.7755 -3.2208 40 1 2.2838 1.3894 -3.2082 41 1 2.6111 2.7075 -2.0559 42 1 2.4816 3.6012 -4.3513 43 1 3.7431 2.4623 -4.8810 44 1 6.3234 4.1284 -2.9419 45 1 6.0056 2.7728 -4.0510 46 1 4.9808 3.0327 -1.1866 47 1 6.2678 1.9361 -1.7466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001312662328.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:05 Heat of formation + Delta-G solvation = -143.917732 kcal Electronic energy + Delta-G solvation = -29667.410803 eV Core-core repulsion = 25465.174938 eV Total energy + Delta-G solvation = -4202.235865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -40.62944 -39.07119 -38.25897 -37.66754 -35.83008 -34.42279 -33.64306 -32.10112 -31.41128 -31.36509 -30.01593 -27.36926 -26.26788 -24.86718 -24.46477 -23.94486 -22.58999 -20.82244 -19.61735 -19.37539 -18.46491 -17.91837 -16.92364 -16.43516 -16.28097 -15.86120 -15.66151 -15.56143 -15.34324 -14.93260 -14.78732 -14.64022 -14.32166 -14.22907 -14.08127 -13.57138 -13.53344 -13.44028 -12.74504 -12.61655 -12.35647 -12.16114 -12.09312 -11.78991 -11.61543 -11.56900 -11.36668 -11.21973 -11.08990 -10.98263 -10.66762 -10.49878 -10.29805 -10.01220 -9.65342 -9.60923 -9.57418 -8.81354 -8.59726 -8.41291 -8.07945 -6.49499 -3.91572 2.71408 3.14611 3.22175 3.25910 3.49752 3.62392 3.76235 3.78816 4.01581 4.17172 4.38725 4.51803 4.70831 4.75859 4.87003 4.92520 4.98800 5.02928 5.17597 5.19494 5.20560 5.24487 5.29321 5.31928 5.32749 5.41821 5.44829 5.57611 5.64375 5.72260 5.75978 5.83116 5.96452 5.98464 6.07280 6.12318 6.53249 6.85587 6.93543 7.09055 7.19774 7.47239 7.94319 8.26447 8.47593 8.93213 9.06397 9.41956 9.89926 10.67364 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.012759 B = 0.003107 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.027997 B = 9008.876696 C =10450.883424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.361 6.361 3 C 0.036 3.964 4 C 0.135 3.865 5 N -0.622 5.622 6 C 0.709 3.291 7 O -0.573 6.573 8 N -0.729 5.729 9 C 0.129 3.871 10 C 0.430 3.570 11 O -0.600 6.600 12 N -0.549 5.549 13 C -0.305 4.305 14 H 0.104 0.896 15 C 0.026 3.974 16 N -0.895 5.895 17 Si 0.933 3.067 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.273 1.273 21 C 0.138 3.862 22 C -0.167 4.167 23 C 0.061 3.939 24 O -0.383 6.383 25 C 0.062 3.938 26 C -0.167 4.167 27 H 0.035 0.965 28 H 0.034 0.966 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.403 0.597 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.396 0.604 38 H 0.275 0.725 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.057 0.943 44 H 0.097 0.903 45 H 0.057 0.943 46 H 0.077 0.923 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.294 19.692 8.114 22.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C -0.042 4.042 4 C 0.011 3.989 5 N -0.359 5.359 6 C 0.410 3.590 7 O -0.449 6.449 8 N -0.389 5.389 9 C 0.001 3.999 10 C 0.215 3.785 11 O -0.487 6.487 12 N -0.184 5.184 13 C -0.435 4.435 14 H 0.122 0.878 15 C -0.177 4.177 16 N -0.535 5.535 17 Si 0.760 3.240 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.198 1.198 21 C 0.033 3.967 22 C -0.206 4.206 23 C -0.016 4.016 24 O -0.302 6.302 25 C -0.015 4.015 26 C -0.205 4.205 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.242 0.758 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.114 0.886 43 H 0.075 0.925 44 H 0.115 0.885 45 H 0.075 0.925 46 H 0.095 0.905 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.213 19.479 8.271 22.056 hybrid contribution 0.046 -0.592 -0.769 0.971 sum -6.167 18.888 7.502 21.238 Atomic orbital electron populations 1.22706 0.82141 1.02614 0.99109 1.88200 1.18423 1.26190 1.95105 1.23217 0.94976 0.85993 1.00011 1.21299 0.91895 0.98611 0.87088 1.47003 1.71889 1.04345 1.12642 1.15720 0.78616 0.81523 0.83121 1.90925 1.55288 1.60522 1.38161 1.44994 1.66115 1.07451 1.20386 1.20754 1.01775 0.80194 0.97221 1.19791 0.86113 0.83995 0.88573 1.90471 1.55794 1.48496 1.53921 1.41780 1.52931 1.05204 1.18466 1.19671 1.36601 0.92483 0.94732 0.87780 1.25315 0.97403 0.95291 0.99662 1.69608 1.46218 1.00917 1.36749 0.85885 0.79592 0.77235 0.81311 1.19796 1.20860 1.19808 1.21127 0.94633 0.92229 0.88729 1.22750 0.98496 0.99566 0.99751 1.22600 0.91775 0.91820 0.95411 1.87924 1.23456 1.33405 1.85417 1.22585 0.86629 0.96730 0.95589 1.22619 1.00088 0.97960 0.99855 0.94637 0.94707 0.89797 0.93168 0.92924 0.89017 0.89296 0.75752 0.90082 0.90211 0.77011 0.91553 0.88867 0.90248 0.90378 0.88604 0.92500 0.88495 0.92473 0.90458 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.36 -5.07 9.27 -48.46 -0.45 -5.52 16 3 C 0.04 0.38 6.05 37.16 0.22 0.60 16 4 C 0.13 1.46 5.37 -4.04 -0.02 1.44 16 5 N -0.62 -8.02 2.39 -171.59 -0.41 -8.43 16 6 C 0.71 12.15 7.96 -86.91 -0.69 11.46 16 7 O -0.57 -11.65 14.92 -7.94 -0.12 -11.77 16 8 N -0.73 -12.90 5.41 -66.41 -0.36 -13.25 16 9 C 0.13 2.49 6.16 -5.19 -0.03 2.46 16 10 C 0.43 9.98 7.85 -10.98 -0.09 9.90 16 11 O -0.60 -15.34 15.24 5.55 0.08 -15.26 16 12 N -0.55 -13.74 5.29 -10.96 -0.06 -13.80 16 13 C -0.31 -8.33 9.68 -14.93 -0.14 -8.47 16 14 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 15 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 16 N -0.89 -24.02 13.05 55.50 0.72 -23.30 16 17 Si 0.93 20.58 29.55 -169.99 -5.02 15.55 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 C 0.14 1.48 2.60 -67.75 -0.18 1.31 16 22 C -0.17 -1.57 4.68 -26.59 -0.12 -1.70 16 23 C 0.06 0.55 6.84 37.21 0.25 0.80 16 24 O -0.38 -3.84 10.77 -35.23 -0.38 -4.22 16 25 C 0.06 0.53 6.84 37.20 0.25 0.78 16 26 C -0.17 -1.46 5.38 -26.60 -0.14 -1.60 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.50 5.27 -51.93 -0.27 0.23 16 32 H 0.09 1.16 7.50 -51.93 -0.39 0.77 16 33 H 0.09 0.69 6.15 -51.93 -0.32 0.38 16 34 H 0.40 6.96 4.88 -40.82 -0.20 6.77 16 35 H 0.08 1.53 8.14 -51.92 -0.42 1.10 16 36 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.40 9.59 7.90 -40.82 -0.32 9.26 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.09 1.15 5.50 -51.93 -0.29 0.87 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.08 0.68 5.86 -51.93 -0.30 0.37 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.61 6.40 -51.93 -0.33 0.28 16 47 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 375.76 15.07 5.66 5.66 Total: -1.00 -33.19 375.76 -7.01 -40.19 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -7.01 Total: 15.13 kcal Atomic # 6 Polarization: 18.68 SS G_CDS: 0.33 Total: 19.01 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.10 Total: -58.79 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -0.86 Total: -36.76 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.19 -7.01 -40.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312662328.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.726 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds