Wall clock time and date at job start Tue Mar 31 2020 05:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00262 * 2 1 4 4 C 1.52996 * 109.47372 * 180.02562 * 3 2 1 5 5 O 1.42894 * 109.47111 * 64.99855 * 4 3 2 6 6 C 1.42908 * 113.99925 * 180.02562 * 5 4 3 7 7 C 1.52993 * 109.46959 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47078 * 64.64703 * 7 6 5 9 9 C 1.46961 * 110.99823 * 75.70807 * 8 7 6 10 10 C 1.53049 * 109.36208 * 183.18930 * 9 8 7 11 11 N 1.46951 * 109.36351 * 301.59326 * 10 9 8 12 12 C 1.46900 * 110.99974 * 183.18928 * 11 10 9 13 13 C 1.50702 * 109.47140 * 170.00132 * 12 11 10 14 14 O 1.21282 * 119.99975 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99986 * 180.02562 * 13 12 11 16 16 C 1.46503 * 120.00158 * 179.97438 * 15 13 12 17 17 C 1.50694 * 109.47528 * 179.72233 * 16 15 13 18 18 H 1.08003 * 120.00162 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00300 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00278 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99852 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46787 * 90.00694 * 21 19 17 23 23 H 1.48504 * 109.46988 * 210.00079 * 21 19 17 24 24 H 1.48492 * 109.47406 * 330.00365 * 21 19 17 25 25 C 1.46962 * 110.88144 * 59.32508 * 11 10 9 26 26 C 1.46961 * 110.99966 * 199.50115 * 8 7 6 27 27 H 1.09003 * 109.46996 * 300.00313 * 1 2 3 28 28 H 1.09001 * 109.47189 * 60.00053 * 1 2 3 29 29 H 1.08997 * 109.47043 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47009 * 59.99648 * 3 2 1 31 31 H 1.08996 * 109.47189 * 300.00263 * 3 2 1 32 32 H 1.09009 * 109.46801 * 304.99554 * 4 3 2 33 33 H 1.09004 * 109.47345 * 185.00167 * 4 3 2 34 34 H 1.09000 * 109.46684 * 59.99740 * 6 5 4 35 35 H 1.08992 * 109.46962 * 300.00191 * 6 5 4 36 36 H 1.09000 * 109.47835 * 304.64620 * 7 6 5 37 37 H 1.09002 * 109.47016 * 184.64506 * 7 6 5 38 38 H 1.08993 * 109.49146 * 63.22005 * 9 8 7 39 39 H 1.09006 * 109.48607 * 303.15047 * 9 8 7 40 40 H 1.09004 * 109.48788 * 181.62967 * 10 9 8 41 41 H 1.09002 * 109.49089 * 61.56062 * 10 9 8 42 42 H 1.08997 * 109.47196 * 50.00002 * 12 11 10 43 43 H 1.09004 * 109.47558 * 289.99788 * 12 11 10 44 44 H 0.97003 * 120.00656 * 359.72180 * 15 13 12 45 45 H 1.09003 * 109.47261 * 299.72578 * 16 15 13 46 46 H 1.09006 * 109.46977 * 59.72272 * 16 15 13 47 47 H 0.97002 * 120.00301 * 179.97438 * 20 19 17 48 48 H 1.08993 * 109.48890 * 60.64343 * 25 11 10 49 49 H 1.09006 * 109.48988 * 180.71378 * 25 11 10 50 50 H 1.09002 * 109.48978 * 296.78020 * 26 8 7 51 51 H 1.08995 * 109.48565 * 56.84463 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9648 0.5796 -1.2219 6 6 5.3812 0.4190 -1.3245 7 6 5.7245 -0.2352 -2.6642 8 7 5.3478 0.6671 -3.7606 9 6 6.3100 1.7705 -3.8886 10 6 5.8404 2.7285 -4.9860 11 7 5.7140 1.9942 -6.2525 12 6 5.3374 2.8965 -7.3489 13 6 5.4559 2.1676 -8.6626 14 8 5.8180 1.0103 -8.6834 15 7 5.1595 2.8018 -9.8143 16 6 5.2753 2.0934 -11.0914 17 6 4.8828 3.0171 -12.2156 18 1 4.5781 4.0306 -12.0004 19 6 4.9128 2.5683 -13.5189 20 7 4.5708 3.3746 -14.5000 21 14 5.4405 0.8155 -13.8913 22 1 4.2512 -0.0736 -13.8744 23 1 6.0776 0.7646 -15.2318 24 1 6.4121 0.3622 -12.8639 25 6 4.7519 0.8907 -6.1246 26 6 5.2215 -0.0673 -5.0272 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6887 1.8463 -0.8899 32 1 3.8514 0.5681 0.8411 33 1 3.9786 2.1764 0.0890 34 1 5.7350 -0.2135 -0.5104 35 1 5.8628 1.3948 -1.2622 36 1 5.1776 -1.1731 -2.7614 37 1 6.7955 -0.4329 -2.7081 38 1 7.2896 1.3704 -4.1500 39 1 6.3766 2.3067 -2.9419 40 1 6.5674 3.5323 -5.1026 41 1 4.8731 3.1495 -4.7117 42 1 6.0009 3.7612 -7.3520 43 1 4.3086 3.2284 -7.2092 44 1 4.8660 3.7262 -9.7974 45 1 6.3051 1.7657 -11.2331 46 1 4.6153 1.2259 -11.0868 47 1 4.5922 3.0590 -15.4170 48 1 3.7723 1.2909 -5.8632 49 1 4.6853 0.3546 -7.0713 50 1 6.1888 -0.4883 -5.3015 51 1 4.4946 -0.8710 -4.9106 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326710985.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:16 Heat of formation + Delta-G solvation = -106.612556 kcal Electronic energy + Delta-G solvation = -28344.112827 eV Core-core repulsion = 24279.327731 eV Total energy + Delta-G solvation = -4064.785096 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.78296 -38.86252 -38.35390 -37.38155 -35.34762 -34.18718 -32.35292 -31.43456 -30.91015 -29.87514 -28.46998 -26.95110 -26.50809 -24.48217 -23.56640 -22.86362 -22.03579 -21.63606 -19.87242 -19.75806 -17.34809 -17.27336 -17.08825 -16.57417 -16.03456 -15.83086 -15.72417 -15.59578 -15.33006 -14.91425 -14.87936 -14.72959 -14.37778 -14.20606 -13.85256 -13.62181 -13.55510 -13.07630 -12.74598 -12.55587 -12.38213 -12.31654 -12.11456 -12.03156 -11.81360 -11.70046 -11.46716 -11.31172 -11.20116 -11.00649 -10.80837 -10.76686 -10.62768 -10.04080 -9.95580 -9.81442 -9.48323 -9.11934 -8.76443 -8.44108 -8.21982 -8.06967 -6.20547 -4.22665 3.26104 3.29453 3.34371 3.36567 3.43272 3.43445 3.62379 3.73965 4.28461 4.34879 4.60411 4.73212 4.76251 4.80505 4.93113 4.97468 4.99146 5.02866 5.06083 5.11517 5.13604 5.14803 5.20659 5.24862 5.33606 5.35504 5.37704 5.41486 5.45013 5.50492 5.55660 5.57941 5.64157 5.74903 5.84805 6.06361 6.16292 6.75268 6.78185 6.84805 6.89694 7.01210 7.09305 7.11145 7.16582 7.27141 7.41695 8.16427 8.54553 8.77013 8.99055 9.39902 10.91384 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.018892 B = 0.001925 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.729612 B =14542.190845 C =15047.177967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.064 3.936 4 C 0.063 3.937 5 O -0.362 6.362 6 C 0.070 3.930 7 C 0.056 3.944 8 N -0.532 5.532 9 C 0.058 3.942 10 C 0.058 3.942 11 N -0.521 5.521 12 C 0.037 3.963 13 C 0.501 3.499 14 O -0.542 6.542 15 N -0.708 5.708 16 C 0.222 3.778 17 C -0.543 4.543 18 H 0.079 0.921 19 C 0.077 3.923 20 N -0.893 5.893 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.261 1.261 25 C 0.054 3.946 26 C 0.063 3.937 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.041 0.959 42 H 0.100 0.900 43 H 0.060 0.940 44 H 0.395 0.605 45 H 0.025 0.975 46 H 0.019 0.981 47 H 0.267 0.733 48 H 0.036 0.964 49 H 0.102 0.898 50 H 0.043 0.957 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.910 -2.314 32.343 32.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C -0.013 4.013 4 C -0.014 4.014 5 O -0.280 6.280 6 C -0.007 4.007 7 C -0.072 4.072 8 N -0.257 5.257 9 C -0.070 4.070 10 C -0.070 4.070 11 N -0.246 5.246 12 C -0.094 4.094 13 C 0.286 3.714 14 O -0.420 6.420 15 N -0.358 5.358 16 C 0.100 3.900 17 C -0.581 4.581 18 H 0.097 0.903 19 C -0.127 4.127 20 N -0.530 5.530 21 Si 0.704 3.296 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.185 1.185 25 C -0.074 4.074 26 C -0.065 4.065 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.060 0.940 42 H 0.118 0.882 43 H 0.078 0.922 44 H 0.229 0.771 45 H 0.043 0.957 46 H 0.037 0.963 47 H 0.077 0.923 48 H 0.054 0.946 49 H 0.120 0.880 50 H 0.062 0.938 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.685 -3.366 31.940 32.161 hybrid contribution 0.040 0.092 -0.137 0.170 sum -1.645 -3.274 31.803 32.013 Atomic orbital electron populations 1.22744 0.81068 1.02855 0.99878 1.87952 1.19587 1.27357 1.95370 1.22542 0.92485 0.85487 1.00789 1.22463 0.93371 0.97410 0.88160 1.88083 1.21397 1.81675 1.36868 1.22497 0.82328 0.99219 0.96693 1.22099 0.98734 0.96329 0.90046 1.62129 1.47859 1.11013 1.04703 1.22175 0.93857 0.93003 0.98005 1.22149 1.00459 0.95673 0.88719 1.61804 1.49202 1.10383 1.03259 1.21967 1.00956 0.95952 0.90571 1.20365 0.78222 0.87510 0.85346 1.90612 1.46952 1.17192 1.87241 1.46176 1.66651 1.16142 1.06788 1.19462 0.96871 0.93270 0.80407 1.21104 1.47210 0.99852 0.89958 0.90273 1.24802 0.94166 0.97816 0.95891 1.69881 1.47369 1.35936 0.99833 0.86809 0.79850 0.84811 0.78174 1.19868 1.20926 1.18482 1.22340 0.92520 0.92673 0.99874 1.22136 1.00649 0.95791 0.87912 0.94308 0.93887 0.89602 0.92121 0.92232 0.92905 0.92101 0.93274 0.93503 0.89905 0.93057 0.93971 0.90674 0.90369 0.94032 0.88213 0.92187 0.77122 0.95735 0.96264 0.92281 0.94614 0.88013 0.93842 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.85 10.67 -40.09 -0.43 -4.28 16 3 C 0.06 0.50 6.32 37.16 0.23 0.73 16 4 C 0.06 0.49 6.32 37.16 0.23 0.72 16 5 O -0.36 -3.86 10.25 -40.09 -0.41 -4.27 16 6 C 0.07 0.58 6.13 37.15 0.23 0.81 16 7 C 0.06 0.52 5.39 -3.83 -0.02 0.50 16 8 N -0.53 -6.01 4.58 -234.47 -1.07 -7.08 16 9 C 0.06 0.60 5.43 -3.77 -0.02 0.58 16 10 C 0.06 0.65 5.61 -3.77 -0.02 0.63 16 11 N -0.52 -7.41 4.45 -235.91 -1.05 -8.46 16 12 C 0.04 0.52 5.45 -4.97 -0.03 0.49 16 13 C 0.50 9.55 7.53 -10.98 -0.08 9.47 16 14 O -0.54 -12.27 14.34 5.56 0.08 -12.19 16 15 N -0.71 -14.34 5.55 -61.47 -0.34 -14.68 16 16 C 0.22 5.50 4.50 -5.19 -0.02 5.47 16 17 C -0.54 -14.97 9.83 -34.44 -0.34 -15.31 16 18 H 0.08 2.26 7.84 -52.48 -0.41 1.85 16 19 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 20 N -0.89 -26.61 13.96 55.43 0.77 -25.83 16 21 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 25 C 0.05 0.78 5.26 -3.76 -0.02 0.76 16 26 C 0.06 0.80 5.57 -3.77 -0.02 0.78 16 27 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.05 0.35 6.74 -51.93 -0.35 0.00 16 36 H 0.08 0.80 7.85 -51.93 -0.41 0.40 16 37 H 0.05 0.42 8.00 -51.93 -0.42 0.01 16 38 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.64 6.72 -51.93 -0.35 0.29 16 40 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 41 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 1.20 8.03 -51.93 -0.42 0.78 16 43 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 44 H 0.40 7.01 8.32 -40.82 -0.34 6.67 16 45 H 0.02 0.65 7.20 -51.93 -0.37 0.27 16 46 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 47 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 48 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.10 1.75 5.85 -51.93 -0.30 1.45 16 50 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.08 0.93 8.00 -51.93 -0.42 0.52 16 LS Contribution 406.12 15.07 6.12 6.12 Total: -1.00 -34.31 406.12 -9.12 -43.43 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -9.26 Total: 1.25 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 1.14 Total: 9.05 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -1.69 Total: -56.06 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.76 Total: -20.74 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.31 -9.12 -43.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326710985.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.182 kcal (2) G-P(sol) polarization free energy of solvation -34.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds