Wall clock time and date at job start Tue Mar 31 2020 04:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99741 * 2 1 4 4 C 1.52999 * 109.46746 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.47063 * 65.00410 * 4 3 2 6 6 C 1.42902 * 114.00238 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.47411 * 179.97438 * 6 5 4 8 8 H 1.09002 * 110.91343 * 308.89955 * 7 6 5 9 9 C 1.55157 * 111.00585 * 184.99852 * 7 6 5 10 10 C 1.54321 * 103.10033 * 206.50978 * 9 7 6 11 11 N 1.47018 * 107.27524 * 22.10414 * 10 9 7 12 12 C 1.34774 * 125.65048 * 181.02410 * 11 10 9 13 13 O 1.21588 * 120.00072 * 180.02562 * 12 11 10 14 14 N 1.34770 * 120.00200 * 0.02562 * 12 11 10 15 15 C 1.46503 * 120.00227 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.46983 * 180.02562 * 15 14 12 17 17 O 1.21286 * 120.00182 * 0.02562 * 16 15 14 18 18 N 1.34782 * 119.99642 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99500 * 180.02562 * 18 16 15 20 20 H 1.07992 * 120.00291 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99766 * 180.02562 * 19 18 16 22 22 N 1.31416 * 120.00190 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00108 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47515 * 89.99659 * 23 21 19 25 25 H 1.48501 * 109.47375 * 210.00364 * 23 21 19 26 26 H 1.48506 * 109.46928 * 329.99636 * 23 21 19 27 27 C 1.47434 * 108.70129 * 1.05955 * 11 10 9 28 28 H 1.09001 * 109.47050 * 59.99772 * 1 2 3 29 29 H 1.08998 * 109.47594 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47326 * 300.00241 * 1 2 3 31 31 H 1.08997 * 109.47257 * 60.00022 * 3 2 1 32 32 H 1.08998 * 109.47394 * 299.99720 * 3 2 1 33 33 H 1.09002 * 109.47530 * 305.00285 * 4 3 2 34 34 H 1.08995 * 109.46897 * 184.99950 * 4 3 2 35 35 H 1.08994 * 109.46973 * 59.99272 * 6 5 4 36 36 H 1.09000 * 109.46742 * 299.99750 * 6 5 4 37 37 H 1.09002 * 110.72219 * 88.05675 * 9 7 6 38 38 H 1.09003 * 110.71618 * 324.96287 * 9 7 6 39 39 H 1.09008 * 109.88104 * 141.52028 * 10 9 7 40 40 H 1.08999 * 109.88234 * 262.52704 * 10 9 7 41 41 H 0.97007 * 120.00084 * 0.02562 * 14 12 11 42 42 H 1.08994 * 109.47361 * 300.00808 * 15 14 12 43 43 H 1.08999 * 109.46611 * 60.01143 * 15 14 12 44 44 H 0.96994 * 120.00279 * 359.97438 * 18 16 15 45 45 H 0.97005 * 119.99983 * 179.97438 * 22 21 19 46 46 H 1.09000 * 110.36877 * 94.71035 * 27 11 10 47 47 H 1.09001 * 110.36202 * 216.92811 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5793 -1.2202 6 6 5.3821 0.4187 -1.3217 7 6 5.7265 -0.2359 -2.6609 8 1 5.1357 -1.1387 -2.8161 9 6 7.2447 -0.5416 -2.7564 10 6 7.5110 -0.5197 -4.2763 11 7 6.4376 0.2709 -4.8962 12 6 6.2998 0.5102 -6.2154 13 8 5.3690 1.1812 -6.6175 14 7 7.1937 0.0058 -7.0888 15 6 7.0436 0.2656 -8.5228 16 6 8.1641 -0.4054 -9.2747 17 8 9.0050 -1.0386 -8.6722 18 7 8.2318 -0.3018 -10.6168 19 6 9.2508 -0.9126 -11.3009 20 1 9.9995 -1.4764 -10.7644 21 6 9.3209 -0.8054 -12.6845 22 7 10.2980 -1.3904 -13.3403 23 14 8.0271 0.1717 -13.6123 24 1 8.4641 1.5861 -13.7291 25 1 7.8496 -0.4053 -14.9691 26 1 6.7387 0.1108 -12.8763 27 6 5.5372 0.7592 -3.8357 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5685 0.8427 34 1 3.9784 2.1765 0.0902 35 1 5.7353 -0.2135 -0.5071 36 1 5.8638 1.3945 -1.2593 37 1 7.4673 -1.5241 -2.3400 38 1 7.8259 0.2302 -2.2518 39 1 8.4765 -0.0552 -4.4768 40 1 7.5001 -1.5363 -4.6693 41 1 7.9361 -0.5298 -6.7680 42 1 6.0879 -0.1306 -8.8657 43 1 7.0772 1.3401 -8.7028 44 1 7.5591 0.2043 -11.0987 45 1 10.3467 -1.3158 -14.3062 46 1 5.8242 1.7645 -3.5276 47 1 4.5036 0.7496 -4.1816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329235300.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:19 Heat of formation + Delta-G solvation = -148.311223 kcal Electronic energy + Delta-G solvation = -27488.666110 eV Core-core repulsion = 23286.239729 eV Total energy + Delta-G solvation = -4202.426381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.28653 -39.01472 -38.52120 -37.88526 -37.00237 -34.47537 -33.72450 -32.58952 -31.76942 -30.66178 -29.33721 -27.94522 -26.67729 -25.66111 -24.15728 -23.11831 -22.84577 -20.71283 -19.80910 -19.61775 -18.76699 -17.89283 -17.40505 -17.24577 -16.55246 -15.92040 -15.82294 -15.73990 -15.60807 -15.31557 -15.01318 -14.95247 -14.29924 -14.18754 -13.81818 -13.74284 -13.19637 -13.12893 -12.94054 -12.81308 -12.53247 -12.47115 -12.31301 -12.11371 -11.94905 -11.85945 -11.57840 -11.40883 -11.21671 -11.17071 -10.95610 -10.62242 -10.11442 -10.06893 -10.03495 -9.96567 -9.67880 -8.95456 -8.74440 -8.45656 -8.28260 -6.39078 -3.91538 2.65092 3.01733 3.06406 3.14218 3.17881 3.34551 3.35134 3.60100 4.03542 4.06137 4.27913 4.33678 4.50124 4.61191 4.62937 4.72693 4.85153 4.91092 4.93532 4.97145 4.98188 5.03552 5.12431 5.16157 5.22549 5.28937 5.30314 5.33598 5.49423 5.53547 5.66312 5.71756 5.80902 5.84401 5.89455 5.95600 6.22111 6.68595 6.68657 6.84053 7.16232 7.46934 8.02254 8.15222 8.46457 8.76404 8.83565 9.31871 9.65785 10.73083 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.024684 B = 0.001797 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.072674 B =15573.616808 C =16331.603229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.061 3.939 4 C 0.064 3.936 5 O -0.377 6.377 6 C 0.075 3.925 7 C -0.101 4.101 8 H 0.096 0.904 9 C -0.121 4.121 10 C 0.098 3.902 11 N -0.639 5.639 12 C 0.724 3.276 13 O -0.595 6.595 14 N -0.723 5.723 15 C 0.126 3.874 16 C 0.439 3.561 17 O -0.579 6.579 18 N -0.577 5.577 19 C -0.310 4.310 20 H 0.121 0.879 21 C 0.045 3.955 22 N -0.875 5.875 23 Si 0.879 3.121 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.267 1.267 27 C 0.137 3.863 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.408 0.592 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.375 0.625 45 H 0.275 0.725 46 H 0.062 0.938 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.340 5.839 28.328 32.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.015 4.015 4 C -0.013 4.013 5 O -0.297 6.297 6 C -0.002 4.002 7 C -0.120 4.120 8 H 0.114 0.886 9 C -0.159 4.159 10 C -0.025 4.025 11 N -0.379 5.379 12 C 0.425 3.575 13 O -0.474 6.474 14 N -0.381 5.381 15 C -0.003 4.003 16 C 0.225 3.775 17 O -0.464 6.464 18 N -0.214 5.214 19 C -0.438 4.438 20 H 0.139 0.861 21 C -0.159 4.159 22 N -0.514 5.514 23 Si 0.705 3.295 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.192 1.192 27 C 0.014 3.986 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.246 0.754 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.208 0.792 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.344 5.643 27.927 31.898 hybrid contribution -0.549 0.781 -0.594 1.124 sum -14.893 6.424 27.333 31.783 Atomic orbital electron populations 1.22755 0.80972 1.02947 0.99910 1.87959 1.19676 1.27265 1.95382 1.22571 0.92396 0.85589 1.00965 1.22501 0.93409 0.97552 0.87792 1.87985 1.21868 1.82020 1.37795 1.22406 0.81777 0.99368 0.96642 1.22388 0.96571 0.99791 0.93291 0.88571 1.22599 0.94882 1.03199 0.95202 1.22002 0.91209 0.96402 0.92915 1.47468 1.29773 1.56341 1.04278 1.15321 0.82545 0.80218 0.79380 1.90904 1.34262 1.44956 1.77305 1.44760 1.30448 1.57059 1.05820 1.20812 0.98708 1.00929 0.79850 1.19655 0.88328 0.86443 0.83029 1.90527 1.42590 1.45799 1.67449 1.42113 1.26190 1.47504 1.05635 1.19438 1.04592 1.29685 0.90106 0.86097 1.25059 0.97187 0.97387 0.96252 1.69622 1.30755 1.42267 1.08756 0.86673 0.81448 0.80828 0.80564 1.19405 1.20001 1.19184 1.22044 0.95018 0.96187 0.85354 0.93885 0.89526 0.94227 0.91882 0.92202 0.92449 0.91726 0.92629 0.92885 0.89525 0.90259 0.91119 0.91115 0.75437 0.89867 0.89867 0.79216 0.91414 0.91939 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.54 10.67 -40.09 -0.43 -3.97 16 3 C 0.06 0.42 6.32 37.16 0.23 0.65 16 4 C 0.06 0.43 6.32 37.16 0.23 0.66 16 5 O -0.38 -3.55 10.28 -40.09 -0.41 -3.96 16 6 C 0.08 0.54 5.40 37.15 0.20 0.74 16 7 C -0.10 -0.85 3.31 -88.36 -0.29 -1.15 16 8 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 9 C -0.12 -0.85 6.41 -24.90 -0.16 -1.01 16 10 C 0.10 0.99 6.15 -3.07 -0.02 0.97 16 11 N -0.64 -8.60 3.33 -176.10 -0.59 -9.18 16 12 C 0.72 12.48 8.49 -86.93 -0.74 11.74 16 13 O -0.60 -12.12 16.60 5.29 0.09 -12.03 16 14 N -0.72 -12.53 5.49 -66.42 -0.36 -12.90 16 15 C 0.13 2.29 6.15 -5.19 -0.03 2.26 16 16 C 0.44 9.87 7.85 -10.98 -0.09 9.79 16 17 O -0.58 -14.81 15.24 5.55 0.08 -14.73 16 18 N -0.58 -13.61 5.09 -10.97 -0.06 -13.67 16 19 C -0.31 -8.61 10.16 -14.93 -0.15 -8.76 16 20 H 0.12 3.81 7.39 -52.49 -0.39 3.43 16 21 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 22 N -0.87 -25.11 13.96 55.50 0.77 -24.34 16 23 Si 0.88 19.21 27.74 -169.99 -4.71 14.49 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 27 C 0.14 1.57 6.36 -2.41 -0.02 1.55 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.05 0.32 7.97 -51.93 -0.41 -0.09 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.46 8.04 -51.93 -0.42 0.04 16 39 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.41 6.93 6.42 -40.82 -0.26 6.67 16 42 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 44 H 0.37 7.83 5.76 -40.82 -0.24 7.60 16 45 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.06 0.67 7.91 -51.93 -0.41 0.26 16 47 H 0.08 1.09 8.03 -51.93 -0.42 0.67 16 LS Contribution 392.36 15.07 5.91 5.91 Total: -1.00 -35.50 392.36 -7.14 -42.64 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -7.63 Total: 11.85 kcal Atomic # 6 Polarization: 19.69 SS G_CDS: 0.19 Total: 19.88 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -0.23 Total: -60.08 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.67 Total: -34.69 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.50 -7.14 -42.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329235300.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.673 kcal (2) G-P(sol) polarization free energy of solvation -35.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds