Wall clock time and date at job start Tue Mar 31 2020 05:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 120.00398 * 2 1 4 4 C 1.53002 * 109.46977 * 269.99925 * 3 2 1 5 5 H 1.09004 * 109.47182 * 305.00205 * 4 3 2 6 6 O 1.42906 * 109.47069 * 64.99721 * 4 3 2 7 7 C 1.52991 * 109.47129 * 184.99671 * 4 3 2 8 8 N 1.46901 * 109.47355 * 179.97438 * 7 4 3 9 9 C 1.47007 * 111.00187 * 293.64029 * 8 7 4 10 10 C 1.53099 * 109.25856 * 177.60529 * 9 8 7 11 11 O 1.43014 * 109.26022 * 56.84646 * 10 9 8 12 12 C 1.43014 * 113.73914 * 301.33410 * 11 10 9 13 13 C 1.47015 * 111.00047 * 169.99873 * 8 7 4 14 14 C 1.34781 * 119.99531 * 179.97438 * 2 1 3 15 15 O 1.21278 * 119.99531 * 180.02562 * 14 2 1 16 16 C 1.50693 * 120.00261 * 0.02562 * 14 2 1 17 17 H 1.09005 * 109.47168 * 319.99959 * 16 14 2 18 18 N 1.46901 * 109.47231 * 199.99856 * 16 14 2 19 19 C 1.53006 * 109.47471 * 79.99562 * 16 14 2 20 20 C 1.52999 * 109.46997 * 185.00271 * 19 16 14 21 21 C 1.50706 * 109.46573 * 180.02562 * 20 19 16 22 22 H 1.07995 * 120.00167 * 359.72054 * 21 20 19 23 23 C 1.37879 * 119.99394 * 179.97438 * 21 20 19 24 24 N 1.31514 * 120.00338 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99424 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47487 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47233 * 120.00158 * 25 23 21 28 28 H 1.48508 * 109.46883 * 239.99963 * 25 23 21 29 29 H 1.09001 * 109.47244 * 270.00441 * 1 2 3 30 30 H 1.08998 * 109.46704 * 30.00176 * 1 2 3 31 31 H 1.08992 * 109.47420 * 150.00111 * 1 2 3 32 32 H 1.09001 * 109.46987 * 29.99346 * 3 2 1 33 33 H 1.08992 * 109.47249 * 150.00032 * 3 2 1 34 34 H 0.96705 * 113.99900 * 60.00100 * 6 4 3 35 35 H 1.09004 * 109.47525 * 300.00324 * 7 4 3 36 36 H 1.09000 * 109.47285 * 60.00184 * 7 4 3 37 37 H 1.09002 * 109.50936 * 297.53693 * 9 8 7 38 38 H 1.08998 * 109.51077 * 57.66765 * 9 8 7 39 39 H 1.08996 * 109.50586 * 296.91100 * 10 9 8 40 40 H 1.09008 * 109.54329 * 176.80477 * 10 9 8 41 41 H 1.09004 * 109.50178 * 298.73235 * 12 11 10 42 42 H 1.08995 * 109.54164 * 178.62750 * 12 11 10 43 43 H 1.08997 * 109.51169 * 302.33025 * 13 8 7 44 44 H 1.09001 * 109.50492 * 62.46821 * 13 8 7 45 45 H 1.00892 * 110.99802 * 299.99727 * 18 16 14 46 46 H 1.00896 * 111.00006 * 63.95285 * 18 16 14 47 47 H 1.09000 * 109.46866 * 65.00059 * 19 16 14 48 48 H 1.09001 * 109.46611 * 305.00176 * 19 16 14 49 49 H 1.09000 * 109.47486 * 60.00167 * 20 19 16 50 50 H 1.09001 * 109.47362 * 299.99445 * 20 19 16 51 51 H 0.96996 * 119.99730 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4527 1.7103 -1.4425 5 1 2.9643 0.9129 -1.9816 6 8 1.2061 1.9935 -2.0815 7 6 3.3239 2.9679 -1.4444 8 7 3.5693 3.3916 -2.8294 9 6 4.3904 2.4041 -3.5448 10 6 4.5712 2.8547 -4.9968 11 8 5.1547 4.1602 -5.0165 12 6 4.3808 5.1471 -4.3292 13 6 4.1981 4.7199 -2.8705 14 6 2.1389 -1.1673 0.0005 15 8 3.3516 -1.1673 0.0010 16 6 1.3853 -2.4723 0.0005 17 1 0.5216 -2.3932 0.6608 18 7 2.2674 -3.5471 0.4748 19 6 0.9138 -2.7891 -1.4202 20 6 0.0438 -4.0475 -1.4001 21 6 -0.4201 -4.3598 -2.7995 22 1 -0.1277 -3.7217 -3.6203 23 6 -1.2221 -5.4571 -3.0311 24 7 -1.5826 -6.2310 -2.0307 25 14 -1.7965 -5.8446 -4.7658 26 1 -1.2575 -4.8280 -5.7045 27 1 -1.3086 -7.1907 -5.1597 28 1 -3.2807 -5.8228 -4.8123 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8899 -0.5138 32 1 1.6085 2.0284 0.5137 33 1 3.1500 1.1383 0.5138 34 1 0.6956 2.6949 -1.6543 35 1 2.8123 3.7653 -0.9053 36 1 4.2747 2.7520 -0.9571 37 1 5.3656 2.3250 -3.0643 38 1 3.8939 1.4341 -3.5239 39 1 3.6010 2.8821 -5.4928 40 1 5.2261 2.1554 -5.5168 41 1 3.4050 5.2413 -4.8059 42 1 4.8977 6.1061 -4.3656 43 1 3.5611 5.4402 -2.3573 44 1 5.1702 4.6777 -2.3792 45 1 3.0761 -3.6405 -0.1212 46 1 2.5407 -3.3938 1.4338 47 1 1.7792 -2.9558 -2.0615 48 1 0.3323 -1.9514 -1.8051 49 1 -0.8216 -3.8807 -0.7587 50 1 0.6253 -4.8852 -1.0151 51 1 -2.1471 -7.0027 -2.1937 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336711196.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:30 Heat of formation + Delta-G solvation = -126.182643 kcal Electronic energy + Delta-G solvation = -29602.110882 eV Core-core repulsion = 25536.477163 eV Total energy + Delta-G solvation = -4065.633719 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.31481 -39.79727 -37.92145 -35.73499 -35.28458 -34.96225 -32.79386 -31.57170 -31.00136 -30.09678 -28.36015 -26.74507 -26.20168 -24.79954 -24.37576 -22.99959 -21.77917 -20.70644 -20.33311 -19.06288 -17.37642 -17.12348 -16.55498 -16.42314 -16.25830 -16.10570 -15.72039 -15.62306 -15.39115 -15.31481 -14.77107 -14.65459 -14.33542 -14.16383 -13.72140 -13.51391 -13.23675 -12.94228 -12.81515 -12.46695 -12.34300 -12.17856 -11.96333 -11.89810 -11.78677 -11.68964 -11.50759 -11.10765 -10.89019 -10.88467 -10.65082 -10.52285 -10.49783 -10.08713 -9.94291 -9.76747 -9.35562 -8.97322 -8.73595 -8.58158 -8.34532 -8.19400 -5.92606 -3.94457 2.69026 2.97595 3.35314 3.36277 3.42954 3.47462 3.57106 4.23854 4.33595 4.51262 4.54599 4.61566 4.66018 4.77391 4.82787 4.84611 4.91153 4.97090 5.02195 5.10349 5.19818 5.21038 5.24285 5.31784 5.41210 5.43067 5.43337 5.50215 5.55371 5.58566 5.66084 5.78666 5.84213 5.86482 6.37530 6.49740 6.56394 6.58171 6.68087 6.82173 7.09433 7.29688 7.49622 7.54255 7.77428 7.79697 7.96940 8.14103 8.24245 8.50056 9.13773 9.68854 11.18343 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.011866 B = 0.002809 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.104509 B = 9966.748786 C =11350.651805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.607 5.607 3 C 0.084 3.916 4 C 0.097 3.903 5 H 0.102 0.898 6 O -0.537 6.537 7 C 0.026 3.974 8 N -0.524 5.524 9 C 0.015 3.985 10 C 0.064 3.936 11 O -0.388 6.388 12 C 0.064 3.936 13 C 0.017 3.983 14 C 0.484 3.516 15 O -0.557 6.557 16 C 0.079 3.921 17 H 0.098 0.902 18 N -0.807 5.807 19 C -0.096 4.096 20 C 0.032 3.968 21 C -0.520 4.520 22 H 0.053 0.947 23 C 0.058 3.942 24 N -0.893 5.893 25 Si 0.888 3.112 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.285 1.285 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.366 0.634 35 H 0.079 0.921 36 H 0.045 0.955 37 H 0.042 0.958 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.099 0.901 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.041 0.959 45 H 0.347 0.653 46 H 0.333 0.667 47 H 0.052 0.948 48 H 0.057 0.943 49 H 0.012 0.988 50 H 0.034 0.966 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.965 24.250 3.804 26.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.340 5.340 3 C -0.041 4.041 4 C 0.036 3.964 5 H 0.120 0.880 6 O -0.341 6.341 7 C -0.103 4.103 8 N -0.249 5.249 9 C -0.113 4.113 10 C -0.012 4.012 11 O -0.306 6.306 12 C -0.013 4.013 13 C -0.111 4.111 14 C 0.272 3.728 15 O -0.435 6.435 16 C -0.037 4.037 17 H 0.115 0.885 18 N -0.335 5.335 19 C -0.134 4.134 20 C -0.005 4.005 21 C -0.559 4.559 22 H 0.071 0.929 23 C -0.143 4.143 24 N -0.532 5.532 25 Si 0.716 3.284 26 H -0.198 1.198 27 H -0.211 1.211 28 H -0.211 1.211 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.212 0.788 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.110 0.890 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.059 0.941 45 H 0.161 0.839 46 H 0.144 0.856 47 H 0.070 0.930 48 H 0.076 0.924 49 H 0.031 0.969 50 H 0.053 0.947 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.801 23.175 2.975 24.968 hybrid contribution 0.669 0.939 0.277 1.186 sum 9.470 24.114 3.252 26.110 Atomic orbital electron populations 1.22023 0.78617 1.04943 1.01532 1.47827 1.07429 1.05161 1.73596 1.22059 0.98650 0.86470 0.96912 1.22350 0.85182 0.95637 0.93226 0.88039 1.86720 1.31578 1.59148 1.56657 1.22795 0.99689 0.98442 0.89397 1.62118 1.46590 1.01981 1.14232 1.22850 0.96050 0.96918 0.95455 1.22678 0.99286 0.84190 0.95093 1.87980 1.48577 1.18407 1.75643 1.22638 0.96485 0.91660 0.90513 1.22804 0.98198 0.91704 0.98405 1.22817 0.88761 0.87091 0.74153 1.90622 1.14415 1.87697 1.50810 1.21857 0.95715 0.84530 1.01601 0.88455 1.59005 1.23991 1.43798 1.06676 1.21702 1.00228 1.01518 0.89975 1.19015 0.93660 0.91387 0.96455 1.21318 1.30306 1.10302 0.93951 0.92903 1.24988 0.96366 0.96315 0.96665 1.69984 1.36593 1.16199 1.30474 0.86603 0.78366 0.78215 0.85210 1.19805 1.21085 1.21107 0.92924 0.90668 0.89188 0.90416 0.89467 0.78766 0.90229 0.93702 0.94012 0.89045 0.91894 0.88274 0.92137 0.88575 0.89714 0.94119 0.83896 0.85552 0.92952 0.92429 0.96922 0.94714 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 9.67 59.85 0.58 1.36 16 2 N -0.61 -7.62 2.84 -181.58 -0.52 -8.14 16 3 C 0.08 0.84 5.07 -4.04 -0.02 0.82 16 4 C 0.10 1.00 3.09 -26.73 -0.08 0.92 16 5 H 0.10 1.39 6.52 -51.93 -0.34 1.05 16 6 O -0.54 -5.75 12.03 -35.23 -0.42 -6.17 16 7 C 0.03 0.22 4.62 -3.83 -0.02 0.20 16 8 N -0.52 -4.95 4.59 -234.32 -1.08 -6.03 16 9 C 0.02 0.16 5.44 -3.71 -0.02 0.14 16 10 C 0.06 0.63 7.01 37.21 0.26 0.89 16 11 O -0.39 -4.12 10.83 -35.23 -0.38 -4.51 16 12 C 0.06 0.52 7.01 37.21 0.26 0.78 16 13 C 0.02 0.13 5.65 -3.71 -0.02 0.11 16 14 C 0.48 7.65 6.92 -10.99 -0.08 7.58 16 15 O -0.56 -10.05 15.83 5.56 0.09 -9.96 16 16 C 0.08 1.33 2.31 -68.86 -0.16 1.17 16 17 H 0.10 1.57 7.21 -51.93 -0.37 1.20 16 18 N -0.81 -13.75 8.44 -5.65 -0.05 -13.80 16 19 C -0.10 -1.96 4.45 -26.73 -0.12 -2.07 16 20 C 0.03 0.81 4.86 -27.88 -0.14 0.68 16 21 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 22 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 23 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 24 N -0.89 -26.94 13.29 55.43 0.74 -26.21 16 25 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 26 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.68 7.11 -51.93 -0.37 0.31 16 31 H 0.09 1.18 4.83 -51.93 -0.25 0.93 16 32 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 33 H 0.09 0.97 7.42 -51.93 -0.39 0.58 16 34 H 0.37 2.50 9.04 45.56 0.41 2.91 16 35 H 0.08 0.51 8.04 -51.93 -0.42 0.09 16 36 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 37 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 1.04 6.38 -51.93 -0.33 0.71 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 44 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.35 6.01 8.58 -39.30 -0.34 5.67 16 46 H 0.33 4.92 9.06 -39.29 -0.36 4.56 16 47 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.06 1.13 6.43 -51.93 -0.33 0.79 16 49 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 51 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 401.32 15.07 6.05 6.05 Total: -1.00 -34.37 401.32 -8.65 -43.02 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -8.09 Total: 9.85 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 0.04 Total: -0.93 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.90 Total: -54.17 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.72 Total: -20.64 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.37 -8.65 -43.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336711196.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.163 kcal (2) G-P(sol) polarization free energy of solvation -34.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds