Wall clock time and date at job start Tue Mar 31 2020 05:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.52996 * 109.47198 * 270.00278 * 3 2 1 5 5 H 1.08996 * 109.47300 * 304.99890 * 4 3 2 6 6 O 1.42905 * 109.47377 * 64.99959 * 4 3 2 7 7 C 1.53004 * 109.46903 * 184.99592 * 4 3 2 8 8 N 1.46903 * 109.46666 * 179.97438 * 7 4 3 9 9 C 1.47007 * 111.00362 * 293.63658 * 8 7 4 10 10 C 1.53101 * 109.26038 * 177.61342 * 9 8 7 11 11 O 1.43009 * 109.25857 * 56.84419 * 10 9 8 12 12 C 1.43017 * 113.74222 * 301.33557 * 11 10 9 13 13 C 1.47026 * 110.99562 * 170.00136 * 8 7 4 14 14 C 1.34784 * 119.99971 * 180.02562 * 2 1 3 15 15 O 1.21283 * 119.99649 * 179.97438 * 14 2 1 16 16 C 1.50697 * 119.99774 * 359.72768 * 14 2 1 17 17 H 1.08998 * 109.47795 * 39.99930 * 16 14 2 18 18 N 1.46899 * 109.46885 * 160.00203 * 16 14 2 19 19 C 1.53001 * 109.46917 * 279.99599 * 16 14 2 20 20 C 1.52998 * 109.47003 * 175.00627 * 19 16 14 21 21 C 1.50703 * 109.47038 * 180.02562 * 20 19 16 22 22 H 1.08000 * 120.00291 * 359.97438 * 21 20 19 23 23 C 1.37875 * 120.00040 * 179.97438 * 21 20 19 24 24 N 1.31522 * 120.00183 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00158 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47053 * 60.00292 * 25 23 21 27 27 H 1.48500 * 109.47216 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47026 * 300.00094 * 25 23 21 29 29 H 1.08999 * 109.47256 * 269.99572 * 1 2 3 30 30 H 1.08998 * 109.47416 * 29.99674 * 1 2 3 31 31 H 1.09008 * 109.47058 * 150.00274 * 1 2 3 32 32 H 1.08997 * 109.46865 * 30.00228 * 3 2 1 33 33 H 1.08998 * 109.47058 * 149.99741 * 3 2 1 34 34 H 0.96698 * 113.99631 * 59.99210 * 6 4 3 35 35 H 1.08996 * 109.47386 * 300.00245 * 7 4 3 36 36 H 1.09000 * 109.47121 * 60.00238 * 7 4 3 37 37 H 1.09006 * 109.50781 * 297.54613 * 9 8 7 38 38 H 1.08999 * 109.50466 * 57.67404 * 9 8 7 39 39 H 1.08999 * 109.49806 * 296.91281 * 10 9 8 40 40 H 1.08992 * 109.54433 * 176.80893 * 10 9 8 41 41 H 1.09003 * 109.50296 * 298.73369 * 12 11 10 42 42 H 1.08994 * 109.54184 * 178.62784 * 12 11 10 43 43 H 1.08995 * 109.50554 * 302.33294 * 13 8 7 44 44 H 1.08998 * 109.50144 * 62.46037 * 13 8 7 45 45 H 1.00896 * 111.00735 * 59.99680 * 18 16 14 46 46 H 1.00898 * 111.00225 * 183.95319 * 18 16 14 47 47 H 1.09004 * 109.47248 * 295.00243 * 19 16 14 48 48 H 1.09003 * 109.47165 * 55.00053 * 19 16 14 49 49 H 1.08999 * 109.46903 * 299.99449 * 20 19 16 50 50 H 1.08990 * 109.47625 * 60.00034 * 20 19 16 51 51 H 0.96996 * 120.00040 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 2.9641 0.9132 -1.9815 6 8 1.2060 1.9936 -2.0814 7 6 3.3237 2.9681 -1.4442 8 7 3.5690 3.3919 -2.8293 9 6 4.3902 2.4045 -3.5447 10 6 4.5710 2.8552 -4.9967 11 8 5.1544 4.1607 -5.0163 12 6 4.3804 5.1476 -4.3289 13 6 4.1978 4.7203 -2.8703 14 6 2.1389 -1.1673 -0.0005 15 8 3.3517 -1.1672 -0.0010 16 6 1.3854 -2.4723 0.0051 17 1 0.5192 -2.3947 -0.6520 18 7 2.2657 -3.5480 -0.4701 19 6 0.9194 -2.7860 1.4283 20 6 0.0495 -4.0445 1.4143 21 6 -0.4100 -4.3531 2.8160 22 1 -0.1111 -3.7157 3.6349 23 6 -1.2120 -5.4493 3.0529 24 7 -1.5756 -6.2260 2.0557 25 14 -1.7810 -5.8323 4.7905 26 1 -2.5708 -4.6897 5.3158 27 1 -2.6254 -7.0538 4.7769 28 1 -0.5986 -6.0582 5.6601 29 1 -0.3634 -0.0001 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8901 -0.5138 32 1 1.6084 2.0283 0.5139 33 1 3.1499 1.1383 0.5139 34 1 0.6955 2.6949 -1.6541 35 1 2.8120 3.7654 -0.9051 36 1 4.2745 2.7522 -0.9569 37 1 5.3654 2.3254 -3.0641 38 1 3.8936 1.4345 -3.5238 39 1 3.6007 2.8826 -5.4926 40 1 5.2258 2.1560 -5.5166 41 1 3.4046 5.2417 -4.8056 42 1 4.8972 6.1065 -4.3653 43 1 3.5607 5.4404 -2.3569 44 1 5.1698 4.6780 -2.3789 45 1 3.0767 -3.6402 0.1229 46 1 1.7655 -4.4217 -0.5369 47 1 1.7873 -2.9513 2.0667 48 1 0.3393 -1.9475 1.8138 49 1 -0.8184 -3.8792 0.7760 50 1 0.6295 -4.8829 1.0289 51 1 -2.1395 -6.9974 2.2225 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336711197.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:35 Heat of formation + Delta-G solvation = -127.462544 kcal Electronic energy + Delta-G solvation = -29239.946021 eV Core-core repulsion = 25174.256801 eV Total energy + Delta-G solvation = -4065.689220 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.24867 -39.75129 -37.90217 -35.74153 -35.47639 -34.91830 -32.86836 -31.59684 -31.00693 -29.89378 -28.39743 -26.77936 -26.19534 -24.83426 -24.40312 -23.20585 -21.80964 -20.72280 -20.45978 -18.94916 -17.51924 -17.15868 -16.59415 -16.34322 -16.26095 -16.14729 -15.82342 -15.54503 -15.42245 -14.93500 -14.55199 -14.50740 -14.26831 -14.19341 -13.90650 -13.64157 -13.17857 -12.93085 -12.81031 -12.57101 -12.40622 -12.32550 -12.14143 -11.96712 -11.76425 -11.72061 -11.57487 -11.11943 -11.05473 -10.92312 -10.89292 -10.72459 -10.52079 -10.01253 -9.97960 -9.87128 -9.29248 -9.19591 -8.74492 -8.52686 -8.44593 -8.17700 -6.09456 -4.12757 2.85122 2.99055 3.27120 3.32255 3.34377 3.35939 3.54325 4.23927 4.34161 4.37986 4.53028 4.59777 4.68342 4.77101 4.81812 4.84670 4.95514 4.97533 5.10220 5.16240 5.18530 5.20766 5.24171 5.26523 5.29166 5.40554 5.47988 5.51913 5.52671 5.62455 5.68655 5.76574 5.80975 5.92171 6.29098 6.44860 6.51701 6.55312 6.59462 6.78875 6.86324 7.33686 7.49776 7.51365 7.58303 7.63809 7.87282 7.90868 8.29879 8.40245 8.92871 9.52028 11.01332 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.030660 B = 0.002060 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.027294 B =13589.248018 C =13933.489351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.087 3.913 4 C 0.098 3.902 5 H 0.102 0.898 6 O -0.541 6.541 7 C 0.025 3.975 8 N -0.524 5.524 9 C 0.015 3.985 10 C 0.065 3.935 11 O -0.388 6.388 12 C 0.064 3.936 13 C 0.017 3.983 14 C 0.527 3.473 15 O -0.542 6.542 16 C 0.074 3.926 17 H 0.098 0.902 18 N -0.831 5.831 19 C -0.137 4.137 20 C 0.026 3.974 21 C -0.524 4.524 22 H 0.053 0.947 23 C 0.059 3.941 24 N -0.893 5.893 25 Si 0.893 3.107 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.367 0.633 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.041 0.959 45 H 0.344 0.656 46 H 0.354 0.646 47 H 0.053 0.947 48 H 0.057 0.943 49 H 0.018 0.982 50 H 0.017 0.983 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.929 22.998 -10.200 26.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.345 5.345 3 C -0.038 4.038 4 C 0.037 3.963 5 H 0.120 0.880 6 O -0.345 6.345 7 C -0.104 4.104 8 N -0.249 5.249 9 C -0.113 4.113 10 C -0.012 4.012 11 O -0.306 6.306 12 C -0.013 4.013 13 C -0.112 4.112 14 C 0.316 3.684 15 O -0.418 6.418 16 C -0.040 4.040 17 H 0.116 0.884 18 N -0.363 5.363 19 C -0.177 4.177 20 C -0.012 4.012 21 C -0.562 4.562 22 H 0.072 0.928 23 C -0.143 4.143 24 N -0.531 5.531 25 Si 0.721 3.279 26 H -0.202 1.202 27 H -0.212 1.212 28 H -0.203 1.203 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.213 0.787 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.117 0.883 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.059 0.941 45 H 0.158 0.842 46 H 0.169 0.831 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.037 0.963 50 H 0.036 0.964 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.466 22.850 -11.646 27.008 hybrid contribution -0.320 -0.369 3.013 3.052 sum 8.146 22.481 -8.634 25.422 Atomic orbital electron populations 1.21911 0.78789 1.03713 1.01969 1.47654 1.07272 1.05079 1.74484 1.22024 0.98804 0.86209 0.96732 1.22365 0.85001 0.95607 0.93367 0.87974 1.86671 1.31746 1.59254 1.56806 1.22805 0.99817 0.98472 0.89322 1.62135 1.46514 1.01957 1.14319 1.22851 0.96158 0.96895 0.95405 1.22668 0.99157 0.84240 0.95139 1.87981 1.48599 1.18397 1.75645 1.22638 0.96427 0.91656 0.90541 1.22807 0.98286 0.91731 0.98347 1.20943 0.87906 0.85368 0.74223 1.90613 1.14194 1.87370 1.49616 1.21524 0.95092 0.89117 0.98313 0.88401 1.58757 1.10838 1.09293 1.57445 1.22376 1.00608 1.01711 0.92987 1.19086 0.93991 0.90622 0.97460 1.21131 1.30875 1.10751 0.93475 0.92825 1.25015 0.96110 0.96152 0.97037 1.69939 1.36246 1.16074 1.30880 0.86644 0.78729 0.77727 0.84821 1.20227 1.21210 1.20258 0.92353 0.90914 0.90368 0.90334 0.89274 0.78678 0.90172 0.93546 0.93941 0.89078 0.92019 0.88339 0.92178 0.88567 0.89683 0.94054 0.84240 0.83073 0.92826 0.92453 0.96339 0.96441 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 9.39 59.85 0.56 1.44 16 2 N -0.61 -7.98 2.84 -181.57 -0.52 -8.49 16 3 C 0.09 0.90 5.06 -4.04 -0.02 0.88 16 4 C 0.10 0.96 3.09 -26.73 -0.08 0.88 16 5 H 0.10 1.33 6.51 -51.93 -0.34 0.99 16 6 O -0.54 -5.30 12.03 -35.23 -0.42 -5.73 16 7 C 0.02 0.20 4.62 -3.82 -0.02 0.18 16 8 N -0.52 -4.63 4.59 -234.30 -1.08 -5.71 16 9 C 0.01 0.14 5.44 -3.71 -0.02 0.12 16 10 C 0.06 0.58 7.01 37.21 0.26 0.84 16 11 O -0.39 -3.86 10.83 -35.23 -0.38 -4.24 16 12 C 0.06 0.48 7.01 37.20 0.26 0.74 16 13 C 0.02 0.12 5.65 -3.71 -0.02 0.10 16 14 C 0.53 8.80 6.92 -10.98 -0.08 8.73 16 15 O -0.54 -10.42 15.83 5.56 0.09 -10.34 16 16 C 0.07 1.29 2.48 -68.87 -0.17 1.12 16 17 H 0.10 1.63 6.30 -51.93 -0.33 1.30 16 18 N -0.83 -14.60 8.94 -5.66 -0.05 -14.65 16 19 C -0.14 -2.69 4.71 -26.73 -0.13 -2.82 16 20 C 0.03 0.62 4.74 -27.88 -0.13 0.48 16 21 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16 22 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 23 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 24 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 25 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 29 H 0.06 0.64 7.65 -51.93 -0.40 0.25 16 30 H 0.07 0.63 7.11 -51.93 -0.37 0.26 16 31 H 0.08 0.94 5.95 -51.92 -0.31 0.63 16 32 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 33 H 0.09 1.04 7.42 -51.93 -0.39 0.66 16 34 H 0.37 2.27 9.04 45.56 0.41 2.68 16 35 H 0.08 0.50 8.04 -51.93 -0.42 0.08 16 36 H 0.05 0.40 8.12 -51.93 -0.42 -0.02 16 37 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 0.95 6.38 -51.93 -0.33 0.62 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.49 8.09 -51.93 -0.42 0.07 16 44 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.34 6.11 8.58 -39.29 -0.34 5.77 16 46 H 0.35 6.21 7.55 -39.29 -0.30 5.91 16 47 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 48 H 0.06 1.08 6.95 -51.93 -0.36 0.72 16 49 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 51 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 399.70 15.07 6.02 6.02 Total: -1.00 -33.02 399.70 -8.61 -41.63 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -8.00 Total: 10.86 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 0.01 Total: -0.36 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.91 Total: -53.98 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.72 Total: -20.30 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.02 -8.61 -41.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336711197.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.828 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds