Wall clock time and date at job start Tue Mar 31 2020 05:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00123 * 2 1 4 4 C 1.53007 * 109.47284 * 90.00134 * 3 2 1 5 5 H 1.08998 * 109.46674 * 59.99635 * 4 3 2 6 6 O 1.42898 * 109.46891 * 300.00068 * 4 3 2 7 7 C 1.52997 * 109.47128 * 180.02562 * 4 3 2 8 8 N 1.46908 * 109.46719 * 184.99648 * 7 4 3 9 9 C 1.47024 * 110.99261 * 66.32173 * 8 7 4 10 10 C 1.53103 * 109.24985 * 182.34870 * 9 8 7 11 11 O 1.43012 * 109.29295 * 303.21723 * 10 9 8 12 12 C 1.43011 * 113.74271 * 58.65008 * 11 10 9 13 13 C 1.47018 * 110.99661 * 189.99712 * 8 7 4 14 14 C 1.34781 * 119.99943 * 179.97438 * 2 1 3 15 15 O 1.21278 * 119.99991 * 180.02562 * 14 2 1 16 16 C 1.50700 * 119.99630 * 0.02562 * 14 2 1 17 17 H 1.08997 * 109.47169 * 319.99156 * 16 14 2 18 18 N 1.46910 * 109.46804 * 199.99646 * 16 14 2 19 19 C 1.53003 * 109.47332 * 79.99800 * 16 14 2 20 20 C 1.52994 * 109.46914 * 184.99735 * 19 16 14 21 21 C 1.50696 * 109.47120 * 179.97438 * 20 19 16 22 22 H 1.08000 * 120.00072 * 359.97438 * 21 20 19 23 23 C 1.37879 * 120.00029 * 180.02562 * 21 20 19 24 24 N 1.31515 * 120.00429 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99745 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47212 * 90.00309 * 25 23 21 27 27 H 1.48502 * 109.46723 * 209.99880 * 25 23 21 28 28 H 1.48490 * 109.47174 * 329.99690 * 25 23 21 29 29 H 1.08998 * 109.47163 * 89.99797 * 1 2 3 30 30 H 1.08998 * 109.47140 * 210.00109 * 1 2 3 31 31 H 1.09003 * 109.46753 * 329.99921 * 1 2 3 32 32 H 1.08998 * 109.47133 * 329.99994 * 3 2 1 33 33 H 1.09006 * 109.47406 * 209.99635 * 3 2 1 34 34 H 0.96701 * 113.99894 * 300.00253 * 6 4 3 35 35 H 1.09001 * 109.47059 * 65.00273 * 7 4 3 36 36 H 1.08995 * 109.46804 * 304.99511 * 7 4 3 37 37 H 1.08998 * 109.47369 * 62.43595 * 9 8 7 38 38 H 1.08998 * 109.54483 * 302.29802 * 9 8 7 39 39 H 1.09002 * 109.50635 * 183.25881 * 10 9 8 40 40 H 1.09003 * 109.50698 * 63.17493 * 10 9 8 41 41 H 1.08997 * 109.50806 * 61.26171 * 12 11 10 42 42 H 1.08997 * 109.50924 * 181.35636 * 12 11 10 43 43 H 1.08994 * 109.50209 * 57.67478 * 13 8 7 44 44 H 1.08997 * 109.50514 * 297.54292 * 13 8 7 45 45 H 1.00895 * 111.00001 * 176.04327 * 18 16 14 46 46 H 1.00903 * 110.99484 * 299.99924 * 18 16 14 47 47 H 1.08997 * 109.46942 * 304.99785 * 19 16 14 48 48 H 1.08998 * 109.46769 * 64.99709 * 19 16 14 49 49 H 1.09007 * 109.47238 * 299.99791 * 20 19 16 50 50 H 1.09002 * 109.47756 * 59.99713 * 20 19 16 51 51 H 0.96991 * 120.00188 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 1.4426 5 1 3.0416 0.9507 1.9563 6 8 1.2040 1.8813 2.1162 7 6 3.2170 3.0357 1.4425 8 7 3.5664 3.3994 2.8223 9 6 4.5306 2.4459 3.3903 10 6 4.8214 2.8277 4.8442 11 8 5.2983 4.1751 4.8926 12 6 4.3832 5.1298 4.3483 13 6 4.0888 4.7721 2.8891 14 6 2.1389 -1.1672 0.0005 15 8 3.3517 -1.1673 0.0010 16 6 1.3853 -2.4723 0.0005 17 1 0.5217 -2.3932 0.6608 18 7 2.2674 -3.5471 0.4748 19 6 0.9138 -2.7890 -1.4202 20 6 0.0439 -4.0474 -1.4001 21 6 -0.4210 -4.3591 -2.7993 22 1 -0.1259 -3.7229 -3.6206 23 6 -1.2240 -5.4558 -3.0307 24 7 -1.5838 -6.2302 -2.0305 25 14 -1.7997 -5.8424 -4.7653 26 1 -0.8145 -6.7355 -5.4263 27 1 -3.1208 -6.5183 -4.7091 28 1 -1.9215 -4.5810 -5.5391 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6085 2.0283 -0.5138 33 1 3.1500 1.1384 -0.5138 34 1 0.6268 2.5439 1.7126 35 1 2.5917 3.8158 1.0084 36 1 4.1277 2.9298 0.8530 37 1 5.4552 2.4772 2.8139 38 1 4.1126 1.4399 3.3549 39 1 5.5791 2.1584 5.2517 40 1 3.9074 2.7438 5.4323 41 1 3.4561 5.1130 4.9213 42 1 4.8237 6.1255 4.3977 43 1 3.3480 5.4632 2.4871 44 1 5.0065 4.8410 2.3051 45 1 1.7674 -4.4206 0.5453 46 1 3.0762 -3.6404 -0.1213 47 1 0.3323 -1.9514 -1.8052 48 1 1.7793 -2.9558 -2.0614 49 1 0.6255 -4.8851 -1.0151 50 1 -0.8216 -3.8808 -0.7587 51 1 -2.1484 -7.0019 -2.1934 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336711198.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:39 Heat of formation + Delta-G solvation = -127.086860 kcal Electronic energy + Delta-G solvation = -29244.661218 eV Core-core repulsion = 25178.988289 eV Total energy + Delta-G solvation = -4065.672929 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.25271 -39.75112 -37.90664 -35.75250 -35.47657 -34.90465 -32.86838 -31.61053 -31.00775 -29.89228 -28.40447 -26.78106 -26.19828 -24.82992 -24.41325 -23.20405 -21.81287 -20.73117 -20.45735 -18.94911 -17.50664 -17.19205 -16.60989 -16.34486 -16.22084 -16.13467 -15.85171 -15.56008 -15.42983 -14.93417 -14.55389 -14.50563 -14.26983 -14.19200 -13.91192 -13.64670 -13.17555 -12.93431 -12.80800 -12.57053 -12.41425 -12.32771 -12.14311 -11.94845 -11.77664 -11.72262 -11.57822 -11.12911 -11.06773 -10.93007 -10.89613 -10.70167 -10.51924 -10.01104 -9.98301 -9.87289 -9.28352 -9.19006 -8.74628 -8.52380 -8.44892 -8.17181 -6.09655 -4.12838 2.85204 2.99788 3.25843 3.32661 3.35306 3.35703 3.53956 4.22691 4.33677 4.37922 4.52333 4.59219 4.68328 4.76308 4.80825 4.86093 4.95063 4.96909 5.09608 5.16441 5.18118 5.19672 5.23248 5.26474 5.28650 5.40101 5.47456 5.51633 5.52079 5.62009 5.68641 5.76763 5.81566 5.91883 6.29308 6.44834 6.51710 6.54608 6.59310 6.78528 6.86491 7.34036 7.49822 7.51184 7.58477 7.64012 7.87295 7.91303 8.29924 8.40876 8.93053 9.52013 11.01186 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.030700 B = 0.002063 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.840701 B =13570.998411 C =13933.455691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.610 5.610 3 C 0.086 3.914 4 C 0.097 3.903 5 H 0.104 0.896 6 O -0.541 6.541 7 C 0.025 3.975 8 N -0.525 5.525 9 C 0.014 3.986 10 C 0.065 3.935 11 O -0.388 6.388 12 C 0.064 3.936 13 C 0.017 3.983 14 C 0.527 3.473 15 O -0.542 6.542 16 C 0.074 3.926 17 H 0.098 0.902 18 N -0.831 5.831 19 C -0.137 4.137 20 C 0.025 3.975 21 C -0.523 4.523 22 H 0.054 0.946 23 C 0.058 3.942 24 N -0.892 5.892 25 Si 0.893 3.107 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.274 1.274 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.366 0.634 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.043 0.957 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.041 0.959 45 H 0.354 0.646 46 H 0.344 0.656 47 H 0.057 0.943 48 H 0.053 0.947 49 H 0.017 0.983 50 H 0.018 0.982 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.889 23.077 10.099 26.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.344 5.344 3 C -0.038 4.038 4 C 0.036 3.964 5 H 0.121 0.879 6 O -0.344 6.344 7 C -0.104 4.104 8 N -0.250 5.250 9 C -0.114 4.114 10 C -0.012 4.012 11 O -0.306 6.306 12 C -0.013 4.013 13 C -0.111 4.111 14 C 0.316 3.684 15 O -0.418 6.418 16 C -0.040 4.040 17 H 0.116 0.884 18 N -0.363 5.363 19 C -0.177 4.177 20 C -0.012 4.012 21 C -0.562 4.562 22 H 0.072 0.928 23 C -0.143 4.143 24 N -0.531 5.531 25 Si 0.720 3.280 26 H -0.206 1.206 27 H -0.211 1.211 28 H -0.199 1.199 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.213 0.787 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.059 0.941 45 H 0.169 0.831 46 H 0.158 0.842 47 H 0.075 0.925 48 H 0.072 0.928 49 H 0.036 0.964 50 H 0.037 0.963 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.506 22.908 11.561 27.033 hybrid contribution -0.437 -0.304 -3.042 3.089 sum 8.070 22.604 8.518 25.468 Atomic orbital electron populations 1.21904 0.78812 1.03666 1.01923 1.47628 1.07238 1.05065 1.74479 1.22020 0.98860 0.86196 0.96750 1.22379 0.85635 0.95492 0.92902 0.87875 1.86686 1.28302 1.62951 1.56507 1.22812 0.99950 0.98433 0.89158 1.62137 1.41728 1.01752 1.19408 1.22867 0.94434 0.97649 0.96435 1.22671 1.00229 0.83261 0.95063 1.87981 1.43882 1.16475 1.82268 1.22642 0.93914 0.92524 0.92203 1.22803 0.99236 0.90890 0.98197 1.20933 0.87900 0.85358 0.74198 1.90610 1.14203 1.87362 1.49625 1.21525 0.95062 0.89130 0.98319 0.88392 1.58761 1.10941 1.09359 1.57255 1.22375 1.00580 1.01697 0.93036 1.19093 0.93999 0.90631 0.97476 1.21168 1.30732 1.10720 0.93534 0.92773 1.25016 0.96123 0.96187 0.97008 1.69945 1.36364 1.16113 1.30706 0.86586 0.78129 0.78492 0.84754 1.20640 1.21145 1.19917 0.92363 0.90331 0.91046 0.90392 0.89263 0.78749 0.90142 0.93583 0.93909 0.89043 0.88319 0.92013 0.92167 0.88554 0.89673 0.94055 0.83079 0.84249 0.92455 0.92830 0.96441 0.96329 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 9.30 59.85 0.56 1.44 16 2 N -0.61 -7.96 2.80 -181.57 -0.51 -8.47 16 3 C 0.09 0.89 5.10 -4.04 -0.02 0.87 16 4 C 0.10 0.96 3.20 -26.73 -0.09 0.87 16 5 H 0.10 1.34 6.30 -51.93 -0.33 1.01 16 6 O -0.54 -5.38 12.01 -35.23 -0.42 -5.80 16 7 C 0.03 0.20 4.59 -3.82 -0.02 0.19 16 8 N -0.53 -4.65 4.67 -234.29 -1.09 -5.75 16 9 C 0.01 0.13 5.44 -3.70 -0.02 0.11 16 10 C 0.06 0.58 7.01 37.21 0.26 0.84 16 11 O -0.39 -3.85 10.83 -35.23 -0.38 -4.23 16 12 C 0.06 0.48 7.01 37.21 0.26 0.74 16 13 C 0.02 0.12 5.65 -3.71 -0.02 0.10 16 14 C 0.53 8.83 6.93 -10.98 -0.08 8.75 16 15 O -0.54 -10.44 15.83 5.56 0.09 -10.36 16 16 C 0.07 1.29 2.47 -68.86 -0.17 1.12 16 17 H 0.10 1.64 6.31 -51.93 -0.33 1.31 16 18 N -0.83 -14.63 8.94 -5.65 -0.05 -14.68 16 19 C -0.14 -2.69 4.71 -26.73 -0.13 -2.82 16 20 C 0.03 0.61 4.74 -27.89 -0.13 0.47 16 21 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 22 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 23 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 24 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 25 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.06 0.64 7.65 -51.93 -0.40 0.24 16 30 H 0.08 0.94 5.94 -51.93 -0.31 0.63 16 31 H 0.07 0.60 6.88 -51.93 -0.36 0.24 16 32 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 33 H 0.09 1.05 7.42 -51.93 -0.39 0.66 16 34 H 0.37 2.30 8.79 45.56 0.40 2.70 16 35 H 0.08 0.50 8.04 -51.93 -0.42 0.08 16 36 H 0.05 0.38 8.12 -51.93 -0.42 -0.04 16 37 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 0.95 6.29 -51.93 -0.33 0.62 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.49 8.09 -51.93 -0.42 0.07 16 44 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.35 6.22 7.55 -39.29 -0.30 5.93 16 46 H 0.34 6.12 8.58 -39.29 -0.34 5.78 16 47 H 0.06 1.08 6.94 -51.93 -0.36 0.72 16 48 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 50 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 51 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 398.97 15.07 6.01 6.01 Total: -1.00 -33.16 398.97 -8.63 -41.79 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -7.98 Total: 10.84 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 0.00 Total: -0.35 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.92 Total: -54.03 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.72 Total: -20.39 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.16 -8.63 -41.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336711198.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.300 kcal (2) G-P(sol) polarization free energy of solvation -33.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds