Wall clock time and date at job start Tue Mar 31 2020 05:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 119.99817 * 2 1 4 4 C 1.53007 * 109.47284 * 270.00134 * 3 2 1 5 5 H 1.08998 * 109.46674 * 59.99635 * 4 3 2 6 6 O 1.42898 * 109.46891 * 300.00068 * 4 3 2 7 7 C 1.52997 * 109.47128 * 180.02562 * 4 3 2 8 8 N 1.46908 * 109.46719 * 184.99648 * 7 4 3 9 9 C 1.47024 * 110.99261 * 66.32173 * 8 7 4 10 10 C 1.53103 * 109.24985 * 182.34870 * 9 8 7 11 11 O 1.43012 * 109.29295 * 303.21723 * 10 9 8 12 12 C 1.43011 * 113.74271 * 58.65008 * 11 10 9 13 13 C 1.47018 * 110.99661 * 189.99712 * 8 7 4 14 14 C 1.34774 * 120.00102 * 180.02562 * 2 1 3 15 15 O 1.21279 * 120.00070 * 179.97438 * 14 2 1 16 16 C 1.50702 * 120.00037 * 359.97438 * 14 2 1 17 17 H 1.09001 * 109.47088 * 40.00512 * 16 14 2 18 18 N 1.46907 * 109.46705 * 160.00049 * 16 14 2 19 19 C 1.52995 * 109.47269 * 280.00062 * 16 14 2 20 20 C 1.52996 * 109.47316 * 174.99981 * 19 16 14 21 21 C 1.50696 * 109.47392 * 180.02562 * 20 19 16 22 22 H 1.08003 * 120.00207 * 359.97438 * 21 20 19 23 23 C 1.37876 * 120.00384 * 180.02562 * 21 20 19 24 24 N 1.31523 * 119.99570 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00410 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47018 * 59.99674 * 25 23 21 27 27 H 1.48501 * 109.47351 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47222 * 299.99802 * 25 23 21 29 29 H 1.09000 * 109.47356 * 90.00450 * 1 2 3 30 30 H 1.09008 * 109.47279 * 209.99622 * 1 2 3 31 31 H 1.08996 * 109.47615 * 329.99693 * 1 2 3 32 32 H 1.08998 * 109.47133 * 149.99994 * 3 2 1 33 33 H 1.09006 * 109.47406 * 29.99635 * 3 2 1 34 34 H 0.96701 * 113.99894 * 300.00253 * 6 4 3 35 35 H 1.09001 * 109.47059 * 65.00273 * 7 4 3 36 36 H 1.08995 * 109.46804 * 304.99511 * 7 4 3 37 37 H 1.08998 * 109.47369 * 62.43595 * 9 8 7 38 38 H 1.08998 * 109.54483 * 302.29802 * 9 8 7 39 39 H 1.09002 * 109.50635 * 183.25881 * 10 9 8 40 40 H 1.09003 * 109.50698 * 63.17493 * 10 9 8 41 41 H 1.08997 * 109.50806 * 61.26171 * 12 11 10 42 42 H 1.08997 * 109.50924 * 181.35636 * 12 11 10 43 43 H 1.08994 * 109.50209 * 57.67478 * 13 8 7 44 44 H 1.08997 * 109.50514 * 297.54292 * 13 8 7 45 45 H 1.00896 * 111.00031 * 296.04684 * 18 16 14 46 46 H 1.00900 * 111.00145 * 60.00640 * 18 16 14 47 47 H 1.09008 * 109.47338 * 295.00112 * 19 16 14 48 48 H 1.08996 * 109.47098 * 54.99808 * 19 16 14 49 49 H 1.08998 * 109.47058 * 300.00477 * 20 19 16 50 50 H 1.09002 * 109.46926 * 60.00246 * 20 19 16 51 51 H 0.96999 * 119.99476 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7105 -1.4426 5 1 1.4999 1.8407 -1.9563 6 8 3.2247 0.7146 -2.1162 7 6 3.2179 3.0352 -1.4425 8 7 3.3582 3.5196 -2.8223 9 6 2.0503 3.8779 -3.3903 10 6 2.2356 4.3205 -4.8442 11 8 3.1639 5.4073 -4.8926 12 6 4.4483 5.0921 -4.3483 13 6 4.2857 4.6583 -2.8891 14 6 2.1388 -1.1672 -0.0005 15 8 3.3516 -1.1672 -0.0010 16 6 1.3854 -2.4723 -0.0005 17 1 0.5217 -2.3932 -0.6608 18 7 2.2676 -3.5469 -0.4748 19 6 0.9140 -2.7891 1.4201 20 6 0.0441 -4.0475 1.4001 21 6 -0.4207 -4.3592 2.7993 22 1 -0.1249 -3.7235 3.6208 23 6 -1.2228 -5.4565 3.0310 24 7 -1.5826 -6.2309 2.0307 25 14 -1.7984 -5.8432 4.7655 26 1 -2.5911 -4.7022 5.2899 27 1 -2.6417 -7.0653 4.7462 28 1 -0.6193 -6.0699 5.6393 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3634 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 3.1498 1.1384 0.5138 33 1 1.6083 2.0284 0.5138 34 1 4.0872 0.5461 -1.7126 35 1 4.2062 2.8837 -1.0084 36 1 2.6708 3.7708 -0.8530 37 1 1.6151 4.6942 -2.8139 38 1 1.3881 3.0129 -3.3549 39 1 1.2771 4.6421 -5.2517 40 1 2.6199 3.4871 -5.4323 41 1 4.8973 4.2809 -4.9213 42 1 5.0904 5.9715 -4.3977 43 1 5.2547 4.3624 -2.4871 44 1 3.8865 5.4876 -2.3051 45 1 2.5409 -3.3936 -1.4339 46 1 3.0764 -3.6404 0.1212 47 1 1.7795 -2.9558 2.0615 48 1 0.3324 -1.9515 1.8052 49 1 -0.8213 -3.8809 0.7588 50 1 0.6257 -4.8851 1.0151 51 1 -2.1465 -7.0031 2.1938 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336711199.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:44 Heat of formation + Delta-G solvation = -126.019085 kcal Electronic energy + Delta-G solvation = -29279.459739 eV Core-core repulsion = 25213.833112 eV Total energy + Delta-G solvation = -4065.626627 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.31942 -39.83496 -37.82479 -35.73557 -35.27228 -35.00199 -32.79098 -31.66753 -30.95027 -30.08491 -28.40181 -26.76051 -26.28914 -24.79514 -24.48468 -23.02198 -21.73219 -20.79713 -20.29472 -19.07104 -17.47287 -17.07041 -16.68002 -16.42179 -16.20349 -16.02615 -15.88021 -15.64293 -15.49503 -15.27511 -14.84014 -14.45527 -14.38751 -14.22834 -13.93334 -13.32609 -13.27783 -12.97066 -12.86876 -12.51930 -12.41416 -12.15316 -11.97686 -11.93418 -11.79529 -11.77813 -11.52349 -11.16928 -10.98765 -10.87426 -10.65233 -10.55253 -10.44800 -10.08280 -9.98535 -9.77803 -9.35362 -9.01252 -8.79812 -8.58176 -8.33260 -8.16909 -5.94075 -3.96468 2.78867 2.96895 3.30662 3.35118 3.40042 3.42149 3.47299 4.26400 4.32173 4.45666 4.49060 4.51648 4.65764 4.70994 4.73003 4.82798 4.88067 4.89437 4.98943 5.10380 5.12611 5.14881 5.21971 5.22339 5.33287 5.35017 5.41164 5.42394 5.47118 5.54081 5.59190 5.74895 5.78653 5.85626 6.35317 6.45158 6.48379 6.54128 6.66091 6.71612 7.07902 7.34009 7.55306 7.64272 7.75354 7.84958 7.95775 8.13272 8.32353 8.47811 9.11373 9.66561 11.16672 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.030089 B = 0.002034 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.335683 B =13764.175898 C =13916.260034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.610 5.610 3 C 0.081 3.919 4 C 0.099 3.901 5 H 0.095 0.905 6 O -0.539 6.539 7 C 0.025 3.975 8 N -0.525 5.525 9 C 0.015 3.985 10 C 0.064 3.936 11 O -0.387 6.387 12 C 0.064 3.936 13 C 0.017 3.983 14 C 0.494 3.506 15 O -0.552 6.552 16 C 0.079 3.921 17 H 0.096 0.904 18 N -0.807 5.807 19 C -0.097 4.097 20 C 0.032 3.968 21 C -0.523 4.523 22 H 0.051 0.949 23 C 0.058 3.942 24 N -0.892 5.892 25 Si 0.889 3.111 26 H -0.278 1.278 27 H -0.288 1.288 28 H -0.278 1.278 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.376 0.624 35 H 0.081 0.919 36 H 0.043 0.957 37 H 0.041 0.959 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.041 0.959 45 H 0.335 0.665 46 H 0.346 0.654 47 H 0.052 0.948 48 H 0.054 0.946 49 H 0.012 0.988 50 H 0.035 0.965 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.792 24.313 -11.228 28.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.343 5.343 3 C -0.044 4.044 4 C 0.037 3.963 5 H 0.113 0.887 6 O -0.344 6.344 7 C -0.104 4.104 8 N -0.250 5.250 9 C -0.113 4.113 10 C -0.013 4.013 11 O -0.306 6.306 12 C -0.013 4.013 13 C -0.111 4.111 14 C 0.282 3.718 15 O -0.430 6.430 16 C -0.037 4.037 17 H 0.114 0.886 18 N -0.335 5.335 19 C -0.135 4.135 20 C -0.005 4.005 21 C -0.562 4.562 22 H 0.069 0.931 23 C -0.143 4.143 24 N -0.531 5.531 25 Si 0.717 3.283 26 H -0.204 1.204 27 H -0.213 1.213 28 H -0.203 1.203 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.224 0.776 35 H 0.100 0.900 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.115 0.885 43 H 0.104 0.896 44 H 0.059 0.941 45 H 0.147 0.853 46 H 0.160 0.840 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.031 0.969 50 H 0.054 0.946 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.332 23.414 -11.876 27.545 hybrid contribution 0.403 1.142 1.941 2.287 sum 8.735 24.557 -9.936 27.893 Atomic orbital electron populations 1.22026 0.79036 1.04354 1.02035 1.47779 1.07041 1.05371 1.74148 1.22120 0.98850 0.86467 0.96946 1.22276 0.94943 0.86361 0.92698 0.88676 1.86570 1.33288 1.58504 1.56044 1.22836 1.01530 0.97073 0.88947 1.62105 1.10440 1.32932 1.19552 1.22853 0.91448 1.00423 0.96554 1.22665 0.93579 0.90035 0.95024 1.87979 1.22824 1.37484 1.82304 1.22655 0.85386 1.01063 0.92207 1.22805 0.97803 0.92302 0.98176 1.22626 0.88707 0.86739 0.73709 1.90569 1.14407 1.87527 1.50498 1.21825 0.95817 0.84767 1.01249 0.88574 1.59003 1.23919 1.43718 1.06824 1.21707 1.00187 1.01384 0.90270 1.19004 0.93678 0.91452 0.96367 1.21234 1.30497 1.10545 0.93889 0.93093 1.24995 0.96387 0.96293 0.96661 1.69969 1.36453 1.16088 1.30576 0.86711 0.78684 0.77617 0.85253 1.20397 1.21336 1.20347 0.92676 0.89042 0.91309 0.89736 0.90182 0.77641 0.90035 0.93842 0.94060 0.89256 0.88389 0.91988 0.92088 0.88471 0.89581 0.94067 0.85329 0.83988 0.92896 0.92762 0.96914 0.94646 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 9.90 59.84 0.59 1.32 16 2 N -0.61 -7.62 2.83 -181.57 -0.51 -8.13 16 3 C 0.08 0.81 5.19 -4.04 -0.02 0.79 16 4 C 0.10 0.92 3.20 -26.73 -0.09 0.84 16 5 H 0.10 0.91 6.30 -51.93 -0.33 0.59 16 6 O -0.54 -6.62 12.09 -44.03 -0.53 -7.15 16 7 C 0.02 0.19 4.59 -3.82 -0.02 0.17 16 8 N -0.53 -4.41 4.67 -234.29 -1.09 -5.50 16 9 C 0.02 0.12 5.44 -3.70 -0.02 0.10 16 10 C 0.06 0.50 7.01 37.21 0.26 0.76 16 11 O -0.39 -3.57 10.83 -35.23 -0.38 -3.96 16 12 C 0.06 0.46 7.01 37.21 0.26 0.72 16 13 C 0.02 0.12 5.65 -3.71 -0.02 0.10 16 14 C 0.49 7.72 6.42 -10.99 -0.07 7.65 16 15 O -0.55 -9.56 14.62 -3.24 -0.05 -9.61 16 16 C 0.08 1.34 2.31 -68.86 -0.16 1.19 16 17 H 0.10 1.59 7.21 -51.93 -0.37 1.22 16 18 N -0.81 -13.90 8.44 -5.65 -0.05 -13.95 16 19 C -0.10 -1.95 4.45 -26.74 -0.12 -2.07 16 20 C 0.03 0.81 4.86 -27.89 -0.14 0.68 16 21 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 22 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 23 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 24 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 25 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 1.15 4.83 -51.92 -0.25 0.90 16 31 H 0.07 0.57 7.89 -51.93 -0.41 0.16 16 32 H 0.08 0.94 7.42 -51.93 -0.39 0.55 16 33 H 0.08 0.62 7.89 -51.93 -0.41 0.21 16 34 H 0.38 4.37 8.45 45.56 0.38 4.76 16 35 H 0.08 0.60 8.04 -51.93 -0.42 0.18 16 36 H 0.04 0.30 8.12 -51.93 -0.42 -0.12 16 37 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 0.70 6.29 -51.93 -0.33 0.37 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.09 0.53 8.09 -51.93 -0.42 0.11 16 44 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.33 5.16 9.06 -39.29 -0.36 4.80 16 46 H 0.35 6.00 8.58 -39.29 -0.34 5.67 16 47 H 0.05 1.11 8.14 -51.92 -0.42 0.69 16 48 H 0.05 1.02 6.43 -51.93 -0.33 0.68 16 49 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 51 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 399.91 15.07 6.03 6.03 Total: -1.00 -33.37 399.91 -8.96 -42.33 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -8.13 Total: 10.55 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 0.05 Total: -1.17 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.92 Total: -53.60 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.96 Total: -20.72 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.37 -8.96 -42.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336711199.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.690 kcal (2) G-P(sol) polarization free energy of solvation -33.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds