Wall clock time and date at job start Tue Mar 31 2020 05:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42908 * 114.00114 * 2 1 4 4 C 1.52995 * 109.47048 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47524 * 65.00163 * 4 3 2 6 6 C 1.34776 * 120.00158 * 179.72114 * 5 4 3 7 7 O 1.21282 * 120.00039 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99986 * 179.97438 * 6 5 4 9 9 N 1.46900 * 109.47140 * 180.02562 * 8 6 5 10 10 C 1.46962 * 110.99677 * 293.79968 * 9 8 6 11 11 C 1.53049 * 109.36083 * 176.81061 * 10 9 8 12 12 N 1.46961 * 109.36336 * 58.40424 * 11 10 9 13 13 C 1.46900 * 110.99966 * 176.81076 * 12 11 10 14 14 C 1.52993 * 109.47078 * 199.50115 * 13 12 11 15 15 O 1.42908 * 109.46959 * 64.64703 * 14 13 12 16 16 C 1.42894 * 113.99925 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47294 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99669 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00389 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00059 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00226 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46981 * 60.00250 * 21 19 17 23 23 H 1.48502 * 109.47251 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47208 * 300.00628 * 21 19 17 25 25 C 1.46961 * 110.87658 * 300.67330 * 12 11 10 26 26 C 1.46951 * 110.99974 * 170.00132 * 9 8 6 27 27 H 1.09000 * 109.46948 * 299.99927 * 1 2 3 28 28 H 1.09006 * 109.46881 * 60.00003 * 1 2 3 29 29 H 1.09000 * 109.46939 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46564 * 60.00015 * 3 2 1 31 31 H 1.09001 * 109.46667 * 300.00156 * 3 2 1 32 32 H 1.09003 * 109.47231 * 304.99680 * 4 3 2 33 33 H 1.09006 * 109.46865 * 185.00074 * 4 3 2 34 34 H 0.97003 * 119.99128 * 359.97438 * 5 4 3 35 35 H 1.08997 * 109.47182 * 300.00371 * 8 6 5 36 36 H 1.09004 * 109.46614 * 59.99998 * 8 6 5 37 37 H 1.08993 * 109.48890 * 296.77753 * 10 9 8 38 38 H 1.09006 * 109.48988 * 56.84788 * 10 9 8 39 39 H 1.09002 * 109.49089 * 298.43548 * 11 10 9 40 40 H 1.08995 * 109.49025 * 178.36755 * 11 10 9 41 41 H 1.09000 * 109.46854 * 319.50798 * 13 12 11 42 42 H 1.09002 * 109.47036 * 79.50324 * 13 12 11 43 43 H 1.09000 * 109.47533 * 184.64318 * 14 13 12 44 44 H 1.08992 * 109.47541 * 304.64742 * 14 13 12 45 45 H 1.09009 * 109.47534 * 299.99864 * 16 15 14 46 46 H 1.09004 * 109.47271 * 59.99654 * 16 15 14 47 47 H 0.96994 * 120.00030 * 180.02562 * 20 19 17 48 48 H 1.08993 * 109.49146 * 299.35669 * 25 12 11 49 49 H 1.09006 * 109.48607 * 179.28711 * 25 12 11 50 50 H 1.09004 * 109.48699 * 303.15342 * 26 9 8 51 51 H 1.09002 * 109.48857 * 63.22050 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 5.2887 0.3612 -1.4789 7 8 6.1058 0.6914 -0.6456 8 6 5.7416 -0.2773 -2.7667 9 7 7.2064 -0.3877 -2.7699 10 6 7.8345 0.9406 -2.8021 11 6 9.3551 0.7848 -2.7242 12 7 9.8185 -0.0412 -3.8479 13 6 11.2833 -0.1516 -3.8511 14 6 11.7597 -0.5763 -5.2415 15 8 11.4487 0.4503 -6.1858 16 6 11.8543 0.1521 -7.5231 17 6 11.4784 1.2962 -8.4291 18 1 10.9799 2.1644 -8.0239 19 6 11.7716 1.2351 -9.7748 20 7 12.3790 0.1780 -10.2682 21 14 11.3049 2.6530 -10.8978 22 1 11.9832 3.8918 -10.4389 23 1 11.7276 2.3437 -12.2874 24 1 9.8337 2.8511 -10.8598 25 6 9.1904 -1.3694 -3.8155 26 6 7.6698 -1.2137 -3.8935 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8514 0.5682 0.8410 33 1 3.9785 2.1766 0.0889 34 1 3.3224 0.3034 -1.9206 35 1 5.3025 -1.2711 -2.8535 36 1 5.4212 0.3363 -3.6087 37 1 7.5679 1.4464 -3.7300 38 1 7.4852 1.5287 -1.9534 39 1 9.6236 0.3033 -1.7839 40 1 9.8244 1.7671 -2.7771 41 1 11.7210 0.8136 -3.5961 42 1 11.5932 -0.8961 -3.1177 43 1 12.8374 -0.7382 -5.2227 44 1 11.2586 -1.5000 -5.5309 45 1 12.9341 0.0056 -7.5513 46 1 11.3555 -0.7567 -7.8600 47 1 12.5856 0.1352 -11.2149 48 1 9.4570 -1.8753 -2.8877 49 1 9.5396 -1.9576 -4.6642 50 1 7.2005 -2.1960 -3.8405 51 1 7.4013 -0.7322 -4.8338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343890144.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:03 Heat of formation + Delta-G solvation = -108.355658 kcal Electronic energy + Delta-G solvation = -28237.063627 eV Core-core repulsion = 24172.202944 eV Total energy + Delta-G solvation = -4064.860683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.22314 -38.96031 -38.31668 -36.67969 -35.20364 -34.80176 -32.63653 -30.98121 -30.79276 -29.84078 -27.80798 -26.85935 -26.39354 -24.44164 -23.45974 -22.79834 -22.21401 -21.14875 -20.71997 -19.64059 -17.36757 -17.23951 -16.93654 -16.37789 -16.28002 -15.77828 -15.66701 -15.53784 -15.18324 -14.91077 -14.73665 -14.46342 -14.38144 -14.21647 -14.07603 -13.47534 -13.40541 -13.17363 -12.94034 -12.69489 -12.29048 -12.20890 -12.07855 -11.79050 -11.69663 -11.59775 -11.24501 -11.10741 -11.02374 -10.80140 -10.78027 -10.52368 -10.34662 -10.28025 -9.97168 -9.77182 -9.35683 -9.01666 -8.71251 -8.38251 -8.05357 -7.93542 -6.04100 -4.04770 2.47684 2.77432 3.16315 3.36080 3.38219 3.42669 3.88622 4.12646 4.34158 4.41037 4.52453 4.63393 4.73152 4.80628 4.86110 4.90163 4.95344 5.05004 5.09164 5.12583 5.20865 5.26437 5.32067 5.39712 5.42052 5.50985 5.51228 5.62496 5.74003 5.78572 5.92105 5.99799 6.05301 6.12859 6.14689 6.18454 6.24828 6.38861 6.52074 6.81799 6.97667 7.19825 7.25276 7.37961 7.38695 7.52966 7.87627 8.05164 8.25349 8.72052 9.10432 9.59726 11.07536 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.015567 B = 0.001949 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.280423 B =14360.382069 C =15432.842375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.048 3.952 4 C 0.124 3.876 5 N -0.731 5.731 6 C 0.515 3.485 7 O -0.521 6.521 8 C 0.037 3.963 9 N -0.523 5.523 10 C 0.054 3.946 11 C 0.063 3.937 12 N -0.526 5.526 13 C 0.062 3.938 14 C 0.070 3.930 15 O -0.380 6.380 16 C 0.195 3.805 17 C -0.510 4.510 18 H 0.065 0.935 19 C 0.055 3.945 20 N -0.900 5.900 21 Si 0.907 3.093 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.059 3.941 26 C 0.058 3.942 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.402 0.598 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.041 0.959 38 H 0.093 0.907 39 H 0.038 0.962 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.041 0.959 43 H 0.037 0.963 44 H 0.034 0.966 45 H 0.001 0.999 46 H 0.002 0.998 47 H 0.263 0.737 48 H 0.037 0.963 49 H 0.082 0.918 50 H 0.077 0.923 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.302 -1.723 21.230 30.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C -0.029 4.029 4 C 0.000 4.000 5 N -0.386 5.386 6 C 0.301 3.699 7 O -0.396 6.396 8 C -0.095 4.095 9 N -0.249 5.249 10 C -0.074 4.074 11 C -0.065 4.065 12 N -0.251 5.251 13 C -0.066 4.066 14 C -0.009 4.009 15 O -0.300 6.300 16 C 0.120 3.880 17 C -0.548 4.548 18 H 0.084 0.916 19 C -0.146 4.146 20 N -0.540 5.540 21 Si 0.735 3.265 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.069 4.069 26 C -0.070 4.070 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.236 0.764 35 H 0.121 0.879 36 H 0.083 0.917 37 H 0.059 0.941 38 H 0.111 0.889 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.019 0.981 46 H 0.020 0.980 47 H 0.073 0.927 48 H 0.055 0.945 49 H 0.101 0.899 50 H 0.096 0.904 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -21.596 -1.542 21.724 30.671 hybrid contribution -0.678 0.434 -1.133 1.389 sum -22.274 -1.108 20.591 30.354 Atomic orbital electron populations 1.22776 0.80643 1.03070 1.00107 1.87940 1.20006 1.27424 1.95456 1.22831 0.93187 0.85458 1.01464 1.21332 0.91688 0.99276 0.87709 1.45913 1.07731 1.64270 1.20662 1.20631 0.81836 0.78499 0.88935 1.90686 1.52430 1.49871 1.46565 1.21924 0.90896 1.01995 0.94662 1.61892 1.03448 1.15415 1.44100 1.22336 0.94239 0.89441 1.01371 1.22092 0.94466 0.98049 0.91903 1.62046 1.06552 1.13358 1.43183 1.22122 0.87236 1.01332 0.95916 1.22215 0.97063 0.92001 0.89575 1.87937 1.82208 1.40855 1.18963 1.20151 0.93837 0.96589 0.77413 1.21034 1.38260 1.03504 0.91993 0.91648 1.24944 0.95285 0.96500 0.97863 1.69959 1.41637 1.28584 1.13820 0.86413 0.78962 0.82096 0.79072 1.20079 1.21245 1.20090 1.22152 0.93229 0.90845 1.00723 1.22191 0.95575 0.97246 0.91939 0.93938 0.93898 0.89410 0.91521 0.92420 0.90571 0.89915 0.76353 0.87856 0.91709 0.94123 0.88923 0.94424 0.90302 0.90309 0.94100 0.94468 0.94762 0.98084 0.97990 0.92738 0.94458 0.89940 0.90450 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 11.01 101.05 1.11 1.23 16 2 O -0.39 -2.57 10.65 -35.23 -0.38 -2.94 16 3 C 0.05 0.23 6.07 37.16 0.23 0.46 16 4 C 0.12 0.86 6.06 -4.04 -0.02 0.83 16 5 N -0.73 -5.60 5.50 -60.29 -0.33 -5.93 16 6 C 0.52 5.54 7.53 -10.98 -0.08 5.46 16 7 O -0.52 -7.61 14.34 5.56 0.08 -7.53 16 8 C 0.04 0.36 5.45 -4.97 -0.03 0.33 16 9 N -0.52 -6.69 4.45 -235.91 -1.05 -7.74 16 10 C 0.05 0.75 5.26 -3.76 -0.02 0.73 16 11 C 0.06 0.93 5.57 -3.77 -0.02 0.91 16 12 N -0.53 -8.59 4.58 -234.47 -1.07 -9.66 16 13 C 0.06 1.00 5.39 -3.83 -0.02 0.98 16 14 C 0.07 1.35 6.13 37.15 0.23 1.58 16 15 O -0.38 -9.57 10.27 -35.23 -0.36 -9.93 16 16 C 0.19 5.51 5.69 36.01 0.20 5.72 16 17 C -0.51 -15.43 9.43 -34.44 -0.32 -15.75 16 18 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 19 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.43 13.29 55.43 0.74 -26.70 16 21 Si 0.91 22.29 29.54 -169.99 -5.02 17.27 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C 0.06 0.84 5.43 -3.77 -0.02 0.82 16 26 C 0.06 0.74 5.61 -3.77 -0.02 0.72 16 27 H 0.04 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.04 0.13 8.14 -51.93 -0.42 -0.30 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.40 2.21 8.47 -40.82 -0.35 1.86 16 35 H 0.10 0.80 8.03 -51.93 -0.42 0.38 16 36 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.32 5.85 -51.93 -0.30 1.02 16 39 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 1.13 8.00 -51.93 -0.42 0.72 16 41 H 0.08 1.27 7.85 -51.93 -0.41 0.86 16 42 H 0.04 0.57 8.00 -51.93 -0.42 0.15 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.03 0.65 6.74 -51.93 -0.35 0.30 16 45 H 0.00 0.04 8.14 -51.92 -0.42 -0.38 16 46 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 48 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.08 1.20 6.72 -51.93 -0.35 0.86 16 50 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 51 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 409.96 15.07 6.18 6.18 Total: -1.00 -36.16 409.96 -9.42 -45.58 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -9.31 Total: -4.11 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 1.11 Total: 5.52 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -1.72 Total: -50.03 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.66 Total: -20.41 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.16 -9.42 -45.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343890144.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.777 kcal (2) G-P(sol) polarization free energy of solvation -36.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds