Wall clock time and date at job start Tue Mar 31 2020 06:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99711 * 2 1 4 4 H 1.48492 * 109.47095 * 270.00051 * 3 2 1 5 5 H 1.48504 * 109.47221 * 30.00365 * 3 2 1 6 6 H 1.48506 * 109.46864 * 150.00121 * 3 2 1 7 7 C 1.37877 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99828 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99923 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.63550 * 300.69725 * 9 7 2 11 11 C 1.55152 * 110.71825 * 177.55974 * 9 7 2 12 12 C 1.54909 * 101.58032 * 205.95483 * 11 9 7 13 13 N 1.47422 * 104.83564 * 37.00513 * 12 11 9 14 14 C 1.34778 * 125.65119 * 155.90415 * 13 12 11 15 15 O 1.21691 * 119.99764 * 179.97438 * 14 13 12 16 16 C 1.46650 * 120.00007 * 359.97438 * 14 13 12 17 17 C 1.36539 * 125.98881 * 180.02562 * 16 14 13 18 18 C 1.40369 * 106.70817 * 179.97438 * 17 16 14 19 19 C 1.35122 * 107.11417 * 359.97438 * 18 17 16 20 20 S 1.76202 * 125.61493 * 180.02562 * 19 18 17 21 21 N 1.65598 * 107.21944 * 90.00061 * 20 19 18 22 22 O 1.42105 * 106.40351 * 203.53592 * 20 19 18 23 23 O 1.42098 * 106.40448 * 336.45843 * 20 19 18 24 24 O 1.33928 * 108.76955 * 359.77017 * 19 18 17 25 25 C 1.47027 * 108.69865 * 335.87617 * 13 12 11 26 26 H 0.97000 * 119.99959 * 359.97438 * 1 2 3 27 27 H 0.96700 * 114.00311 * 56.86306 * 10 9 7 28 28 H 1.09005 * 111.00538 * 324.02517 * 11 9 7 29 29 H 1.08998 * 111.00529 * 87.84162 * 11 9 7 30 30 H 1.09002 * 110.37204 * 155.85017 * 12 11 9 31 31 H 1.09001 * 110.36536 * 278.16950 * 12 11 9 32 32 H 1.08003 * 126.64798 * 359.97438 * 17 16 14 33 33 H 1.08004 * 126.43838 * 179.97438 * 18 17 16 34 34 H 0.96993 * 120.00652 * 149.99847 * 21 20 19 35 35 H 0.97005 * 120.00317 * 330.00190 * 21 20 19 36 36 H 1.09003 * 109.87825 * 241.63649 * 25 13 12 37 37 H 1.09001 * 109.88209 * 120.47703 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 8 0.4076 -2.5947 1.1479 11 6 2.2323 -3.6994 -0.0639 12 6 1.3489 -4.7895 -0.7204 13 7 0.5283 -4.0659 -1.7085 14 6 -0.0369 -4.6058 -2.8065 15 8 -0.6974 -3.9102 -3.5554 16 6 0.1439 -6.0315 -3.0987 17 6 -0.3704 -6.7023 -4.1709 18 6 0.0508 -8.0361 -4.0524 19 6 0.7948 -8.1197 -2.9276 20 16 1.5672 -9.5798 -2.3144 21 7 3.0824 -9.6489 -2.9788 22 8 1.7496 -9.3816 -0.9191 23 8 0.8415 -10.6752 -2.8554 24 8 0.8531 -6.9087 -2.3585 25 6 0.4282 -2.6578 -1.2974 26 1 -0.4850 0.8400 0.0004 27 1 -0.2247 -1.8680 1.2334 28 1 3.0948 -3.4670 -0.6886 29 1 2.5461 -3.9997 0.9358 30 1 1.9712 -5.5343 -1.2166 31 1 0.7125 -5.2631 0.0272 32 1 -0.9827 -6.2872 -4.9579 33 1 -0.1770 -8.8436 -4.7325 34 1 3.8064 -10.0735 -2.4925 35 1 3.2462 -9.2647 -3.8543 36 1 -0.6140 -2.4001 -1.1087 37 1 0.8361 -2.0142 -2.0768 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362939254.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:12 Heat of formation + Delta-G solvation = -131.070412 kcal Electronic energy + Delta-G solvation = -26524.911447 eV Core-core repulsion = 22396.600703 eV Total energy + Delta-G solvation = -4128.310743 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.081 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.99358 -39.45952 -37.59221 -37.42393 -36.27546 -34.56058 -33.65185 -33.45569 -32.27055 -30.91906 -29.92791 -27.96977 -25.70929 -23.86569 -22.49676 -22.14669 -20.08295 -19.96552 -19.63521 -18.77948 -17.90956 -17.38976 -17.22425 -16.69187 -16.56636 -15.76753 -15.64122 -15.16151 -14.84931 -14.48604 -14.08811 -13.69251 -13.49601 -13.20851 -13.03251 -12.92045 -12.64558 -12.52226 -12.41245 -12.31294 -11.94015 -11.73473 -11.59621 -11.13649 -10.96484 -10.88741 -10.73230 -10.57441 -10.49566 -10.25953 -10.05661 -9.42025 -9.40994 -8.75561 -8.42923 -8.15383 -6.36888 -4.46162 -0.18066 0.45873 1.74474 2.31694 2.78061 3.16124 3.19006 3.23725 3.24543 3.26860 3.35230 4.20387 4.29879 4.43653 4.54346 4.90958 5.04522 5.19977 5.31159 5.32789 5.54912 5.66360 5.71885 5.87089 5.95202 6.07519 6.32568 6.40322 6.59344 6.66510 6.70583 6.73048 7.12762 7.23975 7.64960 7.80869 7.91591 8.23758 8.57897 9.22574 9.32781 10.70859 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.023389 B = 0.003166 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.846722 B = 8841.750906 C = 9451.048498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.249 3.751 10 O -0.584 6.584 11 C -0.117 4.117 12 C 0.094 3.906 13 N -0.590 5.590 14 C 0.591 3.409 15 O -0.521 6.521 16 C 0.012 3.988 17 C -0.161 4.161 18 C -0.088 4.088 19 C -0.579 4.579 20 S 2.738 3.262 21 N -1.244 6.244 22 O -0.940 6.940 23 O -0.939 6.939 24 O -0.099 6.099 25 C 0.100 3.900 26 H 0.272 0.728 27 H 0.385 0.615 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.172 0.828 33 H 0.174 0.826 34 H 0.425 0.575 35 H 0.419 0.581 36 H 0.072 0.928 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.889 -17.064 -7.638 19.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.577 4.577 8 H 0.087 0.913 9 C 0.208 3.792 10 O -0.393 6.393 11 C -0.154 4.154 12 C -0.029 4.029 13 N -0.321 5.321 14 C 0.376 3.624 15 O -0.400 6.400 16 C -0.046 4.046 17 C -0.182 4.182 18 C -0.109 4.109 19 C -0.710 4.710 20 S 2.818 3.182 21 N -0.920 5.920 22 O -0.930 6.930 23 O -0.928 6.928 24 O 0.008 5.992 25 C -0.021 4.021 26 H 0.082 0.918 27 H 0.237 0.763 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.190 0.810 33 H 0.192 0.808 34 H 0.257 0.743 35 H 0.247 0.753 36 H 0.091 0.909 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.280 -17.590 -7.015 19.415 hybrid contribution 0.176 1.985 -1.038 2.247 sum 4.456 -15.605 -8.053 18.117 Atomic orbital electron populations 1.69635 1.06033 1.28141 1.49607 1.25094 0.95080 0.99889 0.93238 0.86363 0.79810 0.82211 0.78315 1.20395 1.20925 1.19614 1.21507 0.93794 0.89912 1.52494 0.91308 1.19493 0.86104 0.92298 0.81301 1.86107 1.53578 1.52740 1.46882 1.22777 0.97441 0.94585 1.00644 1.22595 0.93709 0.95443 0.91128 1.48844 1.48097 1.13457 1.21701 1.16237 0.81463 0.82691 0.81983 1.90890 1.41225 1.59147 1.48727 1.23283 0.96775 0.91707 0.92830 1.22139 1.03514 0.92723 0.99825 1.21966 0.95173 0.98243 0.95520 1.35677 1.21812 1.04777 1.08773 1.01096 0.72496 0.71705 0.72943 1.53057 1.29891 1.76388 1.32640 1.93645 1.84884 1.85066 1.29364 1.93681 1.72306 1.46524 1.80315 1.84399 1.55581 1.14883 1.44307 1.23250 1.02451 0.76645 0.99711 0.91819 0.76333 0.90303 0.89951 0.91000 0.90741 0.81007 0.80807 0.74342 0.75346 0.90929 0.90810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.15 10.97 55.43 0.61 -22.55 16 2 C 0.07 1.78 5.27 -17.82 -0.09 1.69 16 3 Si 0.91 19.90 29.54 -169.99 -5.02 14.88 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.54 -13.64 8.12 -34.44 -0.28 -13.92 16 8 H 0.07 1.71 7.77 -52.49 -0.41 1.30 16 9 C 0.25 5.86 0.86 -89.94 -0.08 5.78 16 10 O -0.58 -14.41 13.09 -35.23 -0.46 -14.88 16 11 C -0.12 -2.29 6.22 -24.59 -0.15 -2.44 16 12 C 0.09 1.71 6.16 -2.53 -0.02 1.69 16 13 N -0.59 -12.05 3.33 -172.07 -0.57 -12.62 16 14 C 0.59 11.60 7.82 -12.86 -0.10 11.50 16 15 O -0.52 -11.51 17.19 5.20 0.09 -11.42 16 16 C 0.01 0.18 6.93 -36.80 -0.26 -0.07 16 17 C -0.16 -2.07 10.62 -39.39 -0.42 -2.49 16 18 C -0.09 -0.91 10.59 -39.89 -0.42 -1.33 16 19 C -0.58 -6.57 7.35 29.62 0.22 -6.35 16 20 S 2.74 25.06 6.43 -107.50 -0.69 24.36 16 21 N -1.24 -6.03 9.52 60.35 0.57 -5.45 16 22 O -0.94 -12.19 18.02 -57.25 -1.03 -13.22 16 23 O -0.94 -10.40 17.83 -57.17 -1.02 -11.42 16 24 O -0.10 -1.43 7.85 4.99 0.04 -1.40 16 25 C 0.10 2.34 5.39 -3.07 -0.02 2.32 16 26 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 27 H 0.39 9.75 7.17 45.56 0.33 10.08 16 28 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 29 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 30 H 0.07 1.14 6.21 -51.93 -0.32 0.82 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 32 H 0.17 1.95 8.06 -52.48 -0.42 1.53 16 33 H 0.17 1.18 8.06 -52.48 -0.42 0.76 16 34 H 0.42 1.32 8.96 -34.47 -0.31 1.01 16 35 H 0.42 1.13 8.96 -34.47 -0.31 0.82 16 36 H 0.07 1.84 8.01 -51.93 -0.42 1.42 16 37 H 0.07 1.84 7.82 -51.93 -0.41 1.44 16 LS Contribution 334.08 15.07 5.03 5.03 Total: -1.00 -33.53 334.08 -7.15 -40.68 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -3.09 Total: 11.63 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -1.61 Total: -3.62 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.61 Total: -40.62 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -2.38 Total: -52.34 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 25.06 SS G_CDS: -0.69 Total: 24.36 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.53 -7.15 -40.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362939254.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.392 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds