Wall clock time and date at job start Tue Mar 31 2020 06:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 120.00114 * 2 1 4 4 H 1.48499 * 109.47145 * 264.72537 * 3 2 1 5 5 H 1.48506 * 109.46783 * 24.72123 * 3 2 1 6 6 H 1.48493 * 109.47025 * 144.72084 * 3 2 1 7 7 C 1.37869 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00538 * 4.96098 * 7 2 1 9 9 C 1.50703 * 120.00177 * 184.95863 * 7 2 1 10 10 O 1.42907 * 110.63853 * 61.70108 * 9 7 2 11 11 C 1.55148 * 110.87467 * 298.45495 * 9 7 2 12 12 C 1.54914 * 101.58397 * 206.05952 * 11 9 7 13 13 N 1.47427 * 104.82789 * 37.00949 * 12 11 9 14 14 C 1.34776 * 125.64525 * 156.14391 * 13 12 11 15 15 O 1.21612 * 120.00062 * 354.72998 * 14 13 12 16 16 C 1.47376 * 119.99670 * 174.73623 * 14 13 12 17 17 C 1.36421 * 127.19749 * 5.34118 * 16 14 13 18 18 O 1.33645 * 108.39844 * 179.89879 * 17 16 14 19 19 C 1.34214 * 110.91028 * 0.38608 * 18 17 16 20 20 S 1.76202 * 125.43898 * 179.76494 * 19 18 17 21 21 N 1.65607 * 107.21545 * 269.99862 * 20 19 18 22 22 O 1.42100 * 106.40043 * 23.53677 * 20 19 18 23 23 O 1.42097 * 106.40247 * 156.46113 * 20 19 18 24 24 C 1.34177 * 109.12566 * 359.76272 * 19 18 17 25 25 C 1.47026 * 108.70392 * 335.86842 * 13 12 11 26 26 H 0.96999 * 119.99745 * 359.97438 * 1 2 3 27 27 H 0.96699 * 113.99645 * 61.68498 * 10 9 7 28 28 H 1.09000 * 111.00367 * 324.13329 * 11 9 7 29 29 H 1.08995 * 111.00768 * 87.94411 * 11 9 7 30 30 H 1.09002 * 110.36649 * 278.17044 * 12 11 9 31 31 H 1.08999 * 110.36934 * 155.84551 * 12 11 9 32 32 H 1.07998 * 125.79242 * 0.02562 * 17 16 14 33 33 H 0.97003 * 119.99443 * 150.00358 * 21 20 19 34 34 H 0.96990 * 120.00112 * 330.00106 * 21 20 19 35 35 H 1.07996 * 127.02450 * 180.02562 * 24 19 18 36 36 H 1.09001 * 109.87632 * 120.47769 * 25 13 12 37 37 H 1.08997 * 109.88255 * 241.49155 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6082 1.9821 -1.3941 5 1 1.3953 2.6823 0.5856 6 1 3.4865 1.4749 0.8086 7 6 2.0045 -1.1940 -0.0005 8 1 1.4676 -2.1276 -0.0818 9 6 3.5073 -1.1965 0.1123 10 8 3.9205 -0.6154 1.3508 11 6 4.1529 -0.4518 -1.0859 12 6 5.5457 -1.1262 -1.1575 13 7 5.2974 -2.5409 -0.8251 14 6 6.0761 -3.5805 -1.1846 15 8 7.0281 -3.4015 -1.9198 16 6 5.7737 -4.9343 -0.6868 17 6 4.6955 -5.3184 0.0555 18 8 4.7950 -6.6290 0.2972 19 6 5.9103 -7.1342 -0.2526 20 16 6.4210 -8.8182 -0.1636 21 7 7.3601 -8.9747 1.1914 22 8 5.2460 -9.5818 0.0722 23 8 7.2798 -9.0363 -1.2744 24 6 6.5744 -6.1521 -0.8809 25 6 4.0632 -2.6290 -0.0309 26 1 -0.4850 0.8401 0.0004 27 1 3.6068 -1.0908 2.1322 28 1 3.5884 -0.6230 -2.0024 29 1 4.2447 0.6145 -0.8796 30 1 6.2219 -0.6784 -0.4292 31 1 5.9581 -1.0394 -2.1627 32 1 3.8962 -4.6732 0.3892 33 1 7.3863 -9.8188 1.6685 34 1 7.8840 -8.2223 1.5079 35 1 7.5064 -6.2385 -1.4196 36 1 3.3366 -3.2591 -0.5439 37 1 4.2842 -3.0435 0.9527 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362939277.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:36 Heat of formation + Delta-G solvation = -114.520475 kcal Electronic energy + Delta-G solvation = -26306.310130 eV Core-core repulsion = 22178.717045 eV Total energy + Delta-G solvation = -4127.593084 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.081 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.92287 -39.79093 -37.72418 -37.58681 -36.30150 -34.71617 -33.67451 -33.33299 -32.59446 -31.38982 -29.92340 -28.52078 -25.80624 -24.06851 -22.77133 -21.93337 -20.57465 -20.17612 -19.68083 -18.58861 -17.93366 -17.68931 -17.11944 -16.70675 -16.49987 -15.95495 -15.84247 -15.37505 -15.22183 -14.89021 -14.67877 -13.71973 -13.60015 -13.50071 -13.12060 -13.01388 -12.65756 -12.59180 -12.52357 -12.43265 -12.41307 -11.96743 -11.76739 -11.54901 -11.25430 -10.99207 -10.70064 -10.49054 -10.33484 -10.25586 -9.92868 -9.55747 -9.21729 -8.92850 -8.68361 -8.43636 -6.37455 -4.51720 -0.18804 0.76889 1.31052 2.35545 2.75348 3.11983 3.19701 3.24035 3.27282 3.32529 3.47716 4.25738 4.27876 4.28636 4.44358 4.71438 4.89895 4.97105 4.98599 5.18302 5.36538 5.39409 5.52111 5.60567 5.65584 5.71696 5.86659 5.98709 6.28515 6.34401 6.44999 6.49954 6.56640 6.91157 7.25198 7.64811 7.99660 8.20777 8.53757 8.68666 9.24761 10.72381 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.024835 B = 0.003037 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.187186 B = 9216.079350 C = 9876.795638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.093 3.907 3 Si 0.875 3.125 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.229 1.229 7 C -0.559 4.559 8 H 0.080 0.920 9 C 0.221 3.779 10 O -0.570 6.570 11 C -0.129 4.129 12 C 0.111 3.889 13 N -0.604 5.604 14 C 0.597 3.403 15 O -0.546 6.546 16 C -0.246 4.246 17 C 0.065 3.935 18 O -0.117 6.117 19 C -0.590 4.590 20 S 2.741 3.259 21 N -1.244 6.244 22 O -0.944 6.944 23 O -0.937 6.937 24 C -0.028 4.028 25 C 0.069 3.931 26 H 0.269 0.731 27 H 0.365 0.635 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.238 0.762 33 H 0.424 0.576 34 H 0.420 0.580 35 H 0.180 0.820 36 H 0.081 0.919 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.769 -13.059 4.370 18.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.114 4.114 3 Si 0.702 3.298 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.152 1.152 7 C -0.596 4.596 8 H 0.098 0.902 9 C 0.180 3.820 10 O -0.376 6.376 11 C -0.167 4.167 12 C -0.011 4.011 13 N -0.336 5.336 14 C 0.386 3.614 15 O -0.425 6.425 16 C -0.251 4.251 17 C -0.009 4.009 18 O -0.010 6.010 19 C -0.719 4.719 20 S 2.821 3.179 21 N -0.920 5.920 22 O -0.934 6.934 23 O -0.926 6.926 24 C -0.049 4.049 25 C -0.053 4.053 26 H 0.079 0.921 27 H 0.212 0.788 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.253 0.747 33 H 0.256 0.744 34 H 0.247 0.753 35 H 0.197 0.803 36 H 0.099 0.901 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.889 -13.296 2.952 18.751 hybrid contribution 0.181 1.453 0.743 1.642 sum 13.070 -11.843 3.695 18.020 Atomic orbital electron populations 1.69914 1.06682 1.27924 1.47151 1.24923 0.94575 0.99727 0.92160 0.87070 0.81676 0.82115 0.78892 1.20802 1.22576 1.15218 1.21125 0.88082 0.95365 1.55061 0.90237 1.19936 0.93839 0.85482 0.82707 1.86547 1.78510 1.56863 1.15721 1.23159 0.93768 0.99894 0.99851 1.22312 0.98532 0.79425 1.00789 1.48362 1.25153 1.07099 1.52981 1.16696 0.82149 0.82117 0.80406 1.90773 1.29837 1.84828 1.37072 1.21729 0.99005 0.95628 1.08694 1.26217 0.98777 0.82234 0.93687 1.83980 1.35855 1.22177 1.59012 1.35295 0.97232 1.23156 1.16181 1.01013 0.73422 0.70472 0.73029 1.53063 1.64748 1.23907 1.50298 1.93624 1.47985 1.66909 1.84835 1.93695 1.66759 1.81734 1.50444 1.23018 0.99165 0.89131 0.93613 1.23306 0.84965 1.02792 0.94277 0.92103 0.78776 0.89160 0.90279 0.91262 0.90768 0.74655 0.74413 0.75301 0.80309 0.90122 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.57 13.96 55.43 0.77 -23.80 16 2 C 0.09 2.39 5.47 -17.82 -0.10 2.29 16 3 Si 0.87 19.92 23.89 -169.99 -4.06 15.86 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.30 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.23 -5.06 5.47 56.52 0.31 -4.75 16 7 C -0.56 -13.40 8.82 -34.44 -0.30 -13.71 16 8 H 0.08 2.04 7.82 -52.49 -0.41 1.63 16 9 C 0.22 4.33 0.67 -89.94 -0.06 4.27 16 10 O -0.57 -10.92 10.53 -35.23 -0.37 -11.29 16 11 C -0.13 -2.46 4.78 -24.58 -0.12 -2.58 16 12 C 0.11 1.91 6.92 -2.53 -0.02 1.89 16 13 N -0.60 -10.20 3.33 -171.80 -0.57 -10.77 16 14 C 0.60 10.25 7.84 -12.54 -0.10 10.16 16 15 O -0.55 -10.80 17.22 5.27 0.09 -10.71 16 16 C -0.25 -3.52 6.28 -103.27 -0.65 -4.17 16 17 C 0.06 0.80 10.64 30.08 0.32 1.12 16 18 O -0.12 -1.43 10.52 7.67 0.08 -1.35 16 19 C -0.59 -6.53 7.32 29.30 0.21 -6.32 16 20 S 2.74 24.36 6.43 -107.50 -0.69 23.67 16 21 N -1.24 -5.65 9.52 60.35 0.57 -5.08 16 22 O -0.94 -11.52 18.02 -57.28 -1.03 -12.56 16 23 O -0.94 -10.78 17.82 -57.17 -1.02 -11.80 16 24 C -0.03 -0.34 10.71 -37.45 -0.40 -0.74 16 25 C 0.07 1.12 4.36 -3.06 -0.01 1.11 16 26 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.37 5.81 9.08 45.56 0.41 6.22 16 28 H 0.09 1.76 8.04 -51.93 -0.42 1.34 16 29 H 0.08 1.55 4.92 -51.93 -0.26 1.30 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.23 7.99 -51.93 -0.42 0.82 16 32 H 0.24 2.51 4.49 -52.49 -0.24 2.27 16 33 H 0.42 1.12 8.96 -34.47 -0.31 0.81 16 34 H 0.42 1.10 8.96 -34.47 -0.31 0.79 16 35 H 0.18 1.92 8.06 -52.49 -0.42 1.50 16 36 H 0.08 1.28 6.57 -51.93 -0.34 0.94 16 37 H 0.06 0.88 6.80 -51.93 -0.35 0.52 16 LS Contribution 322.88 15.07 4.87 4.87 Total: -1.00 -35.95 322.88 -5.29 -41.24 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -2.71 Total: 8.40 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -1.22 Total: -6.68 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.78 Total: -39.65 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -2.25 Total: -47.71 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.06 Total: 15.86 kcal Atomic # 16 Polarization: 24.36 SS G_CDS: -0.69 Total: 23.67 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.95 -5.29 -41.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362939277.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.278 kcal (2) G-P(sol) polarization free energy of solvation -35.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds