Wall clock time and date at job start Tue Mar 31 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42095 * 110.54340 * 2 1 4 4 O 1.42100 * 110.54068 * 223.25145 * 2 1 3 5 5 C 1.76194 * 104.44823 * 111.62820 * 2 1 3 6 6 N 1.29414 * 125.69900 * 90.02286 * 5 2 1 7 7 N 1.26400 * 116.47815 * 179.97438 * 6 5 2 8 8 C 1.29414 * 116.47404 * 0.02562 * 7 6 5 9 9 C 1.50699 * 125.69585 * 179.73580 * 8 7 6 10 10 N 1.46895 * 109.47612 * 95.39053 * 9 8 7 11 11 C 1.46899 * 111.00370 * 165.34964 * 10 9 8 12 12 C 1.50700 * 109.47238 * 189.99938 * 11 10 9 13 13 H 1.08004 * 119.99674 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99982 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00189 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99908 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47098 * 89.99925 * 16 14 12 18 18 H 1.48497 * 109.46998 * 210.00003 * 16 14 12 19 19 H 1.48497 * 109.47170 * 329.99784 * 16 14 12 20 20 C 1.46902 * 110.99937 * 289.30739 * 10 9 8 21 21 C 1.53001 * 109.46975 * 297.30675 * 20 10 9 22 22 C 1.47203 * 109.47368 * 180.45905 * 21 20 10 23 23 N 8.66760 * 122.53752 * 137.27563 * 2 1 3 24 24 S 1.71216 * 108.60713 * 359.97438 * 8 7 6 25 25 H 1.09000 * 109.47003 * 308.37357 * 1 2 3 26 26 H 1.09003 * 109.47260 * 68.36928 * 1 2 3 27 27 H 1.09000 * 109.47218 * 188.37515 * 1 2 3 28 28 H 1.09003 * 109.46778 * 215.39155 * 9 8 7 29 29 H 1.09001 * 109.47297 * 335.38872 * 9 8 7 30 30 H 1.08995 * 109.46774 * 309.99916 * 11 10 9 31 31 H 1.08998 * 109.47171 * 70.00303 * 11 10 9 32 32 H 0.97001 * 120.00038 * 180.02562 * 15 14 12 33 33 H 1.09004 * 109.47166 * 57.30255 * 20 10 9 34 34 H 1.09000 * 109.47430 * 177.30394 * 20 10 9 35 35 H 1.08999 * 109.47030 * 300.45924 * 21 20 10 36 36 H 1.08998 * 109.47284 * 60.45262 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2536 -0.6289 1.5861 6 7 2.4424 -1.8753 1.8784 7 7 2.7541 -2.1323 3.0761 8 6 2.8494 -1.1205 3.8773 9 6 3.2009 -1.1881 5.3412 10 7 4.6417 -0.9567 5.5100 11 6 4.9680 -0.6702 6.9133 12 6 6.3965 -0.2001 7.0110 13 1 7.0013 -0.1216 6.1196 14 6 6.9313 0.1298 8.2383 15 7 6.1947 0.0348 9.3236 16 14 8.7017 0.7132 8.3592 17 1 8.7465 2.1910 8.2205 18 1 9.2626 0.3225 9.6775 19 1 9.5035 0.0897 7.2759 20 6 5.4202 -2.0982 5.0110 21 6 5.0806 -3.3446 5.8308 22 6 5.8688 -4.4859 5.3380 23 7 6.4759 -5.3680 4.9577 24 16 2.5027 0.3071 2.9980 25 1 -0.3633 0.6380 0.8057 26 1 -0.3634 0.3788 -0.9553 27 1 -0.3634 -1.0167 0.1497 28 1 2.6442 -0.4242 5.8841 29 1 2.9428 -2.1724 5.7318 30 1 4.3031 0.1073 7.2894 31 1 4.8419 -1.5750 7.5078 32 1 6.5708 0.2672 10.1869 33 1 5.1756 -2.2747 3.9635 34 1 6.4842 -1.8808 5.1040 35 1 5.3175 -3.1652 6.8796 36 1 4.0181 -3.5666 5.7313 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364381104.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:35 Heat of formation + Delta-G solvation = 37.770156 kcal Electronic energy + Delta-G solvation = -23122.559774 eV Core-core repulsion = 19476.616129 eV Total energy + Delta-G solvation = -3645.943645 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.061 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.52012 -38.14968 -37.48191 -36.37048 -36.02289 -33.11339 -32.31431 -30.58783 -30.03963 -28.78522 -26.68036 -25.25304 -23.60770 -21.88396 -20.45024 -19.47476 -19.13370 -17.85221 -17.23291 -16.88326 -16.49040 -16.03354 -15.97292 -15.24277 -14.95038 -14.51002 -14.28758 -13.92470 -13.76081 -13.70657 -13.65423 -13.30219 -12.60153 -12.51078 -12.41897 -12.30779 -12.16496 -12.08896 -11.81922 -11.56708 -11.46682 -11.32294 -10.93559 -10.83195 -10.71031 -10.53995 -10.42933 -10.34461 -10.11971 -9.87840 -9.48746 -8.62822 -7.79174 -6.22719 -4.25088 -0.53544 -0.14459 0.60284 1.05725 2.12853 2.28854 3.07246 3.11737 3.23191 3.30612 3.33930 3.39984 3.71553 3.91923 4.22471 4.28432 4.31674 4.39729 4.70580 4.75086 4.94471 5.14763 5.15058 5.25510 5.36434 5.50479 5.54456 5.79106 6.07663 6.43859 6.82539 6.95240 7.45769 7.61006 7.84337 7.89399 8.14217 8.17189 8.81498 9.41091 10.87533 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.014929 B = 0.003341 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.113360 B = 8377.531121 C = 9348.129770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.531 3.469 3 O -0.918 6.918 4 O -0.906 6.906 5 C -0.631 4.631 6 N -0.138 5.138 7 N -0.271 5.271 8 C 0.035 3.965 9 C 0.108 3.892 10 N -0.522 5.522 11 C 0.188 3.812 12 C -0.515 4.515 13 H 0.066 0.934 14 C 0.062 3.938 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.067 3.933 21 C -0.070 4.070 22 C 0.224 3.776 23 N -0.456 5.456 24 S 0.326 5.674 25 H 0.135 0.865 26 H 0.140 0.860 27 H 0.138 0.862 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.009 0.991 32 H 0.264 0.736 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.124 0.876 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.093 2.927 -12.133 20.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.700 3.300 3 O -0.915 6.915 4 O -0.903 6.903 5 C -0.985 4.985 6 N 0.017 4.983 7 N -0.115 5.115 8 C -0.240 4.240 9 C -0.024 4.024 10 N -0.246 5.246 11 C 0.064 3.936 12 C -0.553 4.553 13 H 0.084 0.916 14 C -0.141 4.141 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.063 4.063 21 C -0.112 4.112 22 C -0.093 4.093 23 N -0.134 5.134 24 S 0.568 5.432 25 H 0.154 0.846 26 H 0.159 0.841 27 H 0.157 0.843 28 H 0.125 0.875 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.026 0.974 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.142 0.858 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.441 2.015 -13.406 19.807 hybrid contribution 0.118 -0.428 1.569 1.630 sum -14.323 1.587 -11.838 18.649 Atomic orbital electron populations 1.30166 1.24024 1.12764 1.12429 1.05100 0.78399 0.74456 0.72025 1.93658 1.77896 1.35277 1.84621 1.93624 1.77282 1.61256 1.58132 1.41130 1.24492 1.03227 1.29614 1.71540 1.04198 1.13534 1.09027 1.71576 1.15755 1.27776 0.96406 1.30056 0.97164 0.92300 1.04497 1.20905 0.93900 1.03672 0.83907 1.62516 0.99937 1.35933 1.26252 1.19955 0.97903 0.96359 0.79367 1.21055 0.96102 1.44844 0.93312 0.91603 1.24922 0.98124 0.95442 0.95597 1.69919 1.36537 1.48359 0.98536 0.86506 0.84402 0.79166 0.77470 1.20496 1.21254 1.19770 1.22112 1.01231 0.86001 0.96933 1.20134 0.98119 0.89109 1.03789 1.29120 0.93441 0.93941 0.92818 1.81156 1.10405 1.11843 1.09985 1.83706 1.54646 1.09596 0.95202 0.84625 0.84118 0.84321 0.87531 0.90371 0.94385 0.97383 0.92653 0.91726 0.88301 0.85806 0.88072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -2.32 10.80 101.05 1.09 -1.22 16 2 S 2.53 22.75 5.97 -107.50 -0.64 22.10 16 3 O -0.92 -10.24 17.75 -57.54 -1.02 -11.27 16 4 O -0.91 -11.61 17.93 -57.54 -1.03 -12.64 16 5 C -0.63 -7.40 7.18 51.74 0.37 -7.03 16 6 N -0.14 -1.99 11.63 30.11 0.35 -1.64 16 7 N -0.27 -4.01 11.21 32.58 0.37 -3.65 16 8 C 0.03 0.46 6.24 -13.30 -0.08 0.37 16 9 C 0.11 1.42 5.43 -4.98 -0.03 1.39 16 10 N -0.52 -8.74 4.66 -237.52 -1.11 -9.85 16 11 C 0.19 3.85 4.50 -4.98 -0.02 3.83 16 12 C -0.51 -12.40 8.50 -34.44 -0.29 -12.69 16 13 H 0.07 1.61 7.11 -52.48 -0.37 1.23 16 14 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.89 -23.63 13.29 55.43 0.74 -22.89 16 16 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 18 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 C 0.07 1.10 4.97 -3.82 -0.02 1.08 16 21 C -0.07 -1.02 5.06 -29.52 -0.15 -1.17 16 22 C 0.22 3.74 15.43 -20.75 -0.32 3.42 16 23 N -0.46 -8.61 18.54 42.17 0.78 -7.83 16 24 S 0.33 3.63 22.84 -107.50 -2.46 1.17 16 25 H 0.14 0.23 8.14 -51.92 -0.42 -0.19 16 26 H 0.14 0.21 8.14 -51.92 -0.42 -0.21 16 27 H 0.14 0.40 8.14 -51.92 -0.42 -0.03 16 28 H 0.11 1.21 7.84 -51.93 -0.41 0.81 16 29 H 0.08 0.92 5.92 -51.93 -0.31 0.62 16 30 H 0.04 0.83 7.87 -51.93 -0.41 0.42 16 31 H 0.01 0.18 6.03 -51.93 -0.31 -0.14 16 32 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.06 1.05 7.03 -51.93 -0.36 0.69 16 34 H 0.10 1.80 6.82 -51.93 -0.35 1.45 16 35 H 0.12 1.91 6.28 -51.93 -0.33 1.59 16 36 H 0.10 1.26 6.27 -51.93 -0.33 0.93 16 LS Contribution 342.12 15.07 5.16 5.16 Total: -1.00 -33.87 342.12 -7.02 -40.89 By element: Atomic # 1 Polarization: -0.48 SS G_CDS: -3.58 Total: -4.07 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 0.45 Total: -10.56 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 1.13 Total: -45.85 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -2.05 Total: -23.91 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 26.37 SS G_CDS: -3.10 Total: 23.28 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.87 -7.02 -40.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364381104.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.658 kcal (2) G-P(sol) polarization free energy of solvation -33.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds